HEADER OXIDOREDUCTASE 04-FEB-17 5UPY TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE TITLE 2 DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN THE COMPLEX WITH IMP AND TITLE 3 Q21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMPDH; COMPND 5 EC: 1.1.1.205; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN SOURCE 3 ATCC BAA-679 / EGD-E); SOURCE 4 ORGANISM_TAXID: 169963; SOURCE 5 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 6 GENE: GUAB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG50 KEYWDS IMPDH, DELTA CBS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 2 OF INFECTIOUS DISEASES, CSGID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.MAKOWSKA-GRZYSKA,J.OSIPIUK,W.F.ANDERSON,A.JOACHIMIAK,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 04-OCT-23 5UPY 1 REMARK REVDAT 3 01-JAN-20 5UPY 1 REMARK REVDAT 2 20-SEP-17 5UPY 1 REMARK REVDAT 1 05-APR-17 5UPY 0 JRNL AUTH Y.KIM,M.MAKOWSKA-GRZYSKA,J.OSIPIUK,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE JRNL TITL 2 MONOPHOSPHATE DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN JRNL TITL 3 THE COMPLEX WITH IMP AND Q21 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2411: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5487 - 4.4845 0.99 2770 119 0.1424 0.1775 REMARK 3 2 4.4845 - 3.5600 1.00 2619 142 0.1375 0.1811 REMARK 3 3 3.5600 - 3.1101 1.00 2579 158 0.1678 0.2192 REMARK 3 4 3.1101 - 2.8258 1.00 2564 149 0.1823 0.2234 REMARK 3 5 2.8258 - 2.6233 1.00 2560 141 0.1923 0.2548 REMARK 3 6 2.6233 - 2.4687 1.00 2522 151 0.2039 0.2259 REMARK 3 7 2.4687 - 2.3450 0.99 2558 125 0.2155 0.2650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2713 REMARK 3 ANGLE : 0.708 3663 REMARK 3 CHIRALITY : 0.047 420 REMARK 3 PLANARITY : 0.004 467 REMARK 3 DIHEDRAL : 18.498 1600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.0401 20.4025 23.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1981 REMARK 3 T33: 0.1625 T12: 0.0153 REMARK 3 T13: -0.0096 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6866 L22: 1.0924 REMARK 3 L33: 0.8404 L12: -0.0117 REMARK 3 L13: -0.0599 L23: 0.2964 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0152 S13: 0.0774 REMARK 3 S21: 0.0764 S22: -0.0022 S23: 0.0092 REMARK 3 S31: -0.1054 S32: -0.0338 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 364 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0398 17.8178 18.3775 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.4006 REMARK 3 T33: 0.4118 T12: -0.0289 REMARK 3 T13: -0.0216 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 7.4640 L22: 2.6439 REMARK 3 L33: 6.2325 L12: 1.4868 REMARK 3 L13: -1.1699 L23: -2.8183 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: 0.2992 S13: 0.1669 REMARK 3 S21: -0.3435 S22: 0.3610 S23: 0.8811 REMARK 3 S31: 0.2865 S32: -0.9124 S33: -0.4054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5301 10.7294 21.7248 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.1535 REMARK 3 T33: 0.2195 T12: -0.0516 REMARK 3 T13: 0.0044 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 3.4084 L22: 1.0476 REMARK 3 L33: 3.2293 L12: -0.6792 REMARK 3 L13: -0.3681 L23: -1.5654 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.0217 S13: -0.1986 REMARK 3 S21: 0.1241 S22: 0.0442 S23: 0.3250 REMARK 3 S31: -0.0198 S32: -0.2189 S33: -0.1215 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 486 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.8328 -2.2147 18.5501 REMARK 3 T TENSOR REMARK 3 T11: 0.3257 T22: 0.2540 REMARK 3 T33: 0.2893 T12: 0.0348 REMARK 3 T13: -0.0222 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.8655 L22: 2.2496 REMARK 3 L33: 3.1847 L12: 0.9257 REMARK 3 L13: 0.5266 L23: 1.1398 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: -0.0435 S13: 0.0389 REMARK 3 S21: -0.1712 S22: -0.0578 S23: 0.2646 REMARK 3 S31: -0.0342 S32: -0.3108 S33: 0.1162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4MY8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 10% (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 87.08250 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 87.08250 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 87.08250 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 87.08250 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 87.08250 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 87.08250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 SER A 401 REMARK 465 LYS A 402 REMARK 465 ASP A 403 REMARK 465 ARG A 404 REMARK 465 TYR A 405 REMARK 465 PHE A 406 REMARK 465 GLN A 407 REMARK 465 ALA A 408 REMARK 465 ASP A 409 REMARK 465 ALA A 410 REMARK 465 LYS A 411 REMARK 465 ILE A 487 REMARK 465 SER A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 54 -59.73 -123.37 REMARK 500 GLU A 56 -162.21 -118.66 REMARK 500 ALA A 282 13.04 -141.33 REMARK 500 LYS A 336 -166.93 -109.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q21 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UPX RELATED DB: PDB REMARK 900 THE DIFFERENT CONSTRUCT OF THE SAME PROTEIN IN THE COMPLEX WITH XMP REMARK 900 RELATED ID: CSGID-IDP06352 RELATED DB: TARGETTRACK DBREF 5UPY A 1 91 UNP Q926Y9 Q926Y9_LISMO 1 91 DBREF 5UPY A 221 488 UNP Q926Y9 Q926Y9_LISMO 221 488 SEQADV 5UPY SER A -2 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPY ASN A -1 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPY ALA A 0 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPY GLY A 92 UNP Q926Y9 LINKER SEQADV 5UPY GLY A 93 UNP Q926Y9 LINKER SEQRES 1 A 364 SER ASN ALA MET TRP GLU THR LYS PHE ALA LYS GLU GLY SEQRES 2 A 364 LEU THR PHE ASP ASP VAL LEU LEU VAL PRO ALA LYS SER SEQRES 3 A 364 ASP VAL LEU PRO ASN ASP VAL ASP LEU SER VAL GLU MET SEQRES 4 A 364 ALA PRO SER LEU LYS LEU ASN VAL PRO ILE TRP SER ALA SEQRES 5 A 364 GLY MET ASP THR ILE THR GLU ALA LYS MET ALA ILE ALA SEQRES 6 A 364 ILE ALA ARG GLN GLY GLY ILE GLY VAL VAL HIS LYS ASN SEQRES 7 A 364 MET SER ILE GLU GLN GLN ALA GLU GLU ILE GLU LYS VAL SEQRES 8 A 364 LYS ARG SER GLY GLY LEU LEU ALA ALA ALA ALA VAL GLY SEQRES 9 A 364 ILE THR ASN ASP THR PHE VAL ARG VAL GLU LYS LEU ILE SEQRES 10 A 364 GLU ALA GLY VAL ASP ALA ILE VAL ILE ASP THR ALA HIS SEQRES 11 A 364 GLY HIS SER ALA GLY VAL ILE ASN LYS ILE SER GLU ILE SEQRES 12 A 364 ARG GLN THR PHE LYS ASP VAL VAL ILE VAL ALA GLY ASN SEQRES 13 A 364 VAL ALA THR ALA GLU GLY ALA ARG ALA LEU PHE GLU VAL SEQRES 14 A 364 GLY VAL ASP ILE VAL LYS VAL GLY ILE GLY PRO GLY SER SEQRES 15 A 364 ILE CYS THR THR ARG VAL VAL ALA GLY VAL GLY VAL PRO SEQRES 16 A 364 GLN ILE THR ALA ILE TYR ASP CYS ALA THR VAL ALA ARG SEQRES 17 A 364 GLU PHE GLY LYS THR ILE ILE ALA ASP GLY GLY ILE LYS SEQRES 18 A 364 TYR SER GLY ASP ILE VAL LYS ALA LEU ALA ALA GLY GLY SEQRES 19 A 364 ASN ALA VAL MET LEU GLY SER MET LEU ALA GLY THR ASP SEQRES 20 A 364 GLU SER PRO GLY GLU THR GLU ILE PHE GLN GLY ARG GLN SEQRES 21 A 364 PHE LYS THR TYR ARG GLY MET GLY SER LEU ALA ALA MET SEQRES 22 A 364 GLU HIS GLY SER LYS ASP ARG TYR PHE GLN ALA ASP ALA SEQRES 23 A 364 LYS LYS LEU VAL PRO GLU GLY ILE GLU GLY ARG VAL PRO SEQRES 24 A 364 TYR LYS GLY SER VAL ALA ASP ILE ILE PHE GLN LEU VAL SEQRES 25 A 364 GLY GLY ILE ARG SER GLY MET GLY TYR THR GLY SER PRO SEQRES 26 A 364 ASP LEU ARG HIS LEU ARG GLU GLU ALA ALA PHE VAL ARG SEQRES 27 A 364 MET THR GLY ALA GLY LEU ARG GLU SER HIS PRO HIS ASP SEQRES 28 A 364 ILE GLN ILE THR LYS GLU ALA PRO ASN TYR SER ILE SER HET IMP A 500 23 HET Q21 A 501 31 HET CL A 502 1 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HETNAM IMP INOSINIC ACID HETNAM Q21 (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(PYRIDIN-4-YL)-1,3- HETNAM 2 Q21 BENZOXAZOL-5-YL]PROPANAMIDE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 IMP C10 H13 N4 O8 P FORMUL 3 Q21 C25 H19 N3 O3 FORMUL 4 CL CL 1- FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *104(H2 O) HELIX 1 AA1 ASN A -1 THR A 4 1 6 HELIX 2 AA2 THR A 12 ASP A 14 5 3 HELIX 3 AA3 LEU A 26 VAL A 30 5 5 HELIX 4 AA4 GLU A 56 GLN A 66 1 11 HELIX 5 AA5 SER A 77 ARG A 90 1 14 HELIX 6 AA6 ASP A 232 ALA A 243 1 12 HELIX 7 AA7 SER A 257 PHE A 271 1 15 HELIX 8 AA8 THR A 283 GLU A 292 1 10 HELIX 9 AA9 THR A 309 ALA A 314 1 6 HELIX 10 AB1 PRO A 319 GLY A 335 1 17 HELIX 11 AB2 TYR A 346 ALA A 356 1 11 HELIX 12 AB3 SER A 393 GLY A 400 1 8 HELIX 13 AB4 SER A 427 GLY A 447 1 21 HELIX 14 AB5 ASP A 450 ALA A 458 1 9 HELIX 15 AB6 THR A 464 HIS A 472 1 9 SHEET 1 AA1 2 VAL A 16 LEU A 18 0 SHEET 2 AA1 2 PHE A 460 ARG A 462 -1 O VAL A 461 N LEU A 17 SHEET 1 AA2 2 VAL A 34 ALA A 37 0 SHEET 2 AA2 2 LEU A 40 LEU A 42 -1 O LEU A 42 N VAL A 34 SHEET 1 AA3 9 ILE A 46 SER A 48 0 SHEET 2 AA3 9 ILE A 69 VAL A 72 1 O ILE A 69 N SER A 48 SHEET 3 AA3 9 ALA A 224 VAL A 227 1 O ALA A 226 N VAL A 72 SHEET 4 AA3 9 ALA A 247 ASP A 251 1 O VAL A 249 N ALA A 225 SHEET 5 AA3 9 VAL A 275 VAL A 281 1 O VAL A 277 N ILE A 248 SHEET 6 AA3 9 ILE A 297 VAL A 300 1 O LYS A 299 N ALA A 278 SHEET 7 AA3 9 THR A 337 ASP A 341 1 O ILE A 339 N VAL A 300 SHEET 8 AA3 9 ALA A 360 LEU A 363 1 O ALA A 360 N ALA A 340 SHEET 9 AA3 9 ILE A 46 SER A 48 1 N TRP A 47 O VAL A 361 SHEET 1 AA4 3 GLU A 378 PHE A 380 0 SHEET 2 AA4 3 ARG A 383 ARG A 389 -1 O PHE A 385 N GLU A 378 SHEET 3 AA4 3 GLU A 419 PRO A 423 -1 O GLY A 420 N TYR A 388 CISPEP 1 GLY A 279 ASN A 280 0 -0.49 SITE 1 AC1 23 ALA A 49 MET A 51 GLY A 305 SER A 306 SITE 2 AC1 23 ILE A 307 CYS A 308 ASP A 341 GLY A 343 SITE 3 AC1 23 MET A 362 GLY A 364 SER A 365 TYR A 388 SITE 4 AC1 23 GLY A 390 MET A 391 GLY A 392 GLU A 416 SITE 5 AC1 23 GLY A 417 Q21 A 501 HOH A 623 HOH A 648 SITE 6 AC1 23 HOH A 649 HOH A 667 HOH A 676 SITE 1 AC2 15 SER A 23 VAL A 25 LEU A 26 PRO A 27 SITE 2 AC2 15 ALA A 253 SER A 257 THR A 310 MET A 391 SITE 3 AC2 15 GLY A 392 VAL A 414 GLU A 416 SER A 441 SITE 4 AC2 15 TYR A 445 IMP A 500 HOH A 686 SITE 1 AC3 4 PHE A 271 ASP A 273 VAL A 274 HOH A 671 SITE 1 AC4 2 THR A 322 HOH A 619 SITE 1 AC5 5 LEU A 11 ASP A 15 ARG A 462 MET A 463 SITE 2 AC5 5 THR A 464 SITE 1 AC6 6 ALA A 37 PRO A 38 SER A 39 ASP A 273 SITE 2 AC6 6 VAL A 274 ASP A 296 SITE 1 AC7 2 ASN A 43 GLY A 67 SITE 1 AC8 2 GLU A 35 GLY A 335 SITE 1 AC9 3 VAL A 245 ASP A 246 HOH A 671 CRYST1 174.165 174.165 174.165 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005742 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005742 0.00000