HEADER TRANSFERASE 08-FEB-17 5UQL TITLE CLOSTRIDIUM DIFFICILE TOXIN A (TCDA) GLUCOSYLTRANSFERASE DOMAIN IN TITLE 2 COMPLEX WITH U2F COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-544; COMPND 5 EC: 3.4.22.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: TOXA, TCDA; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS MEGATERIUM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1404; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS1622 KEYWDS GLUCOSYLTRANSFERASE, TOXIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.ALVIN,D.B.LACY REVDAT 5 04-OCT-23 5UQL 1 REMARK LINK REVDAT 4 11-DEC-19 5UQL 1 REMARK REVDAT 3 20-SEP-17 5UQL 1 REMARK REVDAT 2 14-JUN-17 5UQL 1 JRNL REVDAT 1 10-MAY-17 5UQL 0 JRNL AUTH J.W.ALVIN,D.B.LACY JRNL TITL CLOSTRIDIUM DIFFICILE TOXIN GLUCOSYLTRANSFERASE DOMAINS IN JRNL TITL 2 COMPLEX WITH A NON-HYDROLYZABLE UDP-GLUCOSE ANALOGUE. JRNL REF J. STRUCT. BIOL. V. 198 203 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 28433497 JRNL DOI 10.1016/J.JSB.2017.04.006 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5313 - 4.7457 1.00 3633 146 0.1717 0.1650 REMARK 3 2 4.7457 - 3.7674 1.00 3578 143 0.1435 0.1635 REMARK 3 3 3.7674 - 3.2913 1.00 3537 143 0.1632 0.1815 REMARK 3 4 3.2913 - 2.9904 1.00 3555 143 0.1819 0.2336 REMARK 3 5 2.9904 - 2.7761 1.00 3526 142 0.1844 0.2093 REMARK 3 6 2.7761 - 2.6125 1.00 3540 143 0.1887 0.2246 REMARK 3 7 2.6125 - 2.4816 1.00 3534 147 0.1963 0.2214 REMARK 3 8 2.4816 - 2.3736 1.00 3513 142 0.1943 0.1960 REMARK 3 9 2.3736 - 2.2822 1.00 3508 140 0.2150 0.2501 REMARK 3 10 2.2822 - 2.2035 1.00 3515 142 0.2144 0.2579 REMARK 3 11 2.2035 - 2.1346 1.00 3501 147 0.2394 0.2339 REMARK 3 12 2.1346 - 2.0736 1.00 3517 141 0.2462 0.2713 REMARK 3 13 2.0736 - 2.0190 1.00 3491 139 0.2634 0.2937 REMARK 3 14 2.0190 - 1.9697 0.99 3485 137 0.2913 0.3230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4675 REMARK 3 ANGLE : 0.665 6344 REMARK 3 CHIRALITY : 0.041 714 REMARK 3 PLANARITY : 0.003 807 REMARK 3 DIHEDRAL : 16.742 1801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000225953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 46.518 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES 0.2 M L-PROLINE PEG 3350, REMARK 280 10-25%, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.00200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.00100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.50150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.50050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.50250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 543 REMARK 465 GLU A 544 REMARK 465 PRO A 545 REMARK 465 HIS A 546 REMARK 465 ALA A 547 REMARK 465 GLY A 548 REMARK 465 LEU A 549 REMARK 465 ARG A 550 REMARK 465 GLY A 551 REMARK 465 SER A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 37 O HOH A 708 1.45 REMARK 500 HD22 ASN A 404 O HOH A 709 1.56 REMARK 500 HG SER A 5 O HOH A 716 1.57 REMARK 500 O HOH A 852 O HOH A 894 1.81 REMARK 500 O THR A 90 O HOH A 701 1.81 REMARK 500 OD2 ASP A 56 O HOH A 702 1.81 REMARK 500 O HOH A 845 O HOH A 1086 1.82 REMARK 500 OG1 THR A 90 O HOH A 701 1.85 REMARK 500 O HOH A 1045 O HOH A 1064 1.88 REMARK 500 OE1 GLU A 112 O HOH A 703 1.89 REMARK 500 OE1 GLU A 485 O HOH A 704 1.90 REMARK 500 O HOH A 876 O HOH A 1016 1.96 REMARK 500 O HOH A 840 O HOH A 1040 1.96 REMARK 500 NE2 GLN A 513 O HOH A 705 1.98 REMARK 500 O HOH A 1054 O HOH A 1091 1.98 REMARK 500 O HOH A 1027 O HOH A 1120 1.99 REMARK 500 O HOH A 919 O HOH A 1071 1.99 REMARK 500 O HOH A 766 O HOH A 1025 2.00 REMARK 500 O HOH A 717 O HOH A 1017 2.01 REMARK 500 OE2 GLU A 20 O HOH A 706 2.01 REMARK 500 OE1 GLU A 247 O HOH A 707 2.04 REMARK 500 O HOH A 1054 O HOH A 1074 2.05 REMARK 500 O HOH A 1057 O HOH A 1105 2.05 REMARK 500 O HOH A 945 O HOH A 1117 2.05 REMARK 500 N THR A 37 O HOH A 708 2.06 REMARK 500 O HOH A 817 O HOH A 982 2.09 REMARK 500 O HOH A 719 O HOH A 1042 2.10 REMARK 500 ND2 ASN A 404 O HOH A 709 2.14 REMARK 500 O HOH A 992 O HOH A 1125 2.15 REMARK 500 OG SER A 301 O HOH A 710 2.15 REMARK 500 O ASN A 516 O HOH A 711 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 328 47.45 34.05 REMARK 500 GLU A 363 -139.95 59.67 REMARK 500 ASP A 420 19.69 55.75 REMARK 500 LEU A 467 -70.71 -108.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 GLU A 514 OE1 81.0 REMARK 620 3 U2F A 602 O2B 170.0 106.7 REMARK 620 4 U2F A 602 O1A 88.7 169.3 83.3 REMARK 620 5 HOH A 711 O 86.1 83.5 88.4 93.2 REMARK 620 6 HOH A 795 O 88.3 89.4 98.0 92.9 171.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U2F A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UQN RELATED DB: PDB REMARK 900 RELATED ID: 5UQK RELATED DB: PDB REMARK 900 RELATED ID: 5UQM RELATED DB: PDB REMARK 900 RELATED ID: 5UQT RELATED DB: PDB DBREF 5UQL A 1 544 UNP P16154 TOXA_CLODI 1 544 SEQADV 5UQL PRO A 545 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 546 UNP P16154 EXPRESSION TAG SEQADV 5UQL ALA A 547 UNP P16154 EXPRESSION TAG SEQADV 5UQL GLY A 548 UNP P16154 EXPRESSION TAG SEQADV 5UQL LEU A 549 UNP P16154 EXPRESSION TAG SEQADV 5UQL ARG A 550 UNP P16154 EXPRESSION TAG SEQADV 5UQL GLY A 551 UNP P16154 EXPRESSION TAG SEQADV 5UQL SER A 552 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 553 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 554 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 555 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 556 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 557 UNP P16154 EXPRESSION TAG SEQADV 5UQL HIS A 558 UNP P16154 EXPRESSION TAG SEQRES 1 A 558 MET SER LEU ILE SER LYS GLU GLU LEU ILE LYS LEU ALA SEQRES 2 A 558 TYR SER ILE ARG PRO ARG GLU ASN GLU TYR LYS THR ILE SEQRES 3 A 558 LEU THR ASN LEU ASP GLU TYR ASN LYS LEU THR THR ASN SEQRES 4 A 558 ASN ASN GLU ASN LYS TYR LEU GLN LEU LYS LYS LEU ASN SEQRES 5 A 558 GLU SER ILE ASP VAL PHE MET ASN LYS TYR LYS THR SER SEQRES 6 A 558 SER ARG ASN ARG ALA LEU SER ASN LEU LYS LYS ASP ILE SEQRES 7 A 558 LEU LYS GLU VAL ILE LEU ILE LYS ASN SER ASN THR SER SEQRES 8 A 558 PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE GLY GLY SEQRES 9 A 558 GLU VAL SER ASP ILE ALA LEU GLU TYR ILE LYS GLN TRP SEQRES 10 A 558 ALA ASP ILE ASN ALA GLU TYR ASN ILE LYS LEU TRP TYR SEQRES 11 A 558 ASP SER GLU ALA PHE LEU VAL ASN THR LEU LYS LYS ALA SEQRES 12 A 558 ILE VAL GLU SER SER THR THR GLU ALA LEU GLN LEU LEU SEQRES 13 A 558 GLU GLU GLU ILE GLN ASN PRO GLN PHE ASP ASN MET LYS SEQRES 14 A 558 PHE TYR LYS LYS ARG MET GLU PHE ILE TYR ASP ARG GLN SEQRES 15 A 558 LYS ARG PHE ILE ASN TYR TYR LYS SER GLN ILE ASN LYS SEQRES 16 A 558 PRO THR VAL PRO THR ILE ASP ASP ILE ILE LYS SER HIS SEQRES 17 A 558 LEU VAL SER GLU TYR ASN ARG ASP GLU THR VAL LEU GLU SEQRES 18 A 558 SER TYR ARG THR ASN SER LEU ARG LYS ILE ASN SER ASN SEQRES 19 A 558 HIS GLY ILE ASP ILE ARG ALA ASN SER LEU PHE THR GLU SEQRES 20 A 558 GLN GLU LEU LEU ASN ILE TYR SER GLN GLU LEU LEU ASN SEQRES 21 A 558 ARG GLY ASN LEU ALA ALA ALA SER ASP ILE VAL ARG LEU SEQRES 22 A 558 LEU ALA LEU LYS ASN PHE GLY GLY VAL TYR LEU ASP VAL SEQRES 23 A 558 ASP MET LEU PRO GLY ILE HIS SER ASP LEU PHE LYS THR SEQRES 24 A 558 ILE SER ARG PRO SER SER ILE GLY LEU ASP ARG TRP GLU SEQRES 25 A 558 MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS LYS TYR SEQRES 26 A 558 ILE ASN ASN TYR THR SER GLU ASN PHE ASP LYS LEU ASP SEQRES 27 A 558 GLN GLN LEU LYS ASP ASN PHE LYS LEU ILE ILE GLU SER SEQRES 28 A 558 LYS SER GLU LYS SER GLU ILE PHE SER LYS LEU GLU ASN SEQRES 29 A 558 LEU ASN VAL SER ASP LEU GLU ILE LYS ILE ALA PHE ALA SEQRES 30 A 558 LEU GLY SER VAL ILE ASN GLN ALA LEU ILE SER LYS GLN SEQRES 31 A 558 GLY SER TYR LEU THR ASN LEU VAL ILE GLU GLN VAL LYS SEQRES 32 A 558 ASN ARG TYR GLN PHE LEU ASN GLN HIS LEU ASN PRO ALA SEQRES 33 A 558 ILE GLU SER ASP ASN ASN PHE THR ASP THR THR LYS ILE SEQRES 34 A 558 PHE HIS ASP SER LEU PHE ASN SER ALA THR ALA GLU ASN SEQRES 35 A 558 SER MET PHE LEU THR LYS ILE ALA PRO TYR LEU GLN VAL SEQRES 36 A 558 GLY PHE MET PRO GLU ALA ARG SER THR ILE SER LEU SER SEQRES 37 A 558 GLY PRO GLY ALA TYR ALA SER ALA TYR TYR ASP PHE ILE SEQRES 38 A 558 ASN LEU GLN GLU ASN THR ILE GLU LYS THR LEU LYS ALA SEQRES 39 A 558 SER ASP LEU ILE GLU PHE LYS PHE PRO GLU ASN ASN LEU SEQRES 40 A 558 SER GLN LEU THR GLU GLN GLU ILE ASN SER LEU TRP SER SEQRES 41 A 558 PHE ASP GLN ALA SER ALA LYS TYR GLN PHE GLU LYS TYR SEQRES 42 A 558 VAL ARG ASP TYR THR GLY GLY SER LEU SER GLU PRO HIS SEQRES 43 A 558 ALA GLY LEU ARG GLY SER HIS HIS HIS HIS HIS HIS HET MN A 601 1 HET U2F A 602 57 HETNAM MN MANGANESE (II) ION HETNAM U2F URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE FORMUL 2 MN MN 2+ FORMUL 3 U2F C15 H23 F N2 O16 P2 FORMUL 4 HOH *428(H2 O) HELIX 1 AA1 SER A 5 ALA A 13 1 9 HELIX 2 AA2 GLU A 20 LYS A 35 1 16 HELIX 3 AA3 ASN A 40 TYR A 62 1 23 HELIX 4 AA4 ARG A 67 ASN A 87 1 21 HELIX 5 AA5 SER A 107 ASN A 121 1 15 HELIX 6 AA6 LEU A 136 LEU A 156 1 21 HELIX 7 AA7 LEU A 156 GLN A 161 1 6 HELIX 8 AA8 ASP A 166 ASN A 194 1 29 HELIX 9 AA9 THR A 200 TYR A 213 1 14 HELIX 10 AB1 ASP A 216 SER A 233 1 18 HELIX 11 AB2 ARG A 240 ASN A 242 5 3 HELIX 12 AB3 GLU A 247 LEU A 259 1 13 HELIX 13 AB4 ASN A 263 GLY A 280 1 18 HELIX 14 AB5 GLY A 307 LYS A 324 1 18 HELIX 15 AB6 ASN A 333 LEU A 337 5 5 HELIX 16 AB7 ASP A 338 LYS A 352 1 15 HELIX 17 AB8 GLU A 354 PHE A 359 1 6 HELIX 18 AB9 SER A 392 GLU A 418 1 27 HELIX 19 AC1 ASN A 422 ASN A 436 1 15 HELIX 20 AC2 ASN A 442 ALA A 450 1 9 HELIX 21 AC3 PRO A 451 VAL A 455 5 5 HELIX 22 AC4 SER A 463 SER A 468 1 6 HELIX 23 AC5 GLY A 469 LEU A 483 1 15 HELIX 24 AC6 LYS A 493 LYS A 501 5 9 HELIX 25 AC7 PRO A 503 LEU A 507 5 5 HELIX 26 AC8 GLU A 512 ASN A 516 5 5 HELIX 27 AC9 ASP A 522 GLY A 539 1 18 SHEET 1 AA1 2 SER A 91 PRO A 92 0 SHEET 2 AA1 2 ASN A 366 VAL A 367 -1 O VAL A 367 N SER A 91 SHEET 1 AA2 6 GLY A 236 ASP A 238 0 SHEET 2 AA2 6 ASN A 125 TYR A 130 1 N LEU A 128 O ILE A 237 SHEET 3 AA2 6 ASN A 96 VAL A 100 1 N PHE A 99 O TRP A 129 SHEET 4 AA2 6 GLY A 281 LEU A 284 1 O VAL A 282 N HIS A 98 SHEET 5 AA2 6 SER A 380 SER A 388 -1 O SER A 388 N GLY A 281 SHEET 6 AA2 6 LYS A 373 ALA A 377 -1 N ALA A 377 O SER A 380 LINK OD2 ASP A 287 MN MN A 601 1555 1555 2.10 LINK OE1 GLU A 514 MN MN A 601 1555 1555 2.21 LINK MN MN A 601 O2B U2F A 602 1555 1555 2.12 LINK MN MN A 601 O1A U2F A 602 1555 1555 2.14 LINK MN MN A 601 O HOH A 711 1555 1555 2.51 LINK MN MN A 601 O HOH A 795 1555 1555 2.27 SITE 1 AC1 5 ASP A 287 GLU A 514 U2F A 602 HOH A 711 SITE 2 AC1 5 HOH A 795 SITE 1 AC2 27 VAL A 100 TRP A 101 ILE A 102 ASN A 138 SITE 2 AC2 27 LEU A 264 ALA A 265 SER A 268 ASP A 269 SITE 3 AC2 27 ARG A 272 TYR A 283 ASP A 285 VAL A 286 SITE 4 AC2 27 ASP A 287 ILE A 382 ASN A 383 GLN A 384 SITE 5 AC2 27 GLY A 469 GLU A 514 SER A 517 LEU A 518 SITE 6 AC2 27 TRP A 519 MN A 601 HOH A 803 HOH A 830 SITE 7 AC2 27 HOH A 884 HOH A 887 HOH A 948 CRYST1 142.116 142.116 63.003 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007037 0.004063 0.000000 0.00000 SCALE2 0.000000 0.008125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015872 0.00000