HEADER UNKNOWN FUNCTION 08-FEB-17 5UQP TITLE THE CRYSTAL STRUCTURE OF CUPIN PROTEIN FROM RHODOCOCCUS JOSTII RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS JOSTII (STRAIN RHA1); SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: RHA1_RO08652; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS CUPIN PROTEIN, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, MCSG, ENZYME DISCOVERY FOR NATURAL PRODUCT KEYWDS 3 BIOSYNTHESIS, NATPRO, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,S.CLANCY,G.N.PHILLIPS JR.,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG),ENZYME DISCOVERY FOR NATURAL PRODUCT AUTHOR 3 BIOSYNTHESIS (NATPRO) REVDAT 4 06-MAR-24 5UQP 1 LINK REVDAT 3 01-JAN-20 5UQP 1 REMARK REVDAT 2 20-SEP-17 5UQP 1 REMARK REVDAT 1 22-FEB-17 5UQP 0 JRNL AUTH K.TAN,H.LI,S.CLANCY,G.N.PHILLIPS JR.,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF CUPIN PROTEIN FROM RHODOCOCCUS JRNL TITL 2 JOSTII RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2214 - 4.5900 1.00 2667 149 0.1718 0.1892 REMARK 3 2 4.5900 - 3.6436 1.00 2509 148 0.1396 0.1779 REMARK 3 3 3.6436 - 3.1831 1.00 2494 125 0.1538 0.1742 REMARK 3 4 3.1831 - 2.8921 1.00 2487 119 0.1721 0.2083 REMARK 3 5 2.8921 - 2.6849 1.00 2446 126 0.1787 0.2260 REMARK 3 6 2.6849 - 2.5266 1.00 2452 139 0.1907 0.2376 REMARK 3 7 2.5266 - 2.4001 0.98 2367 137 0.2099 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1802 REMARK 3 ANGLE : 1.325 2457 REMARK 3 CHIRALITY : 0.085 267 REMARK 3 PLANARITY : 0.008 322 REMARK 3 DIHEDRAL : 8.950 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8405 44.5471 -15.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.7288 T22: 0.6600 REMARK 3 T33: 0.4751 T12: 0.1524 REMARK 3 T13: -0.0674 T23: -0.2125 REMARK 3 L TENSOR REMARK 3 L11: 2.0209 L22: 8.3946 REMARK 3 L33: 2.7482 L12: 3.5233 REMARK 3 L13: -2.2599 L23: -4.6003 REMARK 3 S TENSOR REMARK 3 S11: -0.5634 S12: 0.8392 S13: -0.8740 REMARK 3 S21: -0.6052 S22: 0.1649 S23: -0.5614 REMARK 3 S31: 1.4959 S32: 0.1956 S33: 0.1973 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4011 58.9771 -23.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.4295 T22: 0.5801 REMARK 3 T33: 0.3093 T12: 0.2607 REMARK 3 T13: -0.0111 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 8.2813 L22: 6.1781 REMARK 3 L33: 6.9620 L12: 7.0338 REMARK 3 L13: -6.6410 L23: -5.0683 REMARK 3 S TENSOR REMARK 3 S11: -0.1712 S12: -0.1317 S13: 0.5756 REMARK 3 S21: -0.2849 S22: 0.2732 S23: 0.2470 REMARK 3 S31: -0.1630 S32: -0.4933 S33: -0.1487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7887 53.7636 -16.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.3550 T22: 0.5511 REMARK 3 T33: 0.3187 T12: 0.2502 REMARK 3 T13: -0.1201 T23: -0.1586 REMARK 3 L TENSOR REMARK 3 L11: 3.0123 L22: 4.2851 REMARK 3 L33: 1.9801 L12: -3.3079 REMARK 3 L13: -2.2009 L23: 1.8519 REMARK 3 S TENSOR REMARK 3 S11: 0.1571 S12: 0.9290 S13: -1.0009 REMARK 3 S21: 0.1209 S22: -0.2374 S23: 0.5558 REMARK 3 S31: 0.4385 S32: 0.2036 S33: 0.1490 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0950 66.4970 -7.4602 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.2297 REMARK 3 T33: 0.2206 T12: 0.0770 REMARK 3 T13: -0.0292 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 9.0677 L22: 1.5310 REMARK 3 L33: 4.6352 L12: -0.9269 REMARK 3 L13: -6.4303 L23: 0.7534 REMARK 3 S TENSOR REMARK 3 S11: 0.0964 S12: 0.5659 S13: -0.3333 REMARK 3 S21: -0.1096 S22: -0.2110 S23: 0.3555 REMARK 3 S31: 0.3244 S32: -0.2886 S33: 0.1208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4015 62.0929 5.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.3748 T22: 0.2187 REMARK 3 T33: 0.3718 T12: 0.0261 REMARK 3 T13: 0.0726 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 9.2028 L22: 1.8213 REMARK 3 L33: 3.9934 L12: 0.0088 REMARK 3 L13: -3.1405 L23: 0.9407 REMARK 3 S TENSOR REMARK 3 S11: -0.8648 S12: -0.6816 S13: -0.6361 REMARK 3 S21: 0.7086 S22: 0.1175 S23: 0.3353 REMARK 3 S31: 0.7873 S32: 0.2667 S33: 0.5813 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3656 71.7999 0.2082 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.2843 REMARK 3 T33: 0.1795 T12: 0.0563 REMARK 3 T13: -0.0479 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.3305 L22: 4.1968 REMARK 3 L33: 0.6342 L12: -2.2785 REMARK 3 L13: -0.9769 L23: 1.5220 REMARK 3 S TENSOR REMARK 3 S11: 0.3735 S12: 0.3459 S13: -0.0362 REMARK 3 S21: -0.2328 S22: -0.1303 S23: 0.2240 REMARK 3 S31: 0.3497 S32: 0.1839 S33: -0.1335 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4063 72.8588 11.1288 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.1928 REMARK 3 T33: 0.2167 T12: 0.0401 REMARK 3 T13: 0.0282 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 7.8726 L22: 8.9404 REMARK 3 L33: 5.9047 L12: -5.5199 REMARK 3 L13: 3.7333 L23: -3.8950 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: -0.4909 S13: -0.3795 REMARK 3 S21: 0.4290 S22: 0.2134 S23: 0.1816 REMARK 3 S31: 0.0299 S32: 0.1613 S33: -0.1287 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0987 68.7349 7.1121 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.3223 REMARK 3 T33: 0.1674 T12: 0.1062 REMARK 3 T13: 0.0014 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.4154 L22: 2.1621 REMARK 3 L33: 1.6948 L12: -1.7180 REMARK 3 L13: -0.4589 L23: 0.2508 REMARK 3 S TENSOR REMARK 3 S11: -0.2519 S12: -0.4702 S13: -0.1250 REMARK 3 S21: 0.3074 S22: 0.2309 S23: -0.0425 REMARK 3 S31: 0.2670 S32: 0.2861 S33: 0.0194 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8843 69.0039 -0.3620 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.1423 REMARK 3 T33: 0.1728 T12: -0.0062 REMARK 3 T13: -0.0441 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.3223 L22: 1.9126 REMARK 3 L33: 4.5259 L12: 0.6292 REMARK 3 L13: -1.5280 L23: -0.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.1631 S12: 0.1844 S13: 0.1204 REMARK 3 S21: 0.0338 S22: -0.0426 S23: 0.1572 REMARK 3 S31: 0.1508 S32: -0.0104 S33: -0.0550 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7325 70.3679 -22.6621 REMARK 3 T TENSOR REMARK 3 T11: 0.5529 T22: 0.6378 REMARK 3 T33: 0.3145 T12: -0.0583 REMARK 3 T13: -0.0792 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 6.1458 L22: 9.6470 REMARK 3 L33: 5.8445 L12: 7.1730 REMARK 3 L13: -5.6354 L23: -7.4909 REMARK 3 S TENSOR REMARK 3 S11: -0.9250 S12: 1.9036 S13: 0.3171 REMARK 3 S21: -1.7643 S22: 0.9088 S23: 0.4562 REMARK 3 S31: 1.7253 S32: -1.4077 S33: 0.1563 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7892 60.1941 -5.2251 REMARK 3 T TENSOR REMARK 3 T11: 0.4865 T22: 0.2270 REMARK 3 T33: 0.4856 T12: -0.0513 REMARK 3 T13: 0.1052 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 6.6805 L22: 7.2587 REMARK 3 L33: 7.4836 L12: 5.7151 REMARK 3 L13: -5.5535 L23: -7.3470 REMARK 3 S TENSOR REMARK 3 S11: -0.8402 S12: 0.3479 S13: -0.5546 REMARK 3 S21: -0.3270 S22: -0.2256 S23: 0.4661 REMARK 3 S31: 2.1060 S32: -0.2493 S33: 0.4484 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0166 63.0354 -12.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.3185 T22: 0.3121 REMARK 3 T33: 0.3101 T12: 0.0588 REMARK 3 T13: -0.0983 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.7020 L22: 2.2614 REMARK 3 L33: 7.6376 L12: -2.4556 REMARK 3 L13: -5.1935 L23: 2.9203 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.7578 S13: -0.4085 REMARK 3 S21: 0.1146 S22: -0.0821 S23: 0.0283 REMARK 3 S31: 0.3748 S32: -0.3608 S33: 0.1553 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4323 62.3837 -15.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.6312 REMARK 3 T33: 0.3062 T12: 0.3047 REMARK 3 T13: -0.0970 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 6.6911 L22: 0.5020 REMARK 3 L33: 0.5013 L12: -0.9598 REMARK 3 L13: -1.2399 L23: 0.3346 REMARK 3 S TENSOR REMARK 3 S11: 0.3620 S12: 0.2296 S13: 0.6308 REMARK 3 S21: -0.5777 S22: -0.1334 S23: -0.1782 REMARK 3 S31: -0.5317 S32: 0.0914 S33: -0.0833 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9291 61.3140 -8.1135 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.7225 REMARK 3 T33: 0.2918 T12: 0.3838 REMARK 3 T13: 0.0266 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 3.7447 L22: 3.1929 REMARK 3 L33: 0.6981 L12: -3.4294 REMARK 3 L13: -1.3009 L23: 1.2285 REMARK 3 S TENSOR REMARK 3 S11: -0.2517 S12: -0.1275 S13: 0.0584 REMARK 3 S21: -0.1237 S22: -0.0969 S23: 0.0927 REMARK 3 S31: -0.1691 S32: 0.4133 S33: -0.3958 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1585 65.7847 -9.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.6952 REMARK 3 T33: 0.4763 T12: 0.2250 REMARK 3 T13: -0.0792 T23: -0.1955 REMARK 3 L TENSOR REMARK 3 L11: 3.1964 L22: 2.4051 REMARK 3 L33: 1.8365 L12: 0.1507 REMARK 3 L13: -1.1425 L23: 0.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: -0.6447 S13: 0.9541 REMARK 3 S21: -0.0074 S22: 0.2844 S23: -0.3351 REMARK 3 S31: -0.2777 S32: 0.5230 S33: -0.1159 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM IODIDE, 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.69167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.38333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.03750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.72917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.34583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.69167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.38333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.72917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.03750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.34583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -316.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 69.72400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 120.76551 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -13.34583 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 HIS A 12 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 VAL B 6 REMARK 465 THR B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 VAL B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 13 OG REMARK 470 VAL A 14 CG1 CG2 REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 HIS B 12 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 102 O HOH A 301 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 74 NE2 GLN B 74 10664 2.06 REMARK 500 O HOH A 351 O HOH A 356 12565 2.16 REMARK 500 NE2 GLN B 74 NE2 GLN B 74 10664 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 128.30 -38.15 REMARK 500 VAL B 44 -8.08 -56.90 REMARK 500 PRO B 46 22.95 -79.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 HIS A 65 NE2 94.4 REMARK 620 3 GLU A 69 OE2 168.5 82.5 REMARK 620 4 HIS A 103 NE2 104.4 93.3 86.9 REMARK 620 5 HOH A 338 O 89.6 175.5 93.2 87.9 REMARK 620 6 HOH A 342 O 78.9 83.9 89.8 175.9 94.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD1 REMARK 620 2 HIS B 65 NE2 99.9 REMARK 620 3 GLU B 69 OE1 171.2 87.5 REMARK 620 4 HIS B 103 NE2 98.6 93.3 85.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC109888 RELATED DB: TARGETTRACK DBREF 5UQP A 1 122 UNP Q0RYE0 Q0RYE0_RHOJR 1 122 DBREF 5UQP B 1 122 UNP Q0RYE0 Q0RYE0_RHOJR 1 122 SEQADV 5UQP SER A -2 UNP Q0RYE0 EXPRESSION TAG SEQADV 5UQP ASN A -1 UNP Q0RYE0 EXPRESSION TAG SEQADV 5UQP ALA A 0 UNP Q0RYE0 EXPRESSION TAG SEQADV 5UQP SER B -2 UNP Q0RYE0 EXPRESSION TAG SEQADV 5UQP ASN B -1 UNP Q0RYE0 EXPRESSION TAG SEQADV 5UQP ALA B 0 UNP Q0RYE0 EXPRESSION TAG SEQRES 1 A 125 SER ASN ALA MET THR THR ASP SER VAL THR GLN GLY VAL SEQRES 2 A 125 ALA HIS SER VAL ASN GLY ARG LEU PRO GLU LEU ASP PHE SEQRES 3 A 125 GLU ASN ARG PRO SER GLY ALA LYS LEU GLY ILE PHE ASP SEQRES 4 A 125 LEU PRO LYS LEU GLU VAL SER VAL ALA PRO PHE THR LEU SEQRES 5 A 125 ALA HIS ILE ARG VAL PRO GLY GLY VAL THR THR ALA GLU SEQRES 6 A 125 ASP HIS HIS GLU VAL ARG GLU ILE TRP LEU VAL GLN SER SEQRES 7 A 125 GLY SER GLY ILE LEU THR LEU ASP GLY VAL ARG SER ARG SEQRES 8 A 125 VAL ARG ALA GLY ASP THR LEU TYR TYR GLU SER TYR ARG SEQRES 9 A 125 ARG HIS GLN LEU HIS ASN ASP GLY ASP SER PRO VAL GLU SEQRES 10 A 125 ILE VAL SER ILE TRP TRP ARG PRO SEQRES 1 B 125 SER ASN ALA MET THR THR ASP SER VAL THR GLN GLY VAL SEQRES 2 B 125 ALA HIS SER VAL ASN GLY ARG LEU PRO GLU LEU ASP PHE SEQRES 3 B 125 GLU ASN ARG PRO SER GLY ALA LYS LEU GLY ILE PHE ASP SEQRES 4 B 125 LEU PRO LYS LEU GLU VAL SER VAL ALA PRO PHE THR LEU SEQRES 5 B 125 ALA HIS ILE ARG VAL PRO GLY GLY VAL THR THR ALA GLU SEQRES 6 B 125 ASP HIS HIS GLU VAL ARG GLU ILE TRP LEU VAL GLN SER SEQRES 7 B 125 GLY SER GLY ILE LEU THR LEU ASP GLY VAL ARG SER ARG SEQRES 8 B 125 VAL ARG ALA GLY ASP THR LEU TYR TYR GLU SER TYR ARG SEQRES 9 B 125 ARG HIS GLN LEU HIS ASN ASP GLY ASP SER PRO VAL GLU SEQRES 10 B 125 ILE VAL SER ILE TRP TRP ARG PRO HET ZN A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET SO4 A 205 5 HET ZN B 201 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 3(CL 1-) FORMUL 7 SO4 O4 S 2- FORMUL 9 HOH *87(H2 O) SHEET 1 AA1 6 PHE A 23 ASN A 25 0 SHEET 2 AA1 6 LYS A 31 ILE A 34 -1 O LEU A 32 N GLU A 24 SHEET 3 AA1 6 THR B 48 VAL B 54 -1 O HIS B 51 N GLY A 33 SHEET 4 AA1 6 VAL B 113 TRP B 120 -1 O SER B 117 N ALA B 50 SHEET 5 AA1 6 ARG B 68 SER B 75 -1 N GLN B 74 O GLU B 114 SHEET 6 AA1 6 THR B 94 TYR B 97 -1 O TYR B 97 N GLU B 69 SHEET 1 AA2 2 LYS A 39 SER A 43 0 SHEET 2 AA2 2 LYS B 39 SER B 43 -1 O LEU B 40 N VAL A 42 SHEET 1 AA3 6 THR A 94 TYR A 97 0 SHEET 2 AA3 6 ARG A 68 SER A 75 -1 N GLU A 69 O TYR A 97 SHEET 3 AA3 6 VAL A 113 TRP A 120 -1 O GLU A 114 N GLN A 74 SHEET 4 AA3 6 THR A 48 VAL A 54 -1 N ALA A 50 O SER A 117 SHEET 5 AA3 6 LYS B 31 ILE B 34 -1 O GLY B 33 N HIS A 51 SHEET 6 AA3 6 PHE B 23 ASN B 25 -1 N GLU B 24 O LEU B 32 SHEET 1 AA4 3 VAL A 85 ARG A 90 0 SHEET 2 AA4 3 SER A 77 LEU A 82 -1 N LEU A 80 O SER A 87 SHEET 3 AA4 3 HIS A 103 HIS A 106 -1 O GLN A 104 N THR A 81 SHEET 1 AA5 3 VAL B 85 ARG B 90 0 SHEET 2 AA5 3 SER B 77 LEU B 82 -1 N GLY B 78 O VAL B 89 SHEET 3 AA5 3 HIS B 103 HIS B 106 -1 O GLN B 104 N THR B 81 LINK OD2 ASP A 63 ZN ZN A 201 1555 1555 2.10 LINK NE2 HIS A 65 ZN ZN A 201 1555 1555 2.26 LINK OE2 GLU A 69 ZN ZN A 201 1555 1555 2.11 LINK NE2 HIS A 103 ZN ZN A 201 1555 1555 2.17 LINK ZN ZN A 201 O HOH A 338 1555 1555 2.36 LINK ZN ZN A 201 O HOH A 342 1555 1555 2.57 LINK OD1 ASP B 63 ZN ZN B 201 1555 1555 2.31 LINK NE2 HIS B 65 ZN ZN B 201 1555 1555 2.28 LINK OE1 GLU B 69 ZN ZN B 201 1555 1555 2.03 LINK NE2 HIS B 103 ZN ZN B 201 1555 1555 2.27 SITE 1 AC1 6 ASP A 63 HIS A 65 GLU A 69 HIS A 103 SITE 2 AC1 6 HOH A 338 HOH A 342 SITE 1 AC2 4 GLY A 76 ARG A 88 SO4 A 205 HOH A 310 SITE 1 AC3 2 ALA A 61 SER B 28 SITE 1 AC4 2 SER A 28 ALA B 61 SITE 1 AC5 1 CL A 202 SITE 1 AC6 6 ASP B 63 HIS B 65 GLU B 69 HIS B 103 SITE 2 AC6 6 HOH B 301 HOH B 329 CRYST1 139.448 139.448 80.075 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007171 0.004140 0.000000 0.00000 SCALE2 0.000000 0.008281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012488 0.00000