HEADER SUGAR BINDING PROTEIN 08-FEB-17 5UQZ TITLE STRUCTURAL ANALYSIS OF THE GLUCAN BINDING PROTEIN C OF STREPTOCOCCUS TITLE 2 MUTANS PROVIDES EVIDENCE THAT IT MEDIATES BOTH SUCROSE-INDEPENDENT TITLE 3 AND -DEPENDENT ADHERENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCAN-BINDING PROTEIN C, GBPC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 124-477; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS UA159; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: ATCC 700610 / UA159; SOURCE 5 GENE: GBPC, SMU_1396; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-23D KEYWDS SUGAR BINDING, BETA-SUPERSANDWICH, GLUCAN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.R.LARSON,S.PURUSHOTHAM,J.MIEHER,R.WU,K.R.RAJASHANKAR,H.WU, AUTHOR 2 C.DEIVANAYAGAM REVDAT 5 06-MAR-24 5UQZ 1 LINK REVDAT 4 11-DEC-19 5UQZ 1 REMARK REVDAT 3 04-JUL-18 5UQZ 1 JRNL REVDAT 2 09-MAY-18 5UQZ 1 JRNL REVDAT 1 07-MAR-18 5UQZ 0 JRNL AUTH J.L.MIEHER,M.R.LARSON,N.SCHORMANN,S.PURUSHOTHAM,R.WU, JRNL AUTH 2 K.R.RAJASHANKAR,H.WU,C.DEIVANAYAGAM JRNL TITL GLUCAN BINDING PROTEIN C OF STREPTOCOCCUS MUTANS MEDIATES JRNL TITL 2 BOTH SUCROSE-INDEPENDENT AND SUCROSE-DEPENDENT ADHERENCE. JRNL REF INFECT. IMMUN. V. 86 2018 JRNL REFN ESSN 1098-5522 JRNL PMID 29685986 JRNL DOI 10.1128/IAI.00146-18 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 135266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.010 REMARK 3 FREE R VALUE TEST SET COUNT : 10836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5547 - 3.5704 0.96 4509 393 0.1301 0.1388 REMARK 3 2 3.5704 - 2.8341 0.99 4528 407 0.1219 0.1430 REMARK 3 3 2.8341 - 2.4759 0.99 4479 437 0.1325 0.1377 REMARK 3 4 2.4759 - 2.2496 0.99 4517 360 0.1204 0.1477 REMARK 3 5 2.2496 - 2.0883 0.94 4242 391 0.1139 0.1389 REMARK 3 6 2.0883 - 1.9652 0.99 4463 393 0.1049 0.1153 REMARK 3 7 1.9652 - 1.8668 0.98 4400 391 0.1037 0.1330 REMARK 3 8 1.8668 - 1.7855 0.98 4458 363 0.1062 0.1398 REMARK 3 9 1.7855 - 1.7168 0.98 4428 383 0.1043 0.1292 REMARK 3 10 1.7168 - 1.6576 0.98 4375 430 0.1030 0.1312 REMARK 3 11 1.6576 - 1.6057 0.97 4355 394 0.0987 0.1385 REMARK 3 12 1.6057 - 1.5598 0.93 4224 340 0.0962 0.1283 REMARK 3 13 1.5598 - 1.5188 0.93 4190 365 0.1006 0.1322 REMARK 3 14 1.5188 - 1.4817 0.94 4309 351 0.1048 0.1311 REMARK 3 15 1.4817 - 1.4480 0.93 4189 382 0.1058 0.1357 REMARK 3 16 1.4480 - 1.4172 0.93 4161 347 0.1155 0.1397 REMARK 3 17 1.4172 - 1.3889 0.93 4200 364 0.1224 0.1572 REMARK 3 18 1.3889 - 1.3626 0.92 4156 363 0.1226 0.1648 REMARK 3 19 1.3626 - 1.3383 0.91 4123 349 0.1337 0.1660 REMARK 3 20 1.3383 - 1.3156 0.90 3954 338 0.1364 0.1573 REMARK 3 21 1.3156 - 1.2944 0.87 3955 327 0.1427 0.1891 REMARK 3 22 1.2944 - 1.2745 0.86 3900 327 0.1558 0.1814 REMARK 3 23 1.2745 - 1.2557 0.86 3876 328 0.1519 0.1874 REMARK 3 24 1.2557 - 1.2380 0.86 3901 321 0.1619 0.1827 REMARK 3 25 1.2380 - 1.2213 0.86 3819 361 0.1731 0.2166 REMARK 3 26 1.2213 - 1.2055 0.85 3888 315 0.1828 0.2105 REMARK 3 27 1.2055 - 1.1904 0.85 3820 333 0.1857 0.2083 REMARK 3 28 1.1904 - 1.1760 0.84 3746 337 0.1861 0.1996 REMARK 3 29 1.1760 - 1.1624 0.83 3759 313 0.1961 0.2268 REMARK 3 30 1.1624 - 1.1493 0.78 3506 333 0.2149 0.2480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.5, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.54900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.29800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.54900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.29800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 208.63066 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.52954 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 657 O HOH A 1017 2.01 REMARK 500 O HOH A 948 O HOH A 1006 2.01 REMARK 500 O HOH A 817 O HOH A 1011 2.07 REMARK 500 OE1 GLU A 433 O HOH A 601 2.07 REMARK 500 O HOH A 942 O HOH A 983 2.10 REMARK 500 O HOH A 817 O HOH A 1069 2.13 REMARK 500 O ASN A 382 O HOH A 602 2.14 REMARK 500 OE1 GLU A 288 O HOH A 603 2.17 REMARK 500 O HOH A 960 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 811 O HOH A 1127 4545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 197 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 MET A 322 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 189 78.95 -155.74 REMARK 500 ASN A 261 60.27 60.69 REMARK 500 THR A 302 -113.83 59.64 REMARK 500 ASP A 357 79.47 -118.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1123 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1124 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1125 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 347 O REMARK 620 2 SER A 347 OG 71.3 REMARK 620 3 ASN A 349 OD1 77.5 86.2 REMARK 620 4 GLU A 360 OE1 72.4 143.2 80.2 REMARK 620 5 HOH A 620 O 142.6 133.8 77.5 76.2 REMARK 620 6 HOH A 657 O 135.9 69.3 80.9 140.1 65.5 REMARK 620 7 HOH A 761 O 73.8 90.1 150.7 85.7 123.7 124.6 REMARK 620 8 HOH A 942 O 147.0 104.4 135.4 109.3 63.8 63.9 73.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 DBREF 5UQZ A 124 477 UNP Q8DTF1 Q8DTF1_STRMU 124 477 SEQRES 1 A 354 ASN THR ALA VAL ALA ASP TYR GLN LYS ALA LYS ALA GLU SEQRES 2 A 354 PHE PRO GLN LYS GLN GLU GLN TYR ASN LYS ASP PHE GLU SEQRES 3 A 354 LYS TYR GLN SER ASP VAL LYS GLU TYR GLU ALA GLN LYS SEQRES 4 A 354 ALA ALA TYR GLU GLN TYR LYS LYS GLU VAL ALA GLN GLY SEQRES 5 A 354 LEU ALA SER GLY ARG VAL GLU LYS ALA GLN GLY LEU VAL SEQRES 6 A 354 PHE ILE ASN GLU PRO GLU ALA LYS LEU SER ILE GLU GLY SEQRES 7 A 354 VAL ASN GLN TYR LEU THR LYS GLU ALA ARG GLN LYS HIS SEQRES 8 A 354 ALA THR GLU ASP ILE LEU GLN GLN TYR ASN THR ASP ASN SEQRES 9 A 354 TYR THR ALA SER ASP PHE THR GLN ALA ASN PRO TYR ASP SEQRES 10 A 354 PRO LYS GLU ASP THR TRP PHE LYS MET LYS VAL GLY ASP SEQRES 11 A 354 GLN ILE SER VAL THR TYR ASP ASN ILE VAL ASN SER LYS SEQRES 12 A 354 TYR ASN ASP LYS LYS ILE SER LYS VAL LYS ILE ASN TYR SEQRES 13 A 354 THR LEU ASN SER SER THR ASN ASN GLU GLY SER ALA LEU SEQRES 14 A 354 VAL ASN LEU PHE HIS ASP PRO THR LYS THR ILE PHE ILE SEQRES 15 A 354 GLY ALA GLN THR SER ASN ALA GLY ARG ASN ASP LYS ILE SEQRES 16 A 354 SER VAL THR MET GLN ILE ILE PHE TYR ASP GLU ASN GLY SEQRES 17 A 354 ASN GLU ILE ASP LEU SER GLY ASN ASN ALA ILE MET SER SEQRES 18 A 354 LEU SER SER LEU ASN HIS TRP THR THR LYS TYR GLY ASP SEQRES 19 A 354 HIS VAL GLU LYS VAL ASN LEU GLY ASP ASN GLU PHE VAL SEQRES 20 A 354 LYS ILE PRO GLY SER SER VAL ASP LEU HIS GLY ASN GLU SEQRES 21 A 354 ILE TYR SER ALA LYS ASP ASN GLN TYR LYS ALA ASN GLY SEQRES 22 A 354 ALA THR PHE ASN GLY ASP GLY ALA ASP GLY TRP ASP ALA SEQRES 23 A 354 VAL ASN ALA ASP GLY THR PRO ARG ALA ALA THR ALA TYR SEQRES 24 A 354 TYR GLY ALA GLY ALA MET THR TYR LYS GLY GLU PRO PHE SEQRES 25 A 354 THR PHE THR VAL GLY GLY ASN ASP GLN ASN LEU PRO THR SEQRES 26 A 354 THR ILE TRP PHE ALA THR ASN SER ALA VAL ALA VAL PRO SEQRES 27 A 354 LYS ASP PRO GLY ALA LYS PRO THR PRO PRO GLU LYS PRO SEQRES 28 A 354 GLU LEU LYS HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *527(H2 O) HELIX 1 AA1 THR A 125 GLY A 175 1 51 HELIX 2 AA2 LEU A 176 SER A 178 5 3 HELIX 3 AA3 GLY A 179 ALA A 184 1 6 HELIX 4 AA4 THR A 207 ALA A 215 1 9 HELIX 5 AA5 ASP A 218 TYR A 223 1 6 HELIX 6 AA6 ASN A 224 TYR A 228 5 5 HELIX 7 AA7 THR A 229 SER A 231 5 3 HELIX 8 AA8 TYR A 392 GLY A 396 5 5 HELIX 9 AA9 ALA A 418 ALA A 425 5 8 SHEET 1 AA1 3 LEU A 187 VAL A 188 0 SHEET 2 AA1 3 LYS A 266 TYR A 267 -1 O LYS A 266 N VAL A 188 SHEET 3 AA1 3 LYS A 270 LYS A 271 -1 O LYS A 270 N TYR A 267 SHEET 1 AA2 7 LYS A 196 GLU A 200 0 SHEET 2 AA2 7 ILE A 255 ASP A 260 -1 O THR A 258 N SER A 198 SHEET 3 AA2 7 LYS A 274 SER A 283 -1 O VAL A 275 N TYR A 259 SHEET 4 AA2 7 LYS A 317 TYR A 327 -1 O SER A 319 N ASN A 282 SHEET 5 AA2 7 PHE A 435 ASN A 442 -1 O PHE A 435 N MET A 322 SHEET 6 AA2 7 GLY A 356 ASN A 363 -1 N ASN A 363 O THR A 436 SHEET 7 AA2 7 HIS A 350 THR A 353 -1 N THR A 353 O GLY A 356 SHEET 1 AA3 8 LYS A 196 GLU A 200 0 SHEET 2 AA3 8 ILE A 255 ASP A 260 -1 O THR A 258 N SER A 198 SHEET 3 AA3 8 LYS A 274 SER A 283 -1 O VAL A 275 N TYR A 259 SHEET 4 AA3 8 LYS A 317 TYR A 327 -1 O SER A 319 N ASN A 282 SHEET 5 AA3 8 PHE A 435 ASN A 442 -1 O PHE A 435 N MET A 322 SHEET 6 AA3 8 GLY A 356 ASN A 363 -1 N ASN A 363 O THR A 436 SHEET 7 AA3 8 GLU A 383 SER A 386 -1 O ILE A 384 N VAL A 362 SHEET 8 AA3 8 VAL A 377 HIS A 380 -1 N HIS A 380 O GLU A 383 SHEET 1 AA4 2 TYR A 205 LEU A 206 0 SHEET 2 AA4 2 PHE A 233 THR A 234 -1 O THR A 234 N TYR A 205 SHEET 1 AA5 4 THR A 245 LYS A 250 0 SHEET 2 AA5 4 SER A 290 LEU A 295 -1 O LEU A 295 N THR A 245 SHEET 3 AA5 4 ILE A 303 ALA A 307 -1 O PHE A 304 N ASN A 294 SHEET 4 AA5 4 THR A 448 PHE A 452 -1 O ILE A 450 N ILE A 305 SHEET 1 AA6 3 ILE A 342 LEU A 345 0 SHEET 2 AA6 3 GLY A 426 THR A 429 -1 O MET A 428 N MET A 343 SHEET 3 AA6 3 GLU A 368 VAL A 370 -1 N GLU A 368 O THR A 429 LINK O SER A 347 CA CA A 501 1555 1555 2.36 LINK OG SER A 347 CA CA A 501 1555 1555 2.46 LINK OD1 ASN A 349 CA CA A 501 1555 1555 2.34 LINK OE1 GLU A 360 CA CA A 501 1555 1555 2.47 LINK CA CA A 501 O HOH A 620 1555 1555 2.56 LINK CA CA A 501 O HOH A 657 1555 1555 2.46 LINK CA CA A 501 O HOH A 761 1555 1555 2.38 LINK CA CA A 501 O HOH A 942 1555 1555 2.48 SITE 1 AC1 7 SER A 347 ASN A 349 GLU A 360 HOH A 620 SITE 2 AC1 7 HOH A 657 HOH A 761 HOH A 942 CRYST1 213.098 48.596 40.775 90.00 96.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004693 0.000000 0.000517 0.00000 SCALE2 0.000000 0.020578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024673 0.00000