HEADER CELL ADHESION 14-FEB-17 5UTG TITLE RED ABALONE LYSIN F104A COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGG-LYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-152; COMPND 5 SYNONYM: SPERM-LYSIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALIOTIS RUFESCENS; SOURCE 3 ORGANISM_COMMON: CALIFORNIA RED ABALONE; SOURCE 4 ORGANISM_TAXID: 6454; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS FERTILIZATION PROTEIN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.B.WILBURN,L.M.TUTTLE REVDAT 4 01-MAY-24 5UTG 1 REMARK REVDAT 3 11-DEC-19 5UTG 1 REMARK REVDAT 2 21-FEB-18 5UTG 1 JRNL REVDAT 1 31-JAN-18 5UTG 0 JRNL AUTH D.B.WILBURN,L.M.TUTTLE,R.E.KLEVIT,W.J.SWANSON JRNL TITL SOLUTION STRUCTURE OF SPERM LYSIN YIELDS NOVEL INSIGHTS INTO JRNL TITL 2 MOLECULAR DYNAMICS OF RAPID PROTEIN EVOLUTION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 1310 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29348201 JRNL DOI 10.1073/PNAS.1709061115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.43, CNS REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 TORSION ANGLE DYNAMICS, MOLECULAR DYNAMICS. REMARK 3 THE FLEXIBLE GLY0 RESIDUE IS LEFT OUT OF THE COORDINATES, SINCE IT REMARK 3 IS UNRESTRAINED AND NOT PRESENT IN THE NATIVE SEQUENCE OF RED REMARK 3 ABALONE LYSIN. REMARK 4 REMARK 4 5UTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000225758. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-15N] LYSIN, 200 MM REMARK 210 NATURAL ABUNDUNCE SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 93% H2O/7% D2O; 300 UM [U-13C; REMARK 210 U-15N] LYSIN, 200 MM SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 93% H2O/7% D2O; 300 UM [U-15N] REMARK 210 LYSIN, 5 W/V C12E6/HEXANOL, 200 REMARK 210 MM SODIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 93% H2O/7% D2O; 200 REMARK 210 UM [U-13C; U-15N] LYSIN, 200 MM REMARK 210 SODIUM CHLORIDE, 10 MM TRIS, 93% REMARK 210 H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 HETNOE; 2D 1H-15N T1; 2D 1H-15N REMARK 210 T2; 3D HNHA; 3D HNCO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-15N HSQC-IPAP; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, TOPSPIN, CNS, X REMARK 210 -PLOR NIH 2.43 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 110 61.26 -100.15 REMARK 500 1 TYR A 114 90.77 -69.58 REMARK 500 2 TYR A 5 -100.93 -108.93 REMARK 500 2 ASP A 97 34.98 -148.08 REMARK 500 3 HIS A 4 -125.78 57.49 REMARK 500 3 LYS A 9 -67.10 -106.81 REMARK 500 4 ILE A 96 -76.87 -130.83 REMARK 500 4 TYR A 114 99.17 -68.95 REMARK 500 5 SER A 2 45.28 -92.42 REMARK 500 5 TYR A 5 -70.04 -123.23 REMARK 500 6 ASP A 97 55.61 -147.17 REMARK 500 7 TYR A 5 -68.35 -126.07 REMARK 500 9 TRP A 3 -17.14 68.54 REMARK 500 9 TYR A 5 -97.56 -145.65 REMARK 500 9 PRO A 116 45.30 -79.51 REMARK 500 10 ASP A 97 55.21 -152.60 REMARK 500 11 TYR A 5 -99.46 -107.27 REMARK 500 11 ASP A 97 43.23 -152.93 REMARK 500 13 TRP A 3 -141.55 -113.32 REMARK 500 13 HIS A 4 -118.80 68.02 REMARK 500 13 TYR A 5 -92.16 63.27 REMARK 500 13 LYS A 9 -25.58 -157.16 REMARK 500 13 ASP A 97 34.12 -141.01 REMARK 500 14 SER A 2 -118.52 54.41 REMARK 500 15 TYR A 5 -111.14 -107.62 REMARK 500 15 LYS A 9 -51.26 -121.86 REMARK 500 16 TYR A 5 -90.35 -127.67 REMARK 500 16 MET A 110 79.39 -100.19 REMARK 500 16 TYR A 114 86.93 -69.87 REMARK 500 17 TRP A 3 -89.88 -115.96 REMARK 500 17 TYR A 5 -94.88 70.35 REMARK 500 18 HIS A 4 -160.65 58.07 REMARK 500 18 ASP A 97 38.67 -155.20 REMARK 500 20 TYR A 5 -90.25 -87.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30246 RELATED DB: BMRB REMARK 900 RED ABALONE LYSIN F104A DBREF 5UTG A 1 134 UNP P04552 ELYS_HALRU 19 152 SEQADV 5UTG GLY A 0 UNP P04552 EXPRESSION TAG SEQADV 5UTG ALA A 104 UNP P04552 PHE 122 ENGINEERED MUTATION SEQRES 1 A 135 GLY ARG SER TRP HIS TYR VAL GLU PRO LYS PHE LEU ASN SEQRES 2 A 135 LYS ALA PHE GLU VAL ALA LEU LYS VAL GLN ILE ILE ALA SEQRES 3 A 135 GLY PHE ASP ARG GLY LEU VAL LYS TRP LEU ARG VAL HIS SEQRES 4 A 135 GLY ARG THR LEU SER THR VAL GLN LYS LYS ALA LEU TYR SEQRES 5 A 135 PHE VAL ASN ARG ARG TYR MET GLN THR HIS TRP ALA ASN SEQRES 6 A 135 TYR MET LEU TRP ILE ASN LYS LYS ILE ASP ALA LEU GLY SEQRES 7 A 135 ARG THR PRO VAL VAL GLY ASP TYR THR ARG LEU GLY ALA SEQRES 8 A 135 GLU ILE GLY ARG ARG ILE ASP MET ALA TYR PHE TYR ASP SEQRES 9 A 135 ALA LEU LYS ASP LYS ASN MET ILE PRO LYS TYR LEU PRO SEQRES 10 A 135 TYR MET GLU GLU ILE ASN ARG MET ARG PRO ALA ASP VAL SEQRES 11 A 135 PRO VAL LYS TYR MET HELIX 1 AA1 ASN A 12 GLY A 39 1 28 HELIX 2 AA2 ARG A 40 LEU A 42 5 3 HELIX 3 AA3 SER A 43 ILE A 69 1 27 HELIX 4 AA4 ILE A 69 GLY A 77 1 9 HELIX 5 AA5 VAL A 81 GLY A 93 1 13 HELIX 6 AA6 ASP A 97 ASN A 109 1 13 HELIX 7 AA7 LEU A 115 MET A 124 1 10 HELIX 8 AA8 ARG A 125 VAL A 129 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1