HEADER OXIDOREDUCTASE 15-FEB-17 5UTX TITLE CRYSTAL STRUCTURE OF THIOREDOXIN-DISULFIDE REDUCTASE FROM VIBRIO TITLE 2 VULNIFICUS CMCP6 - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIOREDOXIN-DISULFIDE REDUCTASE; COMPND 5 EC: 1.8.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS CMCP6; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 GENE: VV1455; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, THIOREDOXIN-DISULFIDE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,S.GRIMSHAW,N.MALTSEVA,R.MULLIGAN,W.F.ANDERSON,A.JOACHIMIAK, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 04-OCT-23 5UTX 1 REMARK REVDAT 2 23-AUG-17 5UTX 1 REMARK REVDAT 1 22-FEB-17 5UTX 0 JRNL AUTH C.CHANG,S.GRIMSHAW,N.MALTSEVA,R.MULLIGAN,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN-DISULFIDE REDUCTASE FROM JRNL TITL 2 VIBRIO VULNIFICUS CMCP6 - APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2614 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 23504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8391 - 4.9188 0.99 2995 151 0.1903 0.2137 REMARK 3 2 4.9188 - 3.9048 1.00 2879 161 0.1652 0.2304 REMARK 3 3 3.9048 - 3.4113 1.00 2861 160 0.1855 0.2417 REMARK 3 4 3.4113 - 3.0995 1.00 2883 141 0.2143 0.2590 REMARK 3 5 3.0995 - 2.8774 1.00 2874 119 0.2269 0.2966 REMARK 3 6 2.8774 - 2.7077 1.00 2833 171 0.2308 0.3089 REMARK 3 7 2.7077 - 2.5721 0.99 2782 175 0.2361 0.3065 REMARK 3 8 2.5721 - 2.4602 0.77 2233 86 0.2521 0.3255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4379 REMARK 3 ANGLE : 0.478 5928 REMARK 3 CHIRALITY : 0.041 681 REMARK 3 PLANARITY : 0.004 779 REMARK 3 DIHEDRAL : 9.695 2598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 78.7074 10.7350 4.6334 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.0059 REMARK 3 T33: 0.1482 T12: 0.0710 REMARK 3 T13: 0.1087 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.1179 L22: 0.1560 REMARK 3 L33: 0.1442 L12: -0.0144 REMARK 3 L13: 0.0172 L23: 0.0776 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.1208 S13: -0.2732 REMARK 3 S21: -0.0280 S22: -0.0384 S23: -0.2388 REMARK 3 S31: 0.1641 S32: -0.0470 S33: 0.0210 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24257 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 1CL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1000, 100 MM POTASSIUM/SODIUM REMARK 280 PHOSPHATE, 200 MM SODIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.39500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.79000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.79000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 41 REMARK 465 GLY A 42 REMARK 465 GLN A 43 REMARK 465 LEU A 44 REMARK 465 THR A 45 REMARK 465 THR A 46 REMARK 465 THR A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 LEU A 316 REMARK 465 ASN A 317 REMARK 465 ASP A 318 REMARK 465 LYS A 319 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 MET B 38 REMARK 465 GLN B 39 REMARK 465 GLN B 40 REMARK 465 GLY B 41 REMARK 465 GLY B 42 REMARK 465 GLN B 43 REMARK 465 LEU B 44 REMARK 465 THR B 45 REMARK 465 THR B 46 REMARK 465 THR B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 VAL B 50 REMARK 465 GLU B 51 REMARK 465 ASN B 52 REMARK 465 TRP B 53 REMARK 465 PRO B 54 REMARK 465 GLY B 55 REMARK 465 ASP B 56 REMARK 465 PRO B 57 REMARK 465 GLU B 58 REMARK 465 GLY B 59 REMARK 465 LEU B 60 REMARK 465 THR B 61 REMARK 465 GLY B 62 REMARK 465 PRO B 63 REMARK 465 GLY B 64 REMARK 465 LEU B 65 REMARK 465 MET B 66 REMARK 465 ASP B 67 REMARK 465 ARG B 68 REMARK 465 MET B 69 REMARK 465 LYS B 70 REMARK 465 GLU B 71 REMARK 465 HIS B 72 REMARK 465 ALA B 73 REMARK 465 GLU B 74 REMARK 465 ASP B 318 REMARK 465 LYS B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 38 CG SD CE REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 84 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 142 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 146 CG OD1 ND2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 ILE B 186 CG1 CG2 CD1 REMARK 470 ASP B 205 CG OD1 OD2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 MET B 216 CG SD CE REMARK 470 ILE B 241 CG1 CG2 CD1 REMARK 470 ASP B 260 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 177 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MET A 237 O HOH A 501 2655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 71.79 43.79 REMARK 500 TRP A 53 144.47 -171.27 REMARK 500 ARG A 178 -155.32 -124.57 REMARK 500 SER A 267 -151.34 58.36 REMARK 500 THR A 276 -157.62 -85.79 REMARK 500 TYR A 292 -54.79 -120.36 REMARK 500 SER B 14 -1.28 -141.15 REMARK 500 GLU B 77 70.46 -61.84 REMARK 500 PHE B 95 123.34 -35.85 REMARK 500 SER B 112 52.88 -145.93 REMARK 500 ALA B 183 -163.07 -129.09 REMARK 500 GLN B 196 -78.66 -78.16 REMARK 500 ASP B 214 -156.40 -113.28 REMARK 500 LYS B 259 106.71 -162.09 REMARK 500 SER B 267 -159.19 56.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 93 PRO B 94 148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07222 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN SEQUENCE MATCHES TO GENBANK 27366093. DBREF 5UTX A 1 319 UNP Q7MLH2 Q7MLH2_VIBVY 3 321 DBREF 5UTX B 1 319 UNP Q7MLH2 Q7MLH2_VIBVY 3 321 SEQADV 5UTX ASP A 67 UNP Q7MLH2 ASN 69 CONFLICT SEQADV 5UTX ASP B 67 UNP Q7MLH2 ASN 69 CONFLICT SEQRES 1 A 319 MET SER ASP MET LYS HIS SER LYS LEU LEU ILE LEU GLY SEQRES 2 A 319 SER GLY PRO ALA GLY TYR THR ALA ALA VAL TYR ALA ALA SEQRES 3 A 319 ARG ALA ASN LEU ASN PRO VAL LEU ILE THR GLY MET GLN SEQRES 4 A 319 GLN GLY GLY GLN LEU THR THR THR THR GLU VAL GLU ASN SEQRES 5 A 319 TRP PRO GLY ASP PRO GLU GLY LEU THR GLY PRO GLY LEU SEQRES 6 A 319 MET ASP ARG MET LYS GLU HIS ALA GLU ARG PHE GLU THR SEQRES 7 A 319 GLU ILE ILE PHE ASP HIS ILE ASN GLU VAL ASP PHE SER SEQRES 8 A 319 THR ARG PRO PHE VAL LEU LYS GLY ASP ALA ALA SER TYR SEQRES 9 A 319 SER CYS ASP ALA LEU ILE ILE SER THR GLY ALA SER ALA SEQRES 10 A 319 LYS TYR LEU GLY LEU GLU SER GLU GLU ALA PHE LYS GLY SEQRES 11 A 319 ARG GLY VAL SER ALA CYS ALA THR CYS ASP GLY PHE PHE SEQRES 12 A 319 TYR ARG ASN GLN LYS VAL ALA VAL VAL GLY GLY GLY ASN SEQRES 13 A 319 THR ALA VAL GLU GLU ALA LEU TYR LEU SER ASN ILE ALA SEQRES 14 A 319 ALA GLU VAL HIS LEU ILE HIS ARG ARG ASP SER PHE ARG SEQRES 15 A 319 ALA GLU LYS ILE LEU ILE ASN ARG LEU MET ASP LYS VAL SEQRES 16 A 319 GLN ASN GLY ASN ILE VAL LEU HIS THR ASP ARG VAL LEU SEQRES 17 A 319 ASP GLU VAL LEU GLY ASP GLU MET GLY VAL THR GLY VAL SEQRES 18 A 319 ARG LEU LYS ASP VAL LYS THR GLY GLY THR GLU GLU LEU SEQRES 19 A 319 ASP VAL MET GLY ALA PHE ILE ALA ILE GLY HIS SER PRO SEQRES 20 A 319 ASN THR GLN ILE PHE GLN GLY GLN LEU ASP MET LYS ASP SEQRES 21 A 319 GLY TYR ILE LEU VAL LYS SER GLY LEU GLU GLY ASN ALA SEQRES 22 A 319 THR GLN THR SER VAL GLU GLY ILE PHE ALA ALA GLY ASP SEQRES 23 A 319 VAL MET ASP HIS ASN TYR ARG GLN ALA ILE THR SER ALA SEQRES 24 A 319 GLY THR GLY CYS MET ALA ALA LEU ASP ALA GLU ARG TYR SEQRES 25 A 319 LEU ASP SER LEU ASN ASP LYS SEQRES 1 B 319 MET SER ASP MET LYS HIS SER LYS LEU LEU ILE LEU GLY SEQRES 2 B 319 SER GLY PRO ALA GLY TYR THR ALA ALA VAL TYR ALA ALA SEQRES 3 B 319 ARG ALA ASN LEU ASN PRO VAL LEU ILE THR GLY MET GLN SEQRES 4 B 319 GLN GLY GLY GLN LEU THR THR THR THR GLU VAL GLU ASN SEQRES 5 B 319 TRP PRO GLY ASP PRO GLU GLY LEU THR GLY PRO GLY LEU SEQRES 6 B 319 MET ASP ARG MET LYS GLU HIS ALA GLU ARG PHE GLU THR SEQRES 7 B 319 GLU ILE ILE PHE ASP HIS ILE ASN GLU VAL ASP PHE SER SEQRES 8 B 319 THR ARG PRO PHE VAL LEU LYS GLY ASP ALA ALA SER TYR SEQRES 9 B 319 SER CYS ASP ALA LEU ILE ILE SER THR GLY ALA SER ALA SEQRES 10 B 319 LYS TYR LEU GLY LEU GLU SER GLU GLU ALA PHE LYS GLY SEQRES 11 B 319 ARG GLY VAL SER ALA CYS ALA THR CYS ASP GLY PHE PHE SEQRES 12 B 319 TYR ARG ASN GLN LYS VAL ALA VAL VAL GLY GLY GLY ASN SEQRES 13 B 319 THR ALA VAL GLU GLU ALA LEU TYR LEU SER ASN ILE ALA SEQRES 14 B 319 ALA GLU VAL HIS LEU ILE HIS ARG ARG ASP SER PHE ARG SEQRES 15 B 319 ALA GLU LYS ILE LEU ILE ASN ARG LEU MET ASP LYS VAL SEQRES 16 B 319 GLN ASN GLY ASN ILE VAL LEU HIS THR ASP ARG VAL LEU SEQRES 17 B 319 ASP GLU VAL LEU GLY ASP GLU MET GLY VAL THR GLY VAL SEQRES 18 B 319 ARG LEU LYS ASP VAL LYS THR GLY GLY THR GLU GLU LEU SEQRES 19 B 319 ASP VAL MET GLY ALA PHE ILE ALA ILE GLY HIS SER PRO SEQRES 20 B 319 ASN THR GLN ILE PHE GLN GLY GLN LEU ASP MET LYS ASP SEQRES 21 B 319 GLY TYR ILE LEU VAL LYS SER GLY LEU GLU GLY ASN ALA SEQRES 22 B 319 THR GLN THR SER VAL GLU GLY ILE PHE ALA ALA GLY ASP SEQRES 23 B 319 VAL MET ASP HIS ASN TYR ARG GLN ALA ILE THR SER ALA SEQRES 24 B 319 GLY THR GLY CYS MET ALA ALA LEU ASP ALA GLU ARG TYR SEQRES 25 B 319 LEU ASP SER LEU ASN ASP LYS HET PO4 A 401 5 HET PO4 B 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *109(H2 O) HELIX 1 AA1 GLY A 15 ALA A 28 1 14 HELIX 2 AA2 PRO A 63 PHE A 76 1 14 HELIX 3 AA3 LEU A 122 PHE A 128 1 7 HELIX 4 AA4 CYS A 136 GLY A 141 1 6 HELIX 5 AA5 PHE A 142 ARG A 145 5 4 HELIX 6 AA6 GLY A 155 ASN A 167 1 13 HELIX 7 AA7 GLU A 184 GLY A 198 1 15 HELIX 8 AA8 THR A 249 LEU A 256 5 8 HELIX 9 AA9 GLY A 285 ASP A 289 5 5 HELIX 10 AB1 GLN A 294 ASP A 314 1 21 HELIX 11 AB2 GLY B 15 ALA B 28 1 14 HELIX 12 AB3 LEU B 122 PHE B 128 1 7 HELIX 13 AB4 CYS B 136 GLY B 141 1 6 HELIX 14 AB5 PHE B 142 ARG B 145 5 4 HELIX 15 AB6 GLY B 155 ASN B 167 1 13 HELIX 16 AB7 GLU B 184 ASN B 197 1 14 HELIX 17 AB8 THR B 249 GLN B 253 5 5 HELIX 18 AB9 GLY B 285 MET B 288 5 4 HELIX 19 AC1 GLN B 294 ASP B 314 1 21 SHEET 1 AA1 6 GLU A 79 ILE A 81 0 SHEET 2 AA1 6 VAL A 33 ILE A 35 1 N LEU A 34 O ILE A 81 SHEET 3 AA1 6 LYS A 5 LEU A 12 1 N ILE A 11 O VAL A 33 SHEET 4 AA1 6 SER A 103 ILE A 111 1 O ILE A 110 N LEU A 10 SHEET 5 AA1 6 PHE A 95 GLY A 99 -1 N LEU A 97 O TYR A 104 SHEET 6 AA1 6 ILE A 85 ASP A 89 -1 N GLU A 87 O LYS A 98 SHEET 1 AA2 5 GLU A 79 ILE A 81 0 SHEET 2 AA2 5 VAL A 33 ILE A 35 1 N LEU A 34 O ILE A 81 SHEET 3 AA2 5 LYS A 5 LEU A 12 1 N ILE A 11 O VAL A 33 SHEET 4 AA2 5 SER A 103 ILE A 111 1 O ILE A 110 N LEU A 10 SHEET 5 AA2 5 ILE A 281 ALA A 283 1 O PHE A 282 N ILE A 111 SHEET 1 AA3 2 ALA A 115 ALA A 117 0 SHEET 2 AA3 2 HIS A 245 PRO A 247 -1 O SER A 246 N SER A 116 SHEET 1 AA4 5 VAL A 133 SER A 134 0 SHEET 2 AA4 5 GLY A 238 ILE A 241 1 O ILE A 241 N SER A 134 SHEET 3 AA4 5 LYS A 148 VAL A 152 1 N ALA A 150 O PHE A 240 SHEET 4 AA4 5 GLU A 171 ILE A 175 1 O ILE A 175 N VAL A 151 SHEET 5 AA4 5 ILE A 200 HIS A 203 1 O VAL A 201 N VAL A 172 SHEET 1 AA5 3 ARG A 206 GLY A 213 0 SHEET 2 AA5 3 VAL A 218 ASP A 225 -1 O GLY A 220 N LEU A 212 SHEET 3 AA5 3 THR A 231 LEU A 234 -1 O GLU A 232 N LEU A 223 SHEET 1 AA6 2 MET A 258 LYS A 259 0 SHEET 2 AA6 2 TYR A 262 ILE A 263 -1 O TYR A 262 N LYS A 259 SHEET 1 AA7 6 GLU B 79 PHE B 82 0 SHEET 2 AA7 6 VAL B 33 THR B 36 1 N LEU B 34 O ILE B 81 SHEET 3 AA7 6 LYS B 5 LEU B 12 1 N ILE B 11 O VAL B 33 SHEET 4 AA7 6 SER B 103 ILE B 111 1 O SER B 105 N LYS B 5 SHEET 5 AA7 6 PHE B 95 GLY B 99 -1 N LEU B 97 O TYR B 104 SHEET 6 AA7 6 ILE B 85 ASP B 89 -1 N GLU B 87 O LYS B 98 SHEET 1 AA8 5 GLU B 79 PHE B 82 0 SHEET 2 AA8 5 VAL B 33 THR B 36 1 N LEU B 34 O ILE B 81 SHEET 3 AA8 5 LYS B 5 LEU B 12 1 N ILE B 11 O VAL B 33 SHEET 4 AA8 5 SER B 103 ILE B 111 1 O SER B 105 N LYS B 5 SHEET 5 AA8 5 ILE B 281 ALA B 283 1 O PHE B 282 N ILE B 111 SHEET 1 AA9 2 ALA B 115 ALA B 117 0 SHEET 2 AA9 2 HIS B 245 PRO B 247 -1 O SER B 246 N SER B 116 SHEET 1 AB1 5 VAL B 133 SER B 134 0 SHEET 2 AB1 5 GLY B 238 ILE B 241 1 O ILE B 241 N SER B 134 SHEET 3 AB1 5 LYS B 148 VAL B 152 1 N ALA B 150 O PHE B 240 SHEET 4 AB1 5 GLU B 171 ILE B 175 1 O HIS B 173 N VAL B 151 SHEET 5 AB1 5 ILE B 200 HIS B 203 1 O VAL B 201 N VAL B 172 SHEET 1 AB2 3 ARG B 206 GLY B 213 0 SHEET 2 AB2 3 VAL B 218 ASP B 225 -1 O ARG B 222 N GLU B 210 SHEET 3 AB2 3 THR B 231 LEU B 234 -1 O GLU B 232 N LEU B 223 SHEET 1 AB3 2 MET B 258 LYS B 259 0 SHEET 2 AB3 2 TYR B 262 ILE B 263 -1 O TYR B 262 N LYS B 259 SSBOND 1 CYS A 136 CYS A 139 1555 1555 2.04 SSBOND 2 CYS B 136 CYS B 139 1555 1555 2.03 CISPEP 1 TRP A 53 PRO A 54 0 0.06 CISPEP 2 ARG A 93 PRO A 94 0 -0.45 SITE 1 AC1 10 GLY A 15 PRO A 16 ALA A 17 GLY A 114 SITE 2 AC1 10 GLY A 285 ASP A 286 SER A 298 HOH A 531 SITE 3 AC1 10 HOH A 541 HOH A 554 SITE 1 AC2 9 GLY B 15 PRO B 16 ALA B 17 GLY B 114 SITE 2 AC2 9 GLY B 285 ASP B 286 SER B 298 HOH B 504 SITE 3 AC2 9 HOH B 511 CRYST1 120.031 120.031 79.185 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008331 0.004810 0.000000 0.00000 SCALE2 0.000000 0.009620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012629 0.00000