HEADER HYDROLASE 16-FEB-17 5UU7 TITLE TETRAGONAL THERMOLYSIN (295 K) IN THE PRESENCE OF 50% MPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427; SOURCE 4 GENE: NPR; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS THERMOPROTEOLYTICUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1427 KEYWDS ZINC PROTEASE, ALPHA/BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.JUERS REVDAT 3 06-MAR-24 5UU7 1 LINK REVDAT 2 19-SEP-18 5UU7 1 JRNL REVDAT 1 08-MAR-17 5UU7 0 JRNL AUTH D.H.JUERS,C.A.FARLEY,C.P.SAXBY,R.A.COTTER,J.K.B.CAHN, JRNL AUTH 2 R.C.HOLTON-BURKE,K.HARRISON,Z.WU JRNL TITL THE IMPACT OF CRYOSOLUTION THERMAL CONTRACTION ON PROTEINS JRNL TITL 2 AND PROTEIN CRYSTALS: VOLUMES, CONFORMATION AND ORDER. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 922 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30198901 JRNL DOI 10.1107/S2059798318008793 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.334 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 130994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.041 REMARK 3 FREE R VALUE TEST SET COUNT : 3983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.7605 - 4.8387 0.95 4346 138 0.1482 0.1493 REMARK 3 2 4.8387 - 3.8486 0.99 4512 139 0.0929 0.1114 REMARK 3 3 3.8486 - 3.3645 1.00 4549 146 0.1019 0.1042 REMARK 3 4 3.3645 - 3.0579 1.00 4576 138 0.1101 0.1271 REMARK 3 5 3.0579 - 2.8393 1.00 4579 139 0.1099 0.1342 REMARK 3 6 2.8393 - 2.6723 1.00 4575 154 0.1046 0.1341 REMARK 3 7 2.6723 - 2.5387 1.00 4578 143 0.1174 0.1282 REMARK 3 8 2.5387 - 2.4284 1.00 4563 147 0.1190 0.1404 REMARK 3 9 2.4284 - 2.3350 1.00 4556 140 0.1185 0.1330 REMARK 3 10 2.3350 - 2.2545 1.00 4616 133 0.1213 0.1316 REMARK 3 11 2.2545 - 2.1841 1.00 4551 146 0.1282 0.1447 REMARK 3 12 2.1841 - 2.1217 1.00 4561 144 0.1331 0.1356 REMARK 3 13 2.1217 - 2.0659 1.00 4547 141 0.1427 0.1468 REMARK 3 14 2.0659 - 2.0156 1.00 4570 144 0.1607 0.1835 REMARK 3 15 2.0156 - 1.9698 1.00 4545 140 0.1622 0.1968 REMARK 3 16 1.9698 - 1.9279 1.00 4588 144 0.1695 0.2136 REMARK 3 17 1.9279 - 1.8894 1.00 4528 147 0.1807 0.1590 REMARK 3 18 1.8894 - 1.8537 1.00 4590 141 0.1985 0.1940 REMARK 3 19 1.8537 - 1.8207 0.99 4500 144 0.2090 0.2414 REMARK 3 20 1.8207 - 1.7898 0.99 4574 141 0.2324 0.2281 REMARK 3 21 1.7898 - 1.7610 0.99 4561 139 0.2446 0.2382 REMARK 3 22 1.7610 - 1.7339 0.99 4510 145 0.2600 0.2181 REMARK 3 23 1.7339 - 1.7084 0.99 4554 145 0.2757 0.2731 REMARK 3 24 1.7084 - 1.6843 0.99 4522 140 0.2867 0.3121 REMARK 3 25 1.6843 - 1.6616 0.99 4496 138 0.2969 0.2688 REMARK 3 26 1.6616 - 1.6400 0.99 4526 144 0.3126 0.3731 REMARK 3 27 1.6400 - 1.6195 0.98 4465 142 0.3157 0.3079 REMARK 3 28 1.6195 - 1.6000 0.96 4373 141 0.3355 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.162 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2620 REMARK 3 ANGLE : 0.914 3595 REMARK 3 CHIRALITY : 0.057 388 REMARK 3 PLANARITY : 0.006 469 REMARK 3 DIHEDRAL : 9.866 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131139 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 50 MG/ML IN 45% DMSO, 0.5 M REMARK 280 ZNCL2 WELL: ~2 M AMSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.76100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.01300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.01300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.88050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.01300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.01300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.64150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.01300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.01300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.88050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.01300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.01300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.64150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.76100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -322.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 239 ZN ZN A 408 1.25 REMARK 500 O HOH A 501 O HOH A 712 1.82 REMARK 500 OD2 ASP A 311 O HOH A 501 1.92 REMARK 500 O HOH A 515 O HOH A 744 1.99 REMARK 500 OH TYR A 157 O HOH A 502 2.04 REMARK 500 O HOH A 604 O HOH A 744 2.07 REMARK 500 O HOH A 503 O HOH A 724 2.08 REMARK 500 O HOH A 674 O HOH A 677 2.09 REMARK 500 O HOH A 749 O HOH A 753 2.14 REMARK 500 OD2 ASP A 150 O HOH A 503 2.16 REMARK 500 O HOH A 513 O HOH A 740 2.17 REMARK 500 O HOH A 604 O HOH A 666 2.18 REMARK 500 O HOH A 666 O HOH A 744 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 86.60 -155.26 REMARK 500 THR A 26 -58.63 71.94 REMARK 500 SER A 92 -171.72 60.24 REMARK 500 SER A 107 -158.06 59.11 REMARK 500 ASN A 111 55.43 -93.20 REMARK 500 THR A 152 -88.09 -123.98 REMARK 500 ILE A 156 173.93 -58.56 REMARK 500 ASN A 159 -147.87 58.65 REMARK 500 THR A 194 76.37 39.54 REMARK 500 ASP A 207 72.81 -150.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.9 REMARK 620 3 ASP A 59 OD1 120.8 69.4 REMARK 620 4 GLN A 61 O 97.5 91.2 89.8 REMARK 620 5 HOH A 522 O 158.5 146.5 77.4 93.6 REMARK 620 6 HOH A 563 O 80.3 131.3 158.8 85.9 82.2 REMARK 620 7 HOH A 718 O 84.3 91.5 91.0 177.3 84.0 92.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 80.9 REMARK 620 3 GLU A 177 OE2 128.4 48.4 REMARK 620 4 ASP A 185 OD1 159.6 118.9 70.6 REMARK 620 5 GLU A 187 O 85.0 149.4 142.9 79.6 REMARK 620 6 GLU A 190 OE1 82.8 127.8 118.3 80.7 76.6 REMARK 620 7 GLU A 190 OE2 98.9 82.0 69.5 80.3 127.2 52.2 REMARK 620 8 HOH A 584 O 101.8 79.7 80.2 87.6 76.8 152.4 149.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.7 REMARK 620 3 GLU A 166 OE1 101.0 105.4 REMARK 620 4 GLU A 166 OE2 123.0 102.7 22.8 REMARK 620 5 HOH A 620 O 111.1 116.2 116.7 99.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE1 REMARK 620 2 GLU A 143 OE2 54.1 REMARK 620 3 HOH A 535 O 105.7 95.8 REMARK 620 4 HOH A 620 O 130.1 97.1 118.2 REMARK 620 5 HOH A 633 O 73.4 127.4 101.8 116.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE2 REMARK 620 2 MRD A 416 O2 81.9 REMARK 620 3 HOH A 535 O 94.1 131.2 REMARK 620 4 HOH A 620 O 98.9 129.1 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 90.0 REMARK 620 3 ASP A 185 OD2 91.0 83.2 REMARK 620 4 GLU A 190 OE2 92.7 176.8 94.9 REMARK 620 5 HOH A 525 O 86.2 87.9 170.7 94.2 REMARK 620 6 HOH A 538 O 172.6 84.7 93.4 92.9 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 75.3 REMARK 620 3 THR A 194 OG1 76.1 70.0 REMARK 620 4 ILE A 197 O 154.4 81.5 105.9 REMARK 620 5 ASP A 200 OD1 122.6 134.8 74.9 81.6 REMARK 620 6 HOH A 559 O 85.7 151.7 125.8 111.4 73.2 REMARK 620 7 HOH A 686 O 84.7 79.8 147.4 80.9 137.5 77.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 410 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD1 REMARK 620 2 ASP A 213 OD2 58.7 REMARK 620 3 HOH A 515 O 138.0 84.1 REMARK 620 4 HOH A 604 O 86.4 112.6 91.3 REMARK 620 5 HOH A 614 O 102.6 86.8 93.4 160.4 REMARK 620 6 HOH A 666 O 92.5 150.3 125.4 68.6 93.3 REMARK 620 7 HOH A 744 O 146.4 138.9 56.9 61.0 106.3 69.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 226 OD1 REMARK 620 2 HIS A 231 ND1 115.0 REMARK 620 3 HOH A 721 O 114.2 107.7 REMARK 620 4 HOH A 736 O 118.3 110.3 88.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 239 NZ REMARK 620 2 HOH A 636 O 111.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 250 ND1 REMARK 620 2 HOH A 636 O 102.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UN3 RELATED DB: PDB REMARK 900 RELATED ID: 5UU8 RELATED DB: PDB REMARK 900 RELATED ID: 5UU9 RELATED DB: PDB REMARK 900 RELATED ID: 5UUA RELATED DB: PDB REMARK 900 RELATED ID: 5UUB RELATED DB: PDB REMARK 900 RELATED ID: 5UUC RELATED DB: PDB REMARK 900 RELATED ID: 5UUD RELATED DB: PDB REMARK 900 RELATED ID: 5UUE RELATED DB: PDB DBREF 5UU7 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 401 1 HET ZN A 402 1 HET CA A 403 1 HET CA A 404 1 HET ZN A 405 1 HET ZN A 406 2 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET ZN A 410 1 HET CL A 411 1 HET CL A 412 1 HET CL A 413 1 HET CL A 414 1 HET MRD A 415 22 HET MRD A 416 44 HET MPD A 417 22 HET DMS A 418 10 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 CA 3(CA 2+) FORMUL 3 ZN 7(ZN 2+) FORMUL 12 CL 4(CL 1-) FORMUL 16 MRD 2(C6 H14 O2) FORMUL 18 MPD C6 H14 O2 FORMUL 19 DMS C2 H6 O S FORMUL 20 HOH *253(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 ASN A 89 1 23 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 TYR A 151 1 16 HELIX 5 AA5 GLN A 158 ALA A 180 1 23 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 HIS A 216 ARG A 220 5 5 HELIX 8 AA8 THR A 224 VAL A 230 1 7 HELIX 9 AA9 ASN A 233 GLY A 247 1 15 HELIX 10 AB1 GLY A 259 TYR A 274 1 16 HELIX 11 AB2 ASN A 280 GLY A 297 1 18 HELIX 12 AB3 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 VAL A 104 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 TYR A 122 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.38 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.61 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.33 LINK O GLN A 61 CA CA A 403 1555 1555 2.24 LINK OD2 ASP A 138 CA CA A 401 1555 1555 2.36 LINK NE2 HIS A 142 ZN ZN A 405 1555 1555 2.03 LINK OE1 GLU A 143 ZN B ZN A 406 1555 1555 2.59 LINK OE2 GLU A 143 ZN B ZN A 406 1555 1555 2.07 LINK OE2 GLU A 143 ZN C ZN A 406 1555 1555 1.82 LINK NE2 HIS A 146 ZN ZN A 405 1555 1555 2.01 LINK OE1BGLU A 166 ZN ZN A 405 1555 1555 2.01 LINK OE2AGLU A 166 ZN ZN A 405 1555 1555 1.87 LINK OE1 GLU A 177 CA CA A 401 1555 1555 2.46 LINK OE2 GLU A 177 CA CA A 401 1555 1555 2.82 LINK OE2 GLU A 177 ZN ZN A 402 1555 1555 2.15 LINK O ASN A 183 ZN ZN A 402 1555 1555 2.34 LINK OD1 ASP A 185 CA CA A 401 1555 1555 2.47 LINK OD2 ASP A 185 ZN ZN A 402 1555 1555 2.03 LINK O GLU A 187 CA CA A 401 1555 1555 2.35 LINK OE1 GLU A 190 CA CA A 401 1555 1555 2.52 LINK OE2 GLU A 190 CA CA A 401 1555 1555 2.53 LINK OE2 GLU A 190 ZN ZN A 402 1555 1555 2.08 LINK O TYR A 193 CA CA A 404 1555 1555 2.34 LINK O THR A 194 CA CA A 404 1555 1555 2.41 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.35 LINK O ILE A 197 CA CA A 404 1555 1555 2.25 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.36 LINK OD1 ASP A 213 ZN ZN A 410 1555 1555 2.24 LINK OD2 ASP A 213 ZN ZN A 410 1555 1555 2.23 LINK OD1 ASP A 226 ZN ZN A 407 1555 1555 1.99 LINK ND1 HIS A 231 ZN ZN A 407 1555 1555 1.89 LINK NZ LYS A 239 ZN ZN A 408 1555 1555 2.09 LINK ND1 HIS A 250 ZN ZN A 409 1555 1555 2.05 LINK CA CA A 401 O HOH A 584 1555 1555 2.45 LINK ZN ZN A 402 O HOH A 525 1555 1555 2.12 LINK ZN ZN A 402 O HOH A 538 1555 1555 2.10 LINK CA CA A 403 O HOH A 522 1555 1555 2.41 LINK CA CA A 403 O HOH A 563 1555 1555 2.45 LINK CA CA A 403 O HOH A 718 1555 1555 2.35 LINK CA CA A 404 O HOH A 559 1555 1555 2.39 LINK CA CA A 404 O HOH A 686 1555 1555 2.38 LINK ZN ZN A 405 O HOH A 620 1555 1555 1.85 LINK ZN C ZN A 406 O2 CMRD A 416 1555 1555 2.18 LINK ZN B ZN A 406 O HOH A 535 1555 1555 1.96 LINK ZN C ZN A 406 O HOH A 535 1555 1555 2.25 LINK ZN B ZN A 406 O HOH A 620 1555 1555 1.97 LINK ZN C ZN A 406 O HOH A 620 1555 1555 2.17 LINK ZN B ZN A 406 O HOH A 633 1555 1555 2.17 LINK ZN ZN A 407 O HOH A 721 1555 1555 2.08 LINK ZN ZN A 407 O HOH A 736 1555 1555 2.48 LINK ZN ZN A 408 O HOH A 636 1555 1555 1.82 LINK ZN ZN A 409 O HOH A 636 1555 1555 2.15 LINK ZN ZN A 410 O HOH A 515 1555 1555 2.13 LINK ZN ZN A 410 O HOH A 604 1555 1555 2.04 LINK ZN ZN A 410 O HOH A 614 1555 1555 2.15 LINK ZN ZN A 410 O HOH A 666 1555 1555 1.80 LINK ZN ZN A 410 O HOH A 744 1555 1555 2.04 CISPEP 1 LEU A 50 PRO A 51 0 3.04 SITE 1 AC1 7 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 7 GLU A 190 ZN A 402 HOH A 584 SITE 1 AC2 7 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC2 7 CA A 401 HOH A 525 HOH A 538 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A 522 SITE 2 AC3 6 HOH A 563 HOH A 718 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A 559 HOH A 686 SITE 1 AC5 5 HIS A 142 HIS A 146 GLU A 166 ZN A 406 SITE 2 AC5 5 HOH A 620 SITE 1 AC6 6 GLU A 143 ZN A 405 MRD A 416 HOH A 535 SITE 2 AC6 6 HOH A 620 HOH A 633 SITE 1 AC7 4 ASP A 226 HIS A 231 HOH A 721 HOH A 736 SITE 1 AC8 5 LYS A 239 ZN A 409 CL A 411 CL A 412 SITE 2 AC8 5 HOH A 636 SITE 1 AC9 5 HIS A 250 ZN A 408 CL A 413 CL A 414 SITE 2 AC9 5 HOH A 636 SITE 1 AD1 6 ASP A 213 HOH A 515 HOH A 604 HOH A 614 SITE 2 AD1 6 HOH A 666 HOH A 744 SITE 1 AD2 4 LYS A 239 ZN A 408 CL A 412 HOH A 636 SITE 1 AD3 3 LYS A 239 ZN A 408 CL A 411 SITE 1 AD4 4 ARG A 47 ASP A 215 HIS A 250 ZN A 409 SITE 1 AD5 5 LYS A 45 ARG A 47 HIS A 250 TYR A 251 SITE 2 AD5 5 ZN A 409 SITE 1 AD6 3 TYR A 274 GLN A 283 ALA A 286 SITE 1 AD7 9 ASN A 112 ALA A 113 LEU A 133 HIS A 142 SITE 2 AD7 9 GLU A 143 LEU A 202 ARG A 203 ZN A 406 SITE 3 AD7 9 HOH A 625 SITE 1 AD8 7 SER A 25 TYR A 29 GLY A 212 ASP A 213 SITE 2 AD8 7 HOH A 548 HOH A 604 HOH A 666 SITE 1 AD9 2 HIS A 216 HOH A 747 CRYST1 98.026 98.026 107.522 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009300 0.00000