HEADER HYDROLASE 16-FEB-17 5UUD TITLE TETRAGONAL THERMOLYSIN CRYOCOOLED TO 100 K WITH 50% DMF AS TITLE 2 CRYOPROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427; SOURCE 4 GENE: NPR; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS THERMOPROTEOLYTICUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1427 KEYWDS ZINC PROTEASE, ALPHA/BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.JUERS REVDAT 3 06-MAR-24 5UUD 1 LINK REVDAT 2 19-SEP-18 5UUD 1 SOURCE JRNL REVDAT 1 08-MAR-17 5UUD 0 JRNL AUTH D.H.JUERS,C.A.FARLEY,C.P.SAXBY,R.A.COTTER,J.K.B.CAHN, JRNL AUTH 2 R.C.HOLTON-BURKE,K.HARRISON,Z.WU JRNL TITL THE IMPACT OF CRYOSOLUTION THERMAL CONTRACTION ON PROTEINS JRNL TITL 2 AND PROTEIN CRYSTALS: VOLUMES, CONFORMATION AND ORDER. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 922 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30198901 JRNL DOI 10.1107/S2059798318008793 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 125401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.014 REMARK 3 FREE R VALUE TEST SET COUNT : 3780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8886 - 4.7785 0.99 4463 141 0.1439 0.1518 REMARK 3 2 4.7785 - 3.8015 1.00 4518 138 0.1292 0.1582 REMARK 3 3 3.8015 - 3.3235 1.00 4500 141 0.1486 0.1728 REMARK 3 4 3.3235 - 3.0208 1.00 4512 135 0.1609 0.2218 REMARK 3 5 3.0208 - 2.8049 1.00 4516 141 0.1465 0.1876 REMARK 3 6 2.8049 - 2.6399 1.00 4515 141 0.1391 0.1374 REMARK 3 7 2.6399 - 2.5080 1.00 4484 143 0.1362 0.1581 REMARK 3 8 2.5080 - 2.3990 1.00 4490 142 0.1408 0.1498 REMARK 3 9 2.3990 - 2.3068 1.00 4509 134 0.1396 0.1623 REMARK 3 10 2.3068 - 2.2273 1.00 4536 141 0.1490 0.1732 REMARK 3 11 2.2273 - 2.1578 1.00 4487 137 0.1540 0.1833 REMARK 3 12 2.1578 - 2.0961 1.00 4483 142 0.1664 0.2548 REMARK 3 13 2.0961 - 2.0410 1.00 4530 139 0.1822 0.2172 REMARK 3 14 2.0410 - 1.9913 1.00 4527 147 0.1917 0.2324 REMARK 3 15 1.9913 - 1.9460 1.00 4493 132 0.1977 0.2287 REMARK 3 16 1.9460 - 1.9047 1.00 4484 140 0.1979 0.2413 REMARK 3 17 1.9047 - 1.8666 1.00 4534 153 0.2031 0.2105 REMARK 3 18 1.8666 - 1.8314 1.00 4473 136 0.2154 0.2497 REMARK 3 19 1.8314 - 1.7987 1.00 4511 143 0.2206 0.2278 REMARK 3 20 1.7987 - 1.7682 1.00 4526 136 0.2361 0.2744 REMARK 3 21 1.7682 - 1.7397 1.00 4490 137 0.2470 0.2016 REMARK 3 22 1.7397 - 1.7130 1.00 4512 148 0.2498 0.3060 REMARK 3 23 1.7130 - 1.6878 1.00 4482 134 0.2488 0.2359 REMARK 3 24 1.6878 - 1.6640 1.00 4498 139 0.2648 0.3003 REMARK 3 25 1.6640 - 1.6416 1.00 4502 152 0.2847 0.3294 REMARK 3 26 1.6416 - 1.6202 1.00 4504 126 0.2967 0.3027 REMARK 3 27 1.6202 - 1.6000 1.00 4542 142 0.3080 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2667 REMARK 3 ANGLE : 0.789 3650 REMARK 3 CHIRALITY : 0.051 389 REMARK 3 PLANARITY : 0.005 491 REMARK 3 DIHEDRAL : 9.834 1562 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL: ~2 M AMSO4 DROP: 50 MG/ML REMARK 280 PROTEIN IN 45% DMSO, 0.5 M ZNCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.76450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.22000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.38225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.22000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.14675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.22000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.22000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.38225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.22000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.14675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.76450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 239 ZN ZN A 408 1.33 REMARK 500 HZ2 LYS A 85 O HOH A 507 1.60 REMARK 500 O HOH A 765 O HOH A 786 1.88 REMARK 500 ND1 HIS A 231 O HOH A 501 1.91 REMARK 500 O HOH A 833 O HOH A 841 1.93 REMARK 500 O HOH A 859 O HOH A 877 1.94 REMARK 500 O HOH A 804 O HOH A 855 1.98 REMARK 500 O HOH A 822 O HOH A 852 1.98 REMARK 500 O HOH A 794 O HOH A 828 2.04 REMARK 500 O HOH A 648 O HOH A 792 2.05 REMARK 500 O HOH A 610 O HOH A 818 2.05 REMARK 500 OD2 ASP A 261 O HOH A 502 2.06 REMARK 500 O HOH A 829 O HOH A 835 2.07 REMARK 500 OD1 ASP A 226 O HOH A 501 2.07 REMARK 500 OD1 ASP A 261 O HOH A 503 2.09 REMARK 500 O HOH A 691 O HOH A 879 2.10 REMARK 500 O HOH A 769 O HOH A 836 2.13 REMARK 500 O HOH A 562 O HOH A 856 2.14 REMARK 500 O HOH A 776 O HOH A 854 2.14 REMARK 500 OD1 ASN A 181 O HOH A 504 2.14 REMARK 500 O HOH A 509 O HOH A 805 2.16 REMARK 500 O HOH A 728 O HOH A 856 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH A 810 4464 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 88.73 -153.43 REMARK 500 THR A 26 -57.14 70.43 REMARK 500 SER A 92 -174.68 60.98 REMARK 500 SER A 107 -162.66 58.49 REMARK 500 ASN A 111 57.61 -90.29 REMARK 500 THR A 152 -97.09 -129.31 REMARK 500 ILE A 156 -172.04 -63.93 REMARK 500 TYR A 157 54.56 -92.62 REMARK 500 ASN A 159 -145.34 55.84 REMARK 500 ASN A 183 58.98 -146.53 REMARK 500 ASN A 183 63.59 38.32 REMARK 500 THR A 194 78.70 43.67 REMARK 500 ASP A 207 73.72 -150.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.3 REMARK 620 3 ASP A 59 OD1 119.1 68.0 REMARK 620 4 GLN A 61 O 91.0 84.2 87.8 REMARK 620 5 HOH A 541 O 160.8 145.6 77.8 99.1 REMARK 620 6 HOH A 622 O 81.6 131.7 158.7 86.6 82.8 REMARK 620 7 HOH A 790 O 85.4 91.3 91.5 175.4 85.2 95.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 78.7 REMARK 620 3 GLU A 177 OE2 127.8 50.1 REMARK 620 4 ASP A 185 OD1 156.7 123.3 73.2 REMARK 620 5 GLU A 187 O 86.2 147.9 142.0 77.9 REMARK 620 6 GLU A 190 OE1 81.8 127.4 119.3 78.1 77.2 REMARK 620 7 GLU A 190 OE2 97.1 82.5 70.6 79.8 127.8 52.2 REMARK 620 8 HOH A 626 O 102.8 80.8 80.5 89.6 75.1 151.4 150.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.0 REMARK 620 3 GLU A 166 OE2 117.5 97.6 REMARK 620 4 HOH A 746 O 117.2 118.1 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE2 REMARK 620 2 HOH A 654 O 119.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 92.6 REMARK 620 3 ASN A 183 O 93.8 8.7 REMARK 620 4 ASP A 185 OD2 89.3 90.7 82.1 REMARK 620 5 GLU A 190 OE2 90.7 174.4 173.9 93.9 REMARK 620 6 HOH A 523 O 86.8 83.1 91.8 172.6 92.5 REMARK 620 7 HOH A 527 O 174.7 82.7 81.9 93.1 93.8 90.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.8 REMARK 620 3 THR A 194 OG1 74.5 72.0 REMARK 620 4 ILE A 197 O 158.2 81.9 103.1 REMARK 620 5 ASP A 200 OD1 120.0 133.1 71.9 78.3 REMARK 620 6 HOH A 615 O 84.2 152.4 122.1 114.0 74.0 REMARK 620 7 HOH A 785 O 87.7 81.0 150.3 84.6 137.7 78.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 HOH A 520 O 88.5 REMARK 620 3 HOH A 815 O 115.7 82.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 239 NZ REMARK 620 2 HOH A 774 O 104.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 250 ND1 REMARK 620 2 HOH A 774 O 97.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMF A 423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UN3 RELATED DB: PDB REMARK 900 RELATED ID: 5UU7 RELATED DB: PDB REMARK 900 RELATED ID: 5UU8 RELATED DB: PDB REMARK 900 RELATED ID: 5UU9 RELATED DB: PDB REMARK 900 RELATED ID: 5UUA RELATED DB: PDB REMARK 900 RELATED ID: 5UUB RELATED DB: PDB REMARK 900 RELATED ID: 5UUC RELATED DB: PDB REMARK 900 RELATED ID: 5UUE RELATED DB: PDB DBREF 5UUD A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 401 1 HET ZN A 402 1 HET CA A 403 1 HET CA A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET CL A 410 1 HET CL A 411 1 HET CL A 412 1 HET CL A 413 1 HET DMF A 414 12 HET DMF A 415 12 HET DMF A 416 12 HET DMF A 417 12 HET DMF A 418 12 HET DMF A 419 12 HET DMF A 420 12 HET DMF A 421 12 HET DMF A 422 12 HET DMF A 423 12 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM DMF DIMETHYLFORMAMIDE FORMUL 2 CA 3(CA 2+) FORMUL 3 ZN 6(ZN 2+) FORMUL 11 CL 4(CL 1-) FORMUL 15 DMF 10(C3 H7 N O) FORMUL 25 HOH *406(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 ASN A 89 1 23 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 TYR A 151 1 16 HELIX 5 AA5 GLN A 158 ASN A 181 1 24 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 HIS A 216 ARG A 220 5 5 HELIX 8 AA8 THR A 224 VAL A 230 1 7 HELIX 9 AA9 ASN A 233 GLY A 247 1 15 HELIX 10 AB1 GLY A 259 TYR A 274 1 16 HELIX 11 AB2 ASN A 280 GLY A 297 1 18 HELIX 12 AB3 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 TYR A 106 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.31 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.69 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.39 LINK O GLN A 61 CA CA A 403 1555 1555 2.23 LINK OD2 ASP A 138 CA CA A 401 1555 1555 2.39 LINK NE2 HIS A 142 ZN ZN A 405 1555 1555 2.03 LINK OE2 GLU A 143 ZN B ZN A 407 1555 1555 1.77 LINK NE2 HIS A 146 ZN ZN A 405 1555 1555 2.01 LINK OE2 GLU A 166 ZN ZN A 405 1555 1555 1.96 LINK OE1 GLU A 177 CA CA A 401 1555 1555 2.48 LINK OE2 GLU A 177 CA CA A 401 1555 1555 2.72 LINK OE2 GLU A 177 ZN ZN A 402 1555 1555 2.13 LINK O AASN A 183 ZN ZN A 402 1555 1555 2.35 LINK O BASN A 183 ZN ZN A 402 1555 1555 2.39 LINK OD1 ASP A 185 CA CA A 401 1555 1555 2.49 LINK OD2 ASP A 185 ZN ZN A 402 1555 1555 1.98 LINK O GLU A 187 CA CA A 401 1555 1555 2.35 LINK OE1 GLU A 190 CA CA A 401 1555 1555 2.54 LINK OE2 GLU A 190 CA CA A 401 1555 1555 2.47 LINK OE2 GLU A 190 ZN ZN A 402 1555 1555 2.09 LINK O TYR A 193 CA CA A 404 1555 1555 2.33 LINK O THR A 194 CA CA A 404 1555 1555 2.34 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.29 LINK O ILE A 197 CA CA A 404 1555 1555 2.25 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.36 LINK NE2 HIS A 231 ZN C ZN A 406 1555 1555 1.94 LINK NZ LYS A 239 ZN ZN A 408 1555 1555 2.16 LINK ND1 HIS A 250 ZN ZN A 409 1555 1555 2.03 LINK CA CA A 401 O HOH A 626 1555 1555 2.42 LINK ZN ZN A 402 O HOH A 523 1555 1555 2.08 LINK ZN ZN A 402 O HOH A 527 1555 4464 2.07 LINK CA CA A 403 O HOH A 541 1555 1555 2.40 LINK CA CA A 403 O HOH A 622 1555 1555 2.40 LINK CA CA A 403 O HOH A 790 1555 1555 2.26 LINK CA CA A 404 O HOH A 615 1555 1555 2.31 LINK CA CA A 404 O HOH A 785 1555 1555 2.42 LINK ZN ZN A 405 O AHOH A 746 1555 1555 1.87 LINK ZN C ZN A 406 O HOH A 520 1555 1555 2.18 LINK ZN C ZN A 406 O CHOH A 815 1555 1555 2.05 LINK ZN B ZN A 407 O BHOH A 654 1555 1555 1.92 LINK ZN ZN A 408 O HOH A 774 1555 1555 1.84 LINK ZN ZN A 409 O HOH A 774 1555 1555 2.03 CISPEP 1 LEU A 50 PRO A 51 0 2.54 SITE 1 AC1 7 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 7 GLU A 190 ZN A 402 HOH A 626 SITE 1 AC2 8 GLU A 177 LYS A 182 ASN A 183 ASP A 185 SITE 2 AC2 8 GLU A 190 CA A 401 HOH A 523 HOH A 527 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A 541 SITE 2 AC3 6 HOH A 622 HOH A 790 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A 615 HOH A 785 SITE 1 AC5 7 HIS A 142 GLU A 143 HIS A 146 GLU A 166 SITE 2 AC5 7 ZN A 406 ZN A 407 HOH A 746 SITE 1 AC6 8 GLU A 166 HIS A 231 ZN A 405 ZN A 407 SITE 2 AC6 8 HOH A 520 HOH A 746 HOH A 799 HOH A 815 SITE 1 AC7 8 GLU A 143 ZN A 405 ZN A 406 DMF A 418 SITE 2 AC7 8 HOH A 573 HOH A 654 HOH A 746 HOH A 799 SITE 1 AC8 5 LYS A 239 ZN A 409 CL A 410 CL A 411 SITE 2 AC8 5 HOH A 774 SITE 1 AC9 5 HIS A 250 ZN A 408 CL A 412 CL A 413 SITE 2 AC9 5 HOH A 774 SITE 1 AD1 2 GLY A 247 ZN A 408 SITE 1 AD2 4 SER A 206 LYS A 239 ZN A 408 CL A 412 SITE 1 AD3 4 ASP A 215 HIS A 250 ZN A 409 CL A 411 SITE 1 AD4 5 LYS A 45 ARG A 47 HIS A 250 TYR A 251 SITE 2 AD4 5 ZN A 409 SITE 1 AD5 5 TYR A 274 ALA A 286 ALA A 287 HOH A 525 SITE 2 AD5 5 HOH A 605 SITE 1 AD6 7 ASP A 150 TYR A 151 TRP A 186 SER A 206 SITE 2 AD6 7 TYR A 242 HOH A 576 HOH A 659 SITE 1 AD7 6 TYR A 66 HIS A 216 SER A 218 TYR A 251 SITE 2 AD7 6 HOH A 591 HOH A 690 SITE 1 AD8 6 TYR A 27 TYR A 29 ALA A 56 GLY A 212 SITE 2 AD8 6 PRO A 214 HOH A 603 SITE 1 AD9 7 ALA A 113 HIS A 142 GLU A 143 LEU A 202 SITE 2 AD9 7 ARG A 203 ZN A 407 HOH A 520 SITE 1 AE1 5 ASN A 21 ARG A 35 TYR A 75 HOH A 691 SITE 2 AE1 5 HOH A 719 SITE 1 AE2 3 THR A 299 GLN A 301 HOH A 517 SITE 1 AE3 6 ASP A 16 GLN A 17 LYS A 18 TYR A 75 SITE 2 AE3 6 TYR A 76 LYS A 182 SITE 1 AE4 2 PHE A 114 HOH A 867 SITE 1 AE5 5 ILE A 1 TYR A 29 LEU A 54 LYS A 210 SITE 2 AE5 5 GLY A 212 CRYST1 96.440 96.440 105.529 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009476 0.00000