HEADER TRANSFERASE 17-FEB-17 5UV4 TITLE CRYSTAL STRUCTURE OF MAIZE SIRK1 (SUCROSE-INDUCED RECEPTOR KINASE 1) TITLE 2 KINASE DOMAIN BOUND TO AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 737-1045; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: ZEAMMB73_708518; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 R3 KEYWDS RECEPTOR-LIKE KINASE, LEUCINE-RICH REPEAT, SUCROSE-INDUCED KINASE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.COUNAGO,B.AQUINO,K.B.MASSIRER,O.GILEADI,P.ARRUDA,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 4 04-OCT-23 5UV4 1 REMARK REVDAT 3 01-JAN-20 5UV4 1 REMARK REVDAT 2 17-APR-19 5UV4 1 REMARK REVDAT 1 26-APR-17 5UV4 0 JRNL AUTH B.AQUINO,R.M.COUNAGO,K.B.MASSIRER,O.GILEADI,P.ARRUDA, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF MAIZE SIRK1 (SUCROSE-INDUCED RECEPTOR JRNL TITL 2 KINASE 1) KINASE DOMAIN BOUND TO AMP-PNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 14160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 652 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2885 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2056 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2755 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2411 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 24.09650 REMARK 3 B22 (A**2) : -12.70820 REMARK 3 B33 (A**2) : -11.38830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.296 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.284 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.196 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2258 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3076 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 753 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 40 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 336 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2258 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 303 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2577 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|744 - 791} REMARK 3 ORIGIN FOR THE GROUP (A): 16.9251 27.1041 44.9567 REMARK 3 T TENSOR REMARK 3 T11: -0.2331 T22: -0.2656 REMARK 3 T33: -0.0254 T12: 0.0657 REMARK 3 T13: -0.0452 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 4.3148 L22: 6.0770 REMARK 3 L33: 6.3413 L12: -0.3412 REMARK 3 L13: -1.9987 L23: 3.1408 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.1548 S13: -0.7099 REMARK 3 S21: 0.1439 S22: 0.0213 S23: -0.4948 REMARK 3 S31: 0.7060 S32: 0.1824 S33: -0.1407 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|792 - 810} REMARK 3 ORIGIN FOR THE GROUP (A): 0.7589 31.5774 43.4059 REMARK 3 T TENSOR REMARK 3 T11: -0.2400 T22: -0.0427 REMARK 3 T33: 0.0386 T12: -0.0860 REMARK 3 T13: -0.0210 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 1.2921 L22: 4.9123 REMARK 3 L33: 0.0355 L12: 2.9932 REMARK 3 L13: -1.7225 L23: -0.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.0759 S13: -0.4016 REMARK 3 S21: 0.0056 S22: -0.2471 S23: 0.5493 REMARK 3 S31: 0.2011 S32: -0.1801 S33: 0.2108 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|811 - 860} REMARK 3 ORIGIN FOR THE GROUP (A): 17.9826 37.5845 47.3062 REMARK 3 T TENSOR REMARK 3 T11: -0.2461 T22: -0.1582 REMARK 3 T33: -0.1284 T12: 0.0433 REMARK 3 T13: -0.0135 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.4910 L22: 3.0735 REMARK 3 L33: 1.4471 L12: 0.2424 REMARK 3 L13: 0.1555 L23: 0.2997 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: -0.0281 S13: -0.4598 REMARK 3 S21: 0.2276 S22: -0.0728 S23: -0.2547 REMARK 3 S31: 0.3442 S32: 0.1477 S33: -0.0592 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|861 - 962} REMARK 3 ORIGIN FOR THE GROUP (A): 9.8746 48.2166 47.6202 REMARK 3 T TENSOR REMARK 3 T11: -0.2968 T22: -0.1078 REMARK 3 T33: -0.1727 T12: -0.0074 REMARK 3 T13: 0.0492 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 2.4636 L22: 2.7957 REMARK 3 L33: 1.4021 L12: 0.6044 REMARK 3 L13: -0.2721 L23: -0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.1864 S12: -0.2214 S13: 0.0681 REMARK 3 S21: 0.2181 S22: -0.2020 S23: 0.2208 REMARK 3 S31: 0.0202 S32: -0.0522 S33: 0.0156 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|963 - 1023} REMARK 3 ORIGIN FOR THE GROUP (A): 16.4457 63.0974 57.7091 REMARK 3 T TENSOR REMARK 3 T11: -0.0898 T22: -0.1023 REMARK 3 T33: -0.1365 T12: -0.0666 REMARK 3 T13: 0.0971 T23: -0.2052 REMARK 3 L TENSOR REMARK 3 L11: 4.5891 L22: 4.7121 REMARK 3 L33: 4.7757 L12: 0.8324 REMARK 3 L13: 2.3435 L23: -0.9762 REMARK 3 S TENSOR REMARK 3 S11: 0.1351 S12: -0.6391 S13: 0.4499 REMARK 3 S21: 0.9111 S22: -0.1655 S23: 0.1635 REMARK 3 S31: -0.4522 S32: -0.2268 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|1024 - 1045} REMARK 3 ORIGIN FOR THE GROUP (A): 9.9324 61.3587 42.3465 REMARK 3 T TENSOR REMARK 3 T11: -0.2449 T22: -0.1102 REMARK 3 T33: -0.0040 T12: 0.0352 REMARK 3 T13: 0.0135 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 4.8735 L22: 2.8661 REMARK 3 L33: 0.0230 L12: -0.0519 REMARK 3 L13: -0.5134 L23: 1.6991 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0676 S13: 0.4852 REMARK 3 S21: -0.0343 S22: -0.2120 S23: 0.4802 REMARK 3 S31: -0.0551 S32: -0.1317 S33: 0.2342 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979200 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAY 1, 2016 BUILT=20160617 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4L68 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG1000, 12.5% W/V PEG3350, REMARK 280 12.5% V/V MPD, 0,02M OF EACH MONOSSACHARIDE (D-GLUCOSE, D- REMARK 280 MANNOSE, D-GALACTOSE, L-FUCOSE, D-XYLOSE, N-ACETYL-D-GLUCOSAMINE) REMARK 280 , 0.1M MOPS/HEPES-NA PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.72200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.87100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.26600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.87100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.72200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.26600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 735 REMARK 465 MET A 736 REMARK 465 SER A 737 REMARK 465 PRO A 738 REMARK 465 ASP A 739 REMARK 465 LYS A 740 REMARK 465 LEU A 741 REMARK 465 VAL A 742 REMARK 465 GLY A 743 REMARK 465 ASN A 973 REMARK 465 ASP A 974 REMARK 465 GLY A 975 REMARK 465 VAL A 976 REMARK 465 THR A 1001 REMARK 465 GLY A 1002 REMARK 465 VAL A 1003 REMARK 465 GLU A 1004 REMARK 465 SER A 1005 REMARK 465 SER A 1006 REMARK 465 GLU A 1007 REMARK 465 GLY A 1008 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 749 CG OD1 OD2 REMARK 470 ASN A 750 CG OD1 ND2 REMARK 470 THR A 755 OG1 CG2 REMARK 470 GLU A 757 CG CD OE1 OE2 REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 CYS A 761 SG REMARK 470 ASP A 781 CG OD1 OD2 REMARK 470 LYS A 800 CG CD CE NZ REMARK 470 LYS A 807 CG CD CE NZ REMARK 470 LYS A 828 CG CD CE NZ REMARK 470 GLU A 829 CG CD OE1 OE2 REMARK 470 ASP A 852 CG OD1 OD2 REMARK 470 GLU A 853 CG CD OE1 OE2 REMARK 470 ASN A 855 CG OD1 ND2 REMARK 470 ASN A 898 CG OD1 ND2 REMARK 470 SER A 899 OG REMARK 470 SER A 902 OG REMARK 470 ILE A 917 CG1 CG2 CD1 REMARK 470 VAL A 923 CG1 CG2 REMARK 470 SER A 938 OG REMARK 470 THR A 939 OG1 CG2 REMARK 470 SER A 940 OG REMARK 470 LYS A 941 CG CD CE NZ REMARK 470 ILE A 965 CG1 CG2 CD1 REMARK 470 ILE A 969 CG1 CG2 CD1 REMARK 470 ILE A 970 CG1 CG2 CD1 REMARK 470 VAL A 977 CG1 CG2 REMARK 470 MET A 985 CG SD CE REMARK 470 LEU A 988 CG CD1 CD2 REMARK 470 GLU A 989 CG CD OE1 OE2 REMARK 470 VAL A 992 CG1 CG2 REMARK 470 SER A 993 OG REMARK 470 ARG A 998 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 856 135.03 -36.79 REMARK 500 CYS A 971 96.89 -69.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1265 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 893 OD1 REMARK 620 2 ASP A 907 OD2 89.3 REMARK 620 3 ANP A1101 O1G 86.7 88.7 REMARK 620 4 ANP A1101 O1B 79.5 167.4 85.1 REMARK 620 5 ANP A1101 O1A 167.7 102.0 88.6 88.8 REMARK 620 6 HOH A1212 O 90.2 93.8 175.9 91.8 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1102 DBREF 5UV4 A 737 1045 UNP K7VIQ3 K7VIQ3_MAIZE 737 1045 SEQADV 5UV4 SER A 735 UNP K7VIQ3 EXPRESSION TAG SEQADV 5UV4 MET A 736 UNP K7VIQ3 EXPRESSION TAG SEQRES 1 A 311 SER MET SER PRO ASP LYS LEU VAL GLY ASP LEU HIS LEU SEQRES 2 A 311 PHE ASP ASN SER VAL VAL PHE THR ALA GLU GLU LEU SER SEQRES 3 A 311 CYS ALA PRO ALA GLU ILE ILE GLY ARG SER CYS HIS GLY SEQRES 4 A 311 THR SER TYR LYS ALA THR LEU ASP ASN GLY TYR MET LEU SEQRES 5 A 311 THR VAL LYS TRP LEU LYS GLU GLY PHE ALA LYS SER LYS SEQRES 6 A 311 LYS GLU PHE SER ARG GLU ILE LYS LYS LEU GLY SER VAL SEQRES 7 A 311 ARG HIS PRO ASN LEU VAL PRO LEU ARG GLY TYR TYR TRP SEQRES 8 A 311 GLY PRO LYS GLU HIS GLU ARG ILE MET ILE SER ASP TYR SEQRES 9 A 311 ALA ASP ALA THR SER LEU SER THR TYR LEU SER GLU PHE SEQRES 10 A 311 ASP GLU ARG ASN LEU PRO PRO LEU SER ALA GLY GLN ARG SEQRES 11 A 311 LEU ASN ILE ALA ILE ASP ILE ALA ARG CYS LEU ASP TYR SEQRES 12 A 311 LEU HIS ASN GLU ARG VAL ILE PRO HIS GLY ASN ILE LYS SEQRES 13 A 311 SER SER ASN VAL LEU ILE GLN ASN SER THR PRO SER ALA SEQRES 14 A 311 LEU VAL THR ASP TYR SER LEU HIS ARG LEU MET THR PRO SEQRES 15 A 311 ILE GLY MET ALA GLU GLN VAL LEU ASN ALA GLY ALA LEU SEQRES 16 A 311 GLY TYR SER PRO PRO GLU PHE SER SER THR SER LYS PRO SEQRES 17 A 311 CYS PRO SER LEU LYS SER ASP VAL TYR ALA PHE GLY VAL SEQRES 18 A 311 ILE LEU LEU GLU LEU LEU THR GLY LYS ILE ALA GLY GLU SEQRES 19 A 311 ILE ILE CYS MET ASN ASP GLY VAL VAL ASP LEU THR ASP SEQRES 20 A 311 TRP VAL ARG MET LEU ASP LEU GLU GLU ARG VAL SER GLU SEQRES 21 A 311 CYS TYR ASP ARG HIS ILE THR GLY VAL GLU SER SER GLU SEQRES 22 A 311 GLY ALA PRO GLN ALA LEU ASP GLY MET LEU ARG ILE ALA SEQRES 23 A 311 LEU ARG CYS ILE ARG SER ALA SER GLU ARG PRO GLU VAL SEQRES 24 A 311 ARG THR VAL PHE GLU ASP LEU LEU SER LEU SER SER HET ANP A1101 31 HET MG A1102 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *65(H2 O) HELIX 1 AA1 THR A 755 CYS A 761 1 7 HELIX 2 AA2 SER A 798 SER A 811 1 14 HELIX 3 AA3 LEU A 844 PHE A 851 1 8 HELIX 4 AA4 SER A 860 GLU A 881 1 22 HELIX 5 AA5 LYS A 890 SER A 892 5 3 HELIX 6 AA6 SER A 909 MET A 914 5 6 HELIX 7 AA7 THR A 915 LEU A 929 1 15 HELIX 8 AA8 PRO A 933 SER A 937 5 5 HELIX 9 AA9 SER A 945 GLY A 963 1 19 HELIX 10 AB1 ASP A 978 GLU A 989 1 12 HELIX 11 AB2 ARG A 991 TYR A 996 5 6 HELIX 12 AB3 PRO A 1010 ILE A 1024 1 15 HELIX 13 AB4 GLU A 1032 LEU A 1043 1 12 SHEET 1 AA1 6 LEU A 745 LEU A 747 0 SHEET 2 AA1 6 LEU A 820 TRP A 825 -1 O TYR A 823 N HIS A 746 SHEET 3 AA1 6 ARG A 832 ASP A 837 -1 O ILE A 835 N ARG A 821 SHEET 4 AA1 6 MET A 785 LEU A 791 -1 N LEU A 791 O ARG A 832 SHEET 5 AA1 6 GLY A 773 THR A 779 -1 N ALA A 778 O LEU A 786 SHEET 6 AA1 6 ALA A 764 ARG A 769 -1 N ILE A 767 O SER A 775 SHEET 1 AA2 3 THR A 842 SER A 843 0 SHEET 2 AA2 3 VAL A 894 ILE A 896 -1 O ILE A 896 N THR A 842 SHEET 3 AA2 3 ALA A 903 VAL A 905 -1 O LEU A 904 N LEU A 895 LINK OD1 ASN A 893 MG MG A1102 1555 1555 2.14 LINK OD2 ASP A 907 MG MG A1102 1555 1555 1.99 LINK O1G ANP A1101 MG MG A1102 1555 1555 2.20 LINK O1B ANP A1101 MG MG A1102 1555 1555 2.33 LINK O1A ANP A1101 MG MG A1102 1555 1555 1.75 LINK MG MG A1102 O HOH A1212 1555 1555 2.18 CISPEP 1 THR A 900 PRO A 901 0 6.44 SITE 1 AC1 23 ILE A 767 GLY A 768 SER A 770 HIS A 772 SITE 2 AC1 23 SER A 775 LYS A 789 TYR A 838 ALA A 839 SITE 3 AC1 23 ALA A 841 SER A 843 ASN A 888 LYS A 890 SITE 4 AC1 23 SER A 892 ASN A 893 LEU A 895 ASP A 907 SITE 5 AC1 23 MG A1102 HOH A1201 HOH A1208 HOH A1210 SITE 6 AC1 23 HOH A1212 HOH A1227 HOH A1235 SITE 1 AC2 4 ASN A 893 ASP A 907 ANP A1101 HOH A1212 CRYST1 53.444 74.532 79.742 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012540 0.00000