HEADER TRANSFERASE 22-FEB-17 5UXA TITLE CRYSTAL STRUCTURE OF MACROLIDE 2'-PHOSPHOTRANSFERASE MPHB FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROLIDE 2'-PHOSPHOTRANSFERASE II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MACROLIDE 2'-PHOSPHOTRANSFERASE II PROTEIN MPHB,MACROLIDE 2- COMPND 5 PHOSPHOTRANSFERASE,MPH(B); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MPHB, PO103_99; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS ANTIBIOTIC RESISTANCE, MACROLIDE, PHOSPHOTRANSFERASE, KINASE, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS KEYWDS 4 DISEASES, NIAID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,O.EGOROVA,R.DI LEO,V.YIM,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 6 06-MAR-24 5UXA 1 LINK REVDAT 5 11-DEC-19 5UXA 1 REMARK REVDAT 4 21-FEB-18 5UXA 1 JRNL REMARK SEQRES REVDAT 3 31-JAN-18 5UXA 1 REMARK REVDAT 2 13-SEP-17 5UXA 1 REMARK REVDAT 1 28-JUN-17 5UXA 0 JRNL AUTH A.C.PAWLOWSKI,P.J.STOGIOS,K.KOTEVA,T.SKARINA,E.EVDOKIMOVA, JRNL AUTH 2 A.SAVCHENKO,G.D.WRIGHT JRNL TITL THE EVOLUTION OF SUBSTRATE DISCRIMINATION IN MACROLIDE JRNL TITL 2 ANTIBIOTIC RESISTANCE ENZYMES. JRNL REF NAT COMMUN V. 9 112 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29317655 JRNL DOI 10.1038/S41467-017-02680-0 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2481 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 26109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1743 - 4.6748 1.00 1904 160 0.1631 0.2110 REMARK 3 2 4.6748 - 3.7129 1.00 1818 144 0.1253 0.1441 REMARK 3 3 3.7129 - 3.2443 1.00 1829 146 0.1286 0.1725 REMARK 3 4 3.2443 - 2.9480 0.99 1806 138 0.1496 0.2081 REMARK 3 5 2.9480 - 2.7368 0.99 1778 146 0.1626 0.2441 REMARK 3 6 2.7368 - 2.5756 0.98 1763 137 0.1593 0.2091 REMARK 3 7 2.5756 - 2.4467 0.98 1747 143 0.1567 0.2089 REMARK 3 8 2.4467 - 2.3402 0.97 1731 136 0.1612 0.2455 REMARK 3 9 2.3402 - 2.2501 0.96 1709 141 0.1498 0.2319 REMARK 3 10 2.2501 - 2.1725 0.95 1711 130 0.1592 0.1902 REMARK 3 11 2.1725 - 2.1046 0.94 1673 125 0.1709 0.2343 REMARK 3 12 2.1046 - 2.0445 0.92 1621 129 0.1703 0.2543 REMARK 3 13 2.0445 - 1.9907 0.90 1630 127 0.1889 0.2158 REMARK 3 14 1.9907 - 1.9421 0.83 1473 114 0.1891 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2501 REMARK 3 ANGLE : 1.156 3396 REMARK 3 CHIRALITY : 0.083 367 REMARK 3 PLANARITY : 0.008 439 REMARK 3 DIHEDRAL : 18.480 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:15) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4887 64.7567 33.1404 REMARK 3 T TENSOR REMARK 3 T11: 1.2764 T22: 0.4804 REMARK 3 T33: 1.2026 T12: -0.2468 REMARK 3 T13: -0.3061 T23: 0.2148 REMARK 3 L TENSOR REMARK 3 L11: 5.0127 L22: 4.7008 REMARK 3 L33: 2.5297 L12: 4.1236 REMARK 3 L13: -2.6764 L23: -2.9297 REMARK 3 S TENSOR REMARK 3 S11: -0.4023 S12: 0.6188 S13: 0.8094 REMARK 3 S21: -1.1840 S22: 0.3922 S23: 0.2350 REMARK 3 S31: -0.1176 S32: -0.1813 S33: -0.0977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 16:32) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5481 55.8998 31.2764 REMARK 3 T TENSOR REMARK 3 T11: 0.9279 T22: 0.8893 REMARK 3 T33: 0.8426 T12: -0.2468 REMARK 3 T13: -0.1751 T23: 0.2831 REMARK 3 L TENSOR REMARK 3 L11: 4.7083 L22: 9.4348 REMARK 3 L33: 8.2870 L12: -6.6000 REMARK 3 L13: -1.5540 L23: 0.9886 REMARK 3 S TENSOR REMARK 3 S11: 0.4944 S12: 1.4690 S13: 0.9370 REMARK 3 S21: -1.1794 S22: -0.6160 S23: -0.1414 REMARK 3 S31: -0.0350 S32: -0.7282 S33: 0.0664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 33:94) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6139 50.2551 39.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.2300 REMARK 3 T33: 0.3952 T12: -0.0336 REMARK 3 T13: -0.1209 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 4.5675 L22: 5.2418 REMARK 3 L33: 4.4861 L12: -0.6738 REMARK 3 L13: -1.9173 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.5450 S13: 0.9237 REMARK 3 S21: -0.3718 S22: -0.0292 S23: 0.2051 REMARK 3 S31: -0.9566 S32: -0.0987 S33: 0.0040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 95:121) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0553 33.1500 24.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.3632 REMARK 3 T33: 0.2239 T12: 0.0270 REMARK 3 T13: -0.0280 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 5.6393 L22: 4.6161 REMARK 3 L33: 7.2431 L12: 2.7001 REMARK 3 L13: -2.0740 L23: 3.2317 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: 0.5545 S13: 0.3494 REMARK 3 S21: -0.5294 S22: 0.1497 S23: -0.0414 REMARK 3 S31: -0.5511 S32: 0.0449 S33: -0.0205 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 122:302) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4750 28.3929 34.7867 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1260 REMARK 3 T33: 0.1514 T12: 0.0095 REMARK 3 T13: 0.0096 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6354 L22: 0.8949 REMARK 3 L33: 1.6979 L12: 0.1035 REMARK 3 L13: -0.0890 L23: 0.1063 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.1323 S13: 0.0404 REMARK 3 S21: -0.0394 S22: -0.0081 S23: 0.0793 REMARK 3 S31: 0.0038 S32: -0.0917 S33: 0.0301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 24.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79300 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 18% PEG 8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.28700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.28700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.63800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.34200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.63800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.34200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.28700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.63800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.34200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.28700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.63800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.34200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.27600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.28700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 754 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 813 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 851 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 943 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 627 O HOH A 663 2.10 REMARK 500 O HOH A 502 O HOH A 506 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 39.35 70.59 REMARK 500 ASN A 27 -157.82 -154.83 REMARK 500 SER A 29 76.03 -116.85 REMARK 500 ASN A 118 46.12 -144.83 REMARK 500 ASP A 200 46.48 -145.55 REMARK 500 ASP A 219 81.60 64.55 REMARK 500 THR A 226 -165.99 -160.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 950 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 139 OG REMARK 620 2 SER A 302 O 93.4 REMARK 620 3 SER A 302 OXT 90.9 2.6 REMARK 620 4 HOH A 571 O 91.4 3.1 2.0 REMARK 620 5 HOH A 615 O 92.4 2.1 2.1 1.2 REMARK 620 6 HOH A 709 O 93.1 5.3 5.4 3.5 3.6 REMARK 620 7 HOH A 711 O 92.6 5.0 4.9 2.9 3.1 0.6 REMARK 620 8 HOH A 723 O 89.4 5.4 3.6 2.3 3.5 4.0 3.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 143 O REMARK 620 2 LEU A 145 O 85.5 REMARK 620 3 HOH A 546 O 82.2 71.2 REMARK 620 4 HOH A 721 O 149.0 72.4 109.6 REMARK 620 5 HOH A 770 O 83.0 97.8 162.2 78.9 REMARK 620 6 HOH A 874 O 151.0 111.3 81.3 59.8 116.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD1 REMARK 620 2 ASP A 187 OD2 51.9 REMARK 620 3 HOH A 513 O 37.5 78.6 REMARK 620 4 HOH A 535 O 33.8 77.8 5.1 REMARK 620 5 HOH A 592 O 35.2 79.8 5.6 2.0 REMARK 620 6 HOH A 604 O 38.5 78.6 1.5 6.6 7.1 REMARK 620 7 HOH A 621 O 38.6 81.4 3.3 4.8 4.0 4.4 REMARK 620 8 HOH A 694 O 32.6 75.0 4.9 3.2 5.2 6.1 6.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91794 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5UXB RELATED DB: PDB REMARK 900 RELATED ID: 5UXC RELATED DB: PDB REMARK 900 RELATED ID: 5UXD RELATED DB: PDB DBREF 5UXA A 1 302 UNP O32553 O32553_ECOLX 1 302 SEQRES 1 A 302 MET SER LYS ASP ILE LYS GLN VAL ILE GLU ILE ALA LYS SEQRES 2 A 302 LYS HIS ASN LEU PHE LEU LYS GLU GLU THR ILE GLN PHE SEQRES 3 A 302 ASN GLU SER GLY LEU ASP PHE GLN ALA VAL PHE ALA GLN SEQRES 4 A 302 ASP ASN ASN GLY ILE ASP TRP VAL LEU ARG LEU PRO ARG SEQRES 5 A 302 ARG GLU ASP VAL MET PRO ARG THR LYS VAL GLU LYS GLN SEQRES 6 A 302 ALA LEU ASP LEU VAL ASN LYS TYR ALA ILE SER PHE GLN SEQRES 7 A 302 ALA PRO ASN TRP ILE ILE TYR THR GLU GLU LEU ILE ALA SEQRES 8 A 302 TYR LYS LYS LEU ASP GLY VAL PRO ALA GLY THR ILE ASP SEQRES 9 A 302 HIS ASN ILE GLY ASN TYR ILE TRP GLU ILE ASP ILE ASN SEQRES 10 A 302 ASN VAL PRO GLU LEU PHE HIS LYS SER LEU GLY ARG VAL SEQRES 11 A 302 LEU ALA GLU LEU HIS SER ILE PRO SER ASN LYS ALA ALA SEQRES 12 A 302 ALA LEU ASP LEU VAL VAL HIS THR PRO GLU GLU ALA ARG SEQRES 13 A 302 MET SER MET LYS GLN ARG MET ASP ALA VAL ARG ALA LYS SEQRES 14 A 302 PHE GLY VAL GLY GLU ASN LEU TRP ASN ARG TRP GLN ALA SEQRES 15 A 302 TRP LEU ASN ASP ASP ASP MET TRP PRO LYS LYS THR GLY SEQRES 16 A 302 LEU ILE HIS GLY ASP VAL HIS ALA GLY HIS THR MET ILE SEQRES 17 A 302 ASP LYS ASP ALA ASN VAL THR GLY LEU ILE ASP TRP THR SEQRES 18 A 302 GLU ALA LYS VAL THR ASP VAL SER HIS ASP PHE ILE PHE SEQRES 19 A 302 ASN TYR ARG ALA PHE GLY GLU GLU GLY LEU GLU ALA LEU SEQRES 20 A 302 ILE LEU ALA TYR LYS GLU ILE GLY GLY TYR TYR TRP PRO SEQRES 21 A 302 LYS MET LYS GLU HIS ILE ILE GLU LEU ASN ALA ALA TYR SEQRES 22 A 302 PRO VAL SER ILE ALA GLU PHE ALA LEU VAL SER GLY ILE SEQRES 23 A 302 GLU GLU TYR GLU GLN MET ALA LYS GLU ALA LEU GLU VAL SEQRES 24 A 302 GLN GLY SER HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *450(H2 O) HELIX 1 AA1 SER A 2 LYS A 14 1 13 HELIX 2 AA2 LYS A 20 ILE A 24 5 5 HELIX 3 AA3 ASP A 55 ALA A 74 1 20 HELIX 4 AA4 ASP A 115 VAL A 119 5 5 HELIX 5 AA5 PRO A 120 SER A 136 1 17 HELIX 6 AA6 PRO A 138 ALA A 144 1 7 HELIX 7 AA7 THR A 151 GLY A 171 1 21 HELIX 8 AA8 GLY A 173 ASP A 186 1 14 HELIX 9 AA9 ASP A 187 TRP A 190 5 4 HELIX 10 AB1 HIS A 202 GLY A 204 5 3 HELIX 11 AB2 ASP A 227 ASP A 231 5 5 HELIX 12 AB3 PHE A 232 ILE A 254 1 23 HELIX 13 AB4 LYS A 261 ALA A 272 1 12 HELIX 14 AB5 ALA A 272 GLY A 285 1 14 HELIX 15 AB6 ILE A 286 LEU A 297 1 12 SHEET 1 AA1 5 GLN A 25 SER A 29 0 SHEET 2 AA1 5 PHE A 33 GLN A 39 -1 O PHE A 37 N GLN A 25 SHEET 3 AA1 5 ASP A 45 PRO A 51 -1 O TRP A 46 N ALA A 38 SHEET 4 AA1 5 ILE A 90 LYS A 93 -1 O ILE A 90 N ARG A 49 SHEET 5 AA1 5 ILE A 84 TYR A 85 -1 N ILE A 84 O ALA A 91 SHEET 1 AA2 3 VAL A 98 PRO A 99 0 SHEET 2 AA2 3 THR A 206 ILE A 208 -1 O ILE A 208 N VAL A 98 SHEET 3 AA2 3 VAL A 214 LEU A 217 -1 O GLY A 216 N MET A 207 SHEET 1 AA3 2 GLY A 195 ILE A 197 0 SHEET 2 AA3 2 LYS A 224 THR A 226 -1 O LYS A 224 N ILE A 197 LINK OG SER A 139 CA CA A 401 1555 6555 2.33 LINK O ALA A 143 CA CA A 403 1555 1555 2.43 LINK O LEU A 145 CA CA A 403 1555 1555 2.49 LINK OD1 ASP A 187 CA CA A 402 1555 8456 2.56 LINK OD2 ASP A 187 CA CA A 402 1555 8456 2.38 LINK O SER A 302 CA CA A 401 1555 1555 2.59 LINK OXT SER A 302 CA CA A 401 1555 1555 2.45 LINK CA CA A 401 O HOH A 571 1555 1555 2.33 LINK CA CA A 401 O HOH A 615 1555 6554 2.45 LINK CA CA A 401 O HOH A 709 1555 3655 2.41 LINK CA CA A 401 O HOH A 711 1555 6554 2.44 LINK CA CA A 401 O HOH A 723 1555 1555 2.50 LINK CA CA A 402 O HOH A 513 1555 1555 2.41 LINK CA CA A 402 O HOH A 535 1555 8556 2.28 LINK CA CA A 402 O HOH A 592 1555 1555 3.03 LINK CA CA A 402 O HOH A 604 1555 8556 2.67 LINK CA CA A 402 O HOH A 621 1555 1555 2.49 LINK CA CA A 402 O HOH A 694 1555 1555 2.47 LINK CA CA A 403 O HOH A 546 1555 1555 2.47 LINK CA CA A 403 O HOH A 721 1555 1555 2.52 LINK CA CA A 403 O HOH A 770 1555 1555 2.33 LINK CA CA A 403 O HOH A 874 1555 1555 2.40 SITE 1 AC1 7 SER A 139 SER A 302 HOH A 571 HOH A 615 SITE 2 AC1 7 HOH A 709 HOH A 711 HOH A 723 SITE 1 AC2 7 ASP A 187 HOH A 513 HOH A 535 HOH A 592 SITE 2 AC2 7 HOH A 604 HOH A 621 HOH A 694 SITE 1 AC3 6 ALA A 143 LEU A 145 HOH A 546 HOH A 721 SITE 2 AC3 6 HOH A 770 HOH A 874 CRYST1 67.276 116.684 92.574 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010802 0.00000