HEADER TRANSFERASE 23-FEB-17 5UXM TITLE TYPE II DAH7PS FROM PSEUDOMONAS AERUGINOSA WITH TRP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.54; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: PA2843; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, DAH7PS, 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE KEYWDS 2 SYNTHASE, SHIKIMATE PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR O.W.STERRITT,G.B.JAMESON,E.J.PARKER REVDAT 5 04-OCT-23 5UXM 1 REMARK REVDAT 4 20-NOV-19 5UXM 1 LINK REVDAT 3 16-MAY-18 5UXM 1 JRNL REVDAT 2 02-MAY-18 5UXM 1 JRNL REVDAT 1 28-FEB-18 5UXM 0 JRNL AUTH O.W.STERRITT,S.A.KESSANS,G.B.JAMESON,E.J.PARKER JRNL TITL A PSEUDOISOSTRUCTURAL TYPE II DAH7PS ENZYME FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA: ALTERNATIVE EVOLUTIONARY STRATEGIES TO CONTROL JRNL TITL 3 SHIKIMATE PATHWAY FLUX. JRNL REF BIOCHEMISTRY V. 57 2667 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29608284 JRNL DOI 10.1021/ACS.BIOCHEM.8B00082 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 66588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4861 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3692 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3412 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5034 ; 1.432 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7822 ; 0.951 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 5.922 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.007 ;23.626 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;11.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4377 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 906 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1862 ; 1.332 ; 1.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1861 ; 1.330 ; 1.907 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2350 ; 2.195 ; 2.855 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2351 ; 2.195 ; 2.855 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1830 ; 1.760 ; 2.062 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1822 ; 1.760 ; 2.058 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2669 ; 2.822 ; 3.018 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4508 ; 4.622 ;16.020 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4330 ; 4.422 ;15.519 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) WATER REMARK 200 COOLED SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 75.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B7O REMARK 200 REMARK 200 REMARK: RECTANGULAR ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.5, 0.8 M REMARK 280 SODIUM FORMATE, 1 MM COBALT CHLORIDE, 1 MM PHOSPHOENOL PYRUVATE REMARK 280 26 % PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.18500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.80000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.18500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.80000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.84000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.18500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.84000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.18500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -115.60000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -115.60000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 144 CD OE1 OE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 ARG A 184 CD NE CZ NH1 NH2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 ARG A 214 NE CZ NH1 NH2 REMARK 470 ARG A 225 CD NE CZ NH1 NH2 REMARK 470 LEU A 250 CG CD1 CD2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 408 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 LEU A 415 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 76 C SER A 77 N 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 218 -140.31 -94.77 REMARK 500 ASP A 219 -7.38 85.94 REMARK 500 THR A 421 -81.33 -129.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 505 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 352 NE2 REMARK 620 2 GLU A 394 OE1 88.0 REMARK 620 3 GLU A 394 OE2 86.6 55.5 REMARK 620 4 ASP A 424 OD2 94.2 161.9 106.7 REMARK 620 5 HOH A 739 O 86.9 113.9 167.8 84.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B7O RELATED DB: PDB REMARK 900 USED IN MOLECULAR REPLACEMENT REMARK 900 RELATED ID: 5UXN RELATED DB: PDB REMARK 900 RELATED ID: 5UXO RELATED DB: PDB DBREF 5UXM A 2 448 UNP Q9I000 Q9I000_PSEAE 2 448 SEQADV 5UXM GLY A -4 UNP Q9I000 EXPRESSION TAG SEQADV 5UXM SER A -3 UNP Q9I000 EXPRESSION TAG SEQADV 5UXM GLY A -2 UNP Q9I000 EXPRESSION TAG SEQADV 5UXM SER A -1 UNP Q9I000 EXPRESSION TAG SEQADV 5UXM GLY A 0 UNP Q9I000 EXPRESSION TAG SEQADV 5UXM ALA A 1 UNP Q9I000 EXPRESSION TAG SEQRES 1 A 453 GLY SER GLY SER GLY ALA SER GLN SER TRP SER PRO GLU SEQRES 2 A 453 SER TRP ARG ALA LYS PRO ILE GLN GLN GLN PRO GLU TYR SEQRES 3 A 453 PRO ASP ALA ALA HIS LEU ALA ARG VAL GLU GLN THR LEU SEQRES 4 A 453 ALA GLY TYR PRO PRO LEU VAL PHE ALA GLY GLU ALA ARG SEQRES 5 A 453 GLU LEU ARG ARG GLN PHE ALA GLU VAL THR ALA GLY ARG SEQRES 6 A 453 ALA PHE LEU LEU GLN GLY GLY ASP CYS ALA GLU SER PHE SEQRES 7 A 453 ALA GLU PHE SER ALA ALA LYS ILE ARG ASP THR PHE LYS SEQRES 8 A 453 VAL LEU LEU GLN MET ALA VAL VAL MET THR PHE ALA ALA SEQRES 9 A 453 GLY CYS PRO VAL VAL LYS VAL GLY ARG MET ALA GLY GLN SEQRES 10 A 453 PHE ALA LYS PRO ARG SER SER GLY ASP GLU THR GLN ASN SEQRES 11 A 453 GLY VAL THR LEU PRO ALA TYR ARG GLY ASP ILE VAL ASN SEQRES 12 A 453 GLY ILE GLY PHE ASP GLU LYS SER ARG VAL PRO ASP PRO SEQRES 13 A 453 GLU ARG LEU LEU GLN ALA TYR HIS GLN SER THR ALA SER SEQRES 14 A 453 LEU ASN LEU LEU ARG ALA PHE ALA GLN GLY GLY PHE ALA SEQRES 15 A 453 ASP LEU HIS GLN VAL HIS ARG TRP ASN LEU ASP PHE ILE SEQRES 16 A 453 ALA ASN SER ALA LEU ALA GLU ARG TYR GLN GLN LEU ALA SEQRES 17 A 453 ASP ARG ILE ASP GLU THR LEU ALA PHE MET ARG ALA CYS SEQRES 18 A 453 GLY LEU ASP SER ALA PRO GLN LEU ARG GLU THR SER PHE SEQRES 19 A 453 PHE THR ALA HIS GLU ALA LEU LEU LEU ASN TYR GLU GLU SEQRES 20 A 453 ALA LEU THR ARG ARG ASP SER LEU THR GLY GLU TRP TYR SEQRES 21 A 453 ASP CYS SER ALA HIS MET LEU TRP ILE GLY ASP ARG THR SEQRES 22 A 453 ARG GLN ILE ASP GLY ALA HIS VAL GLU MET LEU ARG GLY SEQRES 23 A 453 VAL GLY ASN PRO ILE GLY VAL LYS VAL GLY PRO SER MET SEQRES 24 A 453 ASP SER GLU GLU LEU ILE ARG LEU ILE ASP ILE LEU ASN SEQRES 25 A 453 PRO ASP ASN ASP PRO GLY ARG LEU ASN LEU ILE VAL ARG SEQRES 26 A 453 MET GLY ALA ASP LYS VAL GLY ASP HIS LEU PRO ARG LEU SEQRES 27 A 453 ILE GLN ALA ILE GLN ARG GLU GLY ARG GLN VAL LEU TRP SEQRES 28 A 453 SER SER ASP PRO MET HIS GLY ASN THR ILE LYS ALA SER SEQRES 29 A 453 SER GLY TYR LYS THR ARG ASP PHE ALA ARG VAL LEU ALA SEQRES 30 A 453 GLU VAL ARG GLN PHE PHE GLU VAL HIS GLN ALA GLU GLY SEQRES 31 A 453 SER TYR ALA GLY GLY ILE HIS ILE GLU MET THR GLY GLN SEQRES 32 A 453 ASN VAL THR GLU CYS ILE GLY GLY SER ARG PRO ILE THR SEQRES 33 A 453 GLU ASP GLY LEU SER ASP ARG TYR HIS THR HIS CYS ASP SEQRES 34 A 453 PRO ARG LEU ASN ALA ASP GLN SER LEU GLU LEU ALA PHE SEQRES 35 A 453 LEU ILE ALA GLU THR LEU LYS GLN VAL ARG ARG HET PEP A 501 10 HET TRP A 502 15 HET PO4 A 503 5 HET PO4 A 504 5 HET CO A 505 1 HET CL A 506 1 HET CL A 507 1 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM TRP TRYPTOPHAN HETNAM PO4 PHOSPHATE ION HETNAM CO COBALT (II) ION HETNAM CL CHLORIDE ION FORMUL 2 PEP C3 H5 O6 P FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 CO CO 2+ FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *320(H2 O) HELIX 1 AA1 GLU A 8 LYS A 13 5 6 HELIX 2 AA2 ASP A 23 GLY A 36 1 14 HELIX 3 AA3 PHE A 42 ALA A 58 1 17 HELIX 4 AA4 SER A 77 GLY A 100 1 24 HELIX 5 AA5 ASP A 143 VAL A 148 1 6 HELIX 6 AA6 PRO A 151 GLY A 174 1 24 HELIX 7 AA7 ASP A 178 ASN A 186 5 9 HELIX 8 AA8 SER A 193 CYS A 216 1 24 HELIX 9 AA9 ALA A 221 ARG A 225 5 5 HELIX 10 AB1 LEU A 237 LEU A 244 1 8 HELIX 11 AB2 GLY A 273 GLY A 281 1 9 HELIX 12 AB3 ASP A 295 ASN A 307 1 13 HELIX 13 AB4 LYS A 325 GLU A 340 1 16 HELIX 14 AB5 ASP A 366 GLY A 385 1 20 HELIX 15 AB6 ASP A 413 THR A 421 5 9 HELIX 16 AB7 ASN A 428 ARG A 447 1 20 SHEET 1 AA1 9 PHE A 62 GLY A 67 0 SHEET 2 AA1 9 VAL A 103 ARG A 108 1 O VAL A 104 N LEU A 64 SHEET 3 AA1 9 PHE A 230 GLU A 234 1 O PHE A 230 N GLY A 107 SHEET 4 AA1 9 MET A 261 ILE A 264 1 O MET A 261 N THR A 231 SHEET 5 AA1 9 ILE A 286 VAL A 290 1 O LYS A 289 N ILE A 264 SHEET 6 AA1 9 LEU A 315 VAL A 319 1 O ILE A 318 N VAL A 288 SHEET 7 AA1 9 LEU A 345 SER A 348 1 O SER A 347 N VAL A 319 SHEET 8 AA1 9 GLY A 390 GLU A 394 1 O HIS A 392 N SER A 348 SHEET 9 AA1 9 PHE A 62 GLY A 67 1 N GLN A 65 O ILE A 393 SHEET 1 AA2 2 ASP A 121 GLN A 124 0 SHEET 2 AA2 2 VAL A 127 PRO A 130 -1 O LEU A 129 N GLU A 122 SHEET 1 AA3 2 THR A 245 ARG A 247 0 SHEET 2 AA3 2 TRP A 254 ASP A 256 -1 O TYR A 255 N ARG A 246 SHEET 1 AA4 2 THR A 355 LYS A 357 0 SHEET 2 AA4 2 LYS A 363 ARG A 365 -1 O THR A 364 N ILE A 356 SSBOND 1 CYS A 69 CYS A 423 1555 1555 2.04 LINK NE2 HIS A 352 CO CO A 505 1555 1555 2.33 LINK OE1 GLU A 394 CO CO A 505 1555 1555 2.08 LINK OE2 GLU A 394 CO CO A 505 1555 1555 2.45 LINK OD2 ASP A 424 CO CO A 505 1555 1555 2.28 LINK CO CO A 505 O HOH A 739 1555 1555 1.84 SITE 1 AC1 13 ARG A 108 PRO A 116 GLY A 265 ASP A 266 SITE 2 AC1 13 ARG A 267 LYS A 289 ARG A 320 HIS A 352 SITE 3 AC1 13 HOH A 621 HOH A 629 HOH A 655 HOH A 668 SITE 4 AC1 13 HOH A 739 SITE 1 AC2 10 LYS A 105 ALA A 177 TRP A 185 CYS A 216 SITE 2 AC2 10 GLN A 223 GLU A 226 THR A 227 HOH A 610 SITE 3 AC2 10 HOH A 691 HOH A 814 SITE 1 AC3 6 ARG A 117 SER A 118 LYS A 357 LYS A 363 SITE 2 AC3 6 HOH A 685 HOH A 809 SITE 1 AC4 3 ASP A 23 HIS A 26 HOH A 789 SITE 1 AC5 5 CYS A 69 HIS A 352 GLU A 394 ASP A 424 SITE 2 AC5 5 HOH A 739 SITE 1 AC6 1 ARG A 247 SITE 1 AC7 3 ARG A 246 HOH A 873 HOH A 909 CRYST1 81.680 100.370 115.600 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008651 0.00000