HEADER TRANSFERASE 23-FEB-17 5UXY TITLE THE CRYSTAL STRUCTURE OF A DEGV FAMILY PROTEIN FROM EUBACTERIUM TITLE 2 ELIGENS LOADED WITH HEPTADECANOIC ACID TO 1.80 ANGSTROM RESOLUTION TITLE 3 (ALTERNATIVE REFINEMENT OF PDB 3FDJ WITH HEPTADECANOIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGV FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [EUBACTERIUM] ELIGENS; SOURCE 3 ORGANISM_TAXID: 39485; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS DEGV, GUT MICROBIOME, STRUCTURAL GENOMICS, PSI-2, HEPTADECANOIC ACID, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,M.ERICSON,C.SUBRAMANIAN,S.W.WHITE,C.O.ROCK REVDAT 1 21-NOV-18 5UXY 0 JRNL AUTH M.G.CUYPERS,M.ERICSON,C.SUBRAMANIAN,T.C.BROUSSARD, JRNL AUTH 2 D.J.MILLER,S.W.WHITE,C.O.ROCK JRNL TITL THE CRYSTAL STRUCTURE OF THE STAPHYLOCOCCUS AUREUS FATTY JRNL TITL 2 ACID KINASE (FAK) B1 PROTEIN LOADED WITH PALMITIC ACID TO JRNL TITL 3 1.83 ANGSTROEM RESOLUTION JRNL REF J.BIOL.CHEM. 2018 JRNL REFN ESSN 1083-351X REMARK 0 REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3FDJ REMARK 0 AUTH M.E.CUFF,R.HENDRICKS,L.FREEMAN,A.JOACHIMIAK REMARK 0 TITL THE STRUCTURE OF A DEGV FAMILY PROTEIN FROM EUBACTERIUM REMARK 0 TITL 2 ELIGENS. REMARK 0 REF TO BE PUBLISHED REMARK 0 REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9316 - 4.0026 0.99 2815 153 0.1396 0.1524 REMARK 3 2 4.0026 - 3.1771 1.00 2646 137 0.1313 0.1704 REMARK 3 3 3.1771 - 2.7756 1.00 2617 146 0.1553 0.1869 REMARK 3 4 2.7756 - 2.5218 1.00 2565 145 0.1578 0.2265 REMARK 3 5 2.5218 - 2.3411 1.00 2585 139 0.1579 0.2112 REMARK 3 6 2.3411 - 2.2030 1.00 2551 123 0.1562 0.2407 REMARK 3 7 2.2030 - 2.0927 1.00 2568 126 0.1622 0.2015 REMARK 3 8 2.0927 - 2.0016 1.00 2541 132 0.1615 0.1929 REMARK 3 9 2.0016 - 1.9246 0.99 2511 130 0.1755 0.2264 REMARK 3 10 1.9246 - 1.8581 0.99 2486 136 0.1879 0.2677 REMARK 3 11 1.8581 - 1.8000 0.98 2452 145 0.1946 0.2618 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2208 REMARK 3 ANGLE : 1.403 2973 REMARK 3 CHIRALITY : 0.089 339 REMARK 3 PLANARITY : 0.008 385 REMARK 3 DIHEDRAL : 10.047 1841 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942, 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SAGITALLY FOCUSED SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8730 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.27900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.72250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.63950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.72250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.91850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.72250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.72250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.63950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.72250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.72250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 139.91850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.27900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 747 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 671 O HOH A 707 2.00 REMARK 500 O HOH A 422 O HOH A 536 2.01 REMARK 500 O HOH A 706 O HOH A 722 2.03 REMARK 500 O HOH A 689 O HOH A 702 2.03 REMARK 500 O HOH A 421 O HOH A 439 2.04 REMARK 500 O HOH A 704 O HOH A 733 2.09 REMARK 500 O HOH A 440 O HOH A 631 2.10 REMARK 500 O HOH A 612 O HOH A 713 2.10 REMARK 500 NH1 ARG A 15 O HOH A 401 2.11 REMARK 500 O HOH A 402 O HOH A 459 2.19 REMARK 500 O HOH A 667 O HOH A 696 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 199 CB CYS A 199 SG -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 -3.42 72.27 REMARK 500 ASP A 36 -164.98 -127.51 REMARK 500 SER A 114 -145.41 -161.74 REMARK 500 LYS A 149 35.04 -99.99 REMARK 500 ASN A 230 56.04 -147.15 REMARK 500 GLU A 264 163.82 68.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 778 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 157 O REMARK 620 2 ALA A 176 O 78.7 REMARK 620 3 VAL A 178 O 156.9 79.1 REMARK 620 4 ILE A 181 O 102.1 108.2 90.5 REMARK 620 5 HOH A 631 O 82.2 78.4 87.6 172.6 REMARK 620 6 HOH A 651 O 100.2 163.0 99.3 88.7 84.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X90 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FDJ RELATED DB: PDB REMARK 900 3FDJ IS AN ORIGINAL DATA. THE CURRENT ENTRY IS AN ALTERNATIVE REMARK 900 MODELING OF 3FDJ. IN PARTICULAR, POLYETHYLENE GLYCOL RESIDUES IN REMARK 900 3FDJ WERE ALTERNATIVELY MODELED WITH FATTY ACID (HEPTADECANOIC ACID) REMARK 900 , CONSISTENT WITH FATTY ACID-BINDING PROTEIN FUNCTION DBREF 5UXY A -2 275 UNP D0VX07 D0VX07_9FIRM 1 278 SEQRES 1 A 278 SER ASN ALA MSE ARG LEU VAL ALA ASP SER ALA CYS ASP SEQRES 2 A 278 ILE LYS GLU LEU ARG GLY MSE VAL PHE LYS ALA VAL PRO SEQRES 3 A 278 LEU THR ILE SER THR ASP ASN GLU GLU PHE CYS ASP ASP SEQRES 4 A 278 GLY GLN LEU ASP ILE HIS ARG MSE LEU ASP ILE LEU GLU SEQRES 5 A 278 LYS HIS LYS GLY ARG SER TYR THR ALA CYS PRO GLY ILE SEQRES 6 A 278 ASP ALA TRP LEU GLU ALA PHE GLY ASP ASP ASP GLU ILE SEQRES 7 A 278 PHE VAL VAL THR ILE THR ALA GLY MSE SER GLY THR TYR SEQRES 8 A 278 ASN SER ALA MSE ALA ALA ARG ALA VAL TYR LEU GLU GLU SEQRES 9 A 278 HIS PRO GLN ALA LYS VAL ARG VAL ILE ASP SER LYS SER SEQRES 10 A 278 THR GLY PRO GLN MSE ARG ILE ILE LEU GLU GLN LEU GLN SEQRES 11 A 278 GLN MSE ILE GLU GLU GLY LYS LYS PHE GLU GLU ILE ASP SEQRES 12 A 278 GLY ALA ILE ASP ALA TYR MSE GLN LYS THR ARG LEU PHE SEQRES 13 A 278 CYS SER LEU LYS SER LEU HIS ASN LEU ALA GLN ASN GLY SEQRES 14 A 278 ARG VAL SER LYS VAL VAL ALA SER ALA ALA GLU VAL LEU SEQRES 15 A 278 GLY ILE SER VAL ILE GLY THR ALA SER SER HIS GLY THR SEQRES 16 A 278 LEU GLU ALA ILE GLY LYS CYS ARG GLY ASP LYS LYS LEU SEQRES 17 A 278 LEU VAL LYS LEU GLN ALA LEU LEU ASP ASP ALA GLY TYR SEQRES 18 A 278 GLU GLY GLY LYS LEU ARG ILE CYS HIS VAL GLU ASN GLU SEQRES 19 A 278 ALA LEU ALA ASP LYS ILE ALA ASP MSE ILE LYS GLN ALA SEQRES 20 A 278 TYR GLY THR THR ASP VAL CYS VAL TYR LYS ALA GLY GLY SEQRES 21 A 278 LEU CYS SER TYR TYR ALA GLU ARG GLY GLY ILE ILE LEU SEQRES 22 A 278 SER CYS GLU THR LYS MODRES 5UXY MSE A 1 MET MODIFIED RESIDUE MODRES 5UXY MSE A 17 MET MODIFIED RESIDUE MODRES 5UXY MSE A 44 MET MODIFIED RESIDUE MODRES 5UXY MSE A 84 MET MODIFIED RESIDUE MODRES 5UXY MSE A 92 MET MODIFIED RESIDUE MODRES 5UXY MSE A 119 MET MODIFIED RESIDUE MODRES 5UXY MSE A 129 MET MODIFIED RESIDUE MODRES 5UXY MSE A 147 MET MODIFIED RESIDUE MODRES 5UXY MSE A 240 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 44 8 HET MSE A 84 16 HET MSE A 92 8 HET MSE A 119 8 HET MSE A 129 8 HET MSE A 147 8 HET MSE A 240 8 HET NA A 301 1 HET ACY A 302 4 HET X90 A 303 19 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM ACY ACETIC ACID HETNAM X90 HEPTADECANOIC ACID FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 ACY C2 H4 O2 FORMUL 4 X90 C17 H34 O2 FORMUL 5 HOH *378(H2 O) HELIX 1 AA1 ALA A 8 ASP A 10 5 3 HELIX 2 AA2 ASP A 40 HIS A 51 1 12 HELIX 3 AA3 GLY A 61 GLY A 70 1 10 HELIX 4 AA4 GLY A 86 GLU A 100 1 15 HELIX 5 AA5 THR A 115 GLU A 132 1 18 HELIX 6 AA6 LYS A 135 GLN A 148 1 14 HELIX 7 AA7 LEU A 159 ASN A 165 1 7 HELIX 8 AA8 SER A 169 ALA A 176 1 8 HELIX 9 AA9 GLY A 201 GLY A 217 1 17 HELIX 10 AB1 ASN A 230 GLY A 246 1 17 HELIX 11 AB2 GLY A 256 GLU A 264 1 9 SHEET 1 AA1 4 VAL A 18 VAL A 22 0 SHEET 2 AA1 4 ARG A 2 ASP A 6 1 N LEU A 3 O VAL A 18 SHEET 3 AA1 4 GLU A 74 THR A 79 1 O VAL A 78 N VAL A 4 SHEET 4 AA1 4 LYS A 106 ASP A 111 1 O ILE A 110 N VAL A 77 SHEET 1 AA2 3 GLU A 32 CYS A 34 0 SHEET 2 AA2 3 THR A 25 SER A 27 -1 N ILE A 26 O PHE A 33 SHEET 3 AA2 3 TYR A 56 ALA A 58 -1 O TYR A 56 N SER A 27 SHEET 1 AA3 6 LEU A 193 ARG A 200 0 SHEET 2 AA3 6 ILE A 181 ALA A 187 -1 N ILE A 184 O ILE A 196 SHEET 3 AA3 6 THR A 150 LEU A 156 -1 N LEU A 156 O VAL A 183 SHEET 4 AA3 6 ILE A 268 GLU A 273 -1 O LEU A 270 N PHE A 153 SHEET 5 AA3 6 LEU A 223 HIS A 227 -1 N ARG A 224 O SER A 271 SHEET 6 AA3 6 VAL A 250 LYS A 254 1 O CYS A 251 N ILE A 225 LINK C AALA A 0 N MSE A 1 1555 1555 1.34 LINK C BALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C GLY A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N VAL A 18 1555 1555 1.33 LINK C ARG A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C GLY A 83 N AMSE A 84 1555 1555 1.34 LINK C GLY A 83 N BMSE A 84 1555 1555 1.33 LINK C AMSE A 84 N SER A 85 1555 1555 1.34 LINK C BMSE A 84 N SER A 85 1555 1555 1.33 LINK C ALA A 91 N MSE A 92 1555 1555 1.35 LINK C MSE A 92 N ALA A 93 1555 1555 1.34 LINK C GLN A 118 N MSE A 119 1555 1555 1.32 LINK C MSE A 119 N ARG A 120 1555 1555 1.34 LINK C GLN A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N ILE A 130 1555 1555 1.34 LINK C TYR A 146 N MSE A 147 1555 1555 1.34 LINK C MSE A 147 N GLN A 148 1555 1555 1.33 LINK O LYS A 157 NA NA A 301 1555 1555 2.63 LINK O ALA A 176 NA NA A 301 1555 1555 2.51 LINK O VAL A 178 NA NA A 301 1555 1555 3.01 LINK O ILE A 181 NA NA A 301 1555 1555 2.35 LINK C ASP A 239 N MSE A 240 1555 1555 1.34 LINK C MSE A 240 N ILE A 241 1555 1555 1.34 LINK NA NA A 301 O HOH A 631 1555 1555 2.31 LINK NA NA A 301 O HOH A 651 1555 1555 2.27 SITE 1 AC1 6 LYS A 157 ALA A 176 VAL A 178 ILE A 181 SITE 2 AC1 6 HOH A 631 HOH A 651 SITE 1 AC2 8 ARG A 108 ASP A 144 ILE A 181 ARG A 200 SITE 2 AC2 8 HOH A 410 HOH A 435 HOH A 447 HOH A 622 SITE 1 AC3 10 LEU A 24 THR A 57 ALA A 58 ILE A 80 SITE 2 AC3 10 MSE A 84 SER A 85 ARG A 167 ALA A 187 SITE 3 AC3 10 TYR A 262 HOH A 412 CRYST1 57.445 57.445 186.558 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005360 0.00000