HEADER CELL ADHESION 25-FEB-17 5UZ8 TITLE CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC22-24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2288-2607; COMPND 5 SYNONYM: OTOCADHERIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A+ KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEINS, KEYWDS 2 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.PATEL,A.JAIGANESH,M.SOTOMAYOR REVDAT 5 04-OCT-23 5UZ8 1 LINK REVDAT 4 18-DEC-19 5UZ8 1 REMARK REVDAT 3 19-SEP-18 5UZ8 1 JRNL REVDAT 2 01-AUG-18 5UZ8 1 JRNL REVDAT 1 28-FEB-18 5UZ8 0 JRNL AUTH A.JAIGANESH,P.DE-LA-TORRE,A.A.PATEL,D.J.TERMINE, JRNL AUTH 2 F.VELEZ-CORTES,C.CHEN,M.SOTOMAYOR JRNL TITL ZOOMING IN ON CADHERIN-23: STRUCTURAL DIVERSITY AND JRNL TITL 2 POTENTIAL MECHANISMS OF INHERITED DEAFNESS. JRNL REF STRUCTURE V. 26 1210 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30033219 JRNL DOI 10.1016/J.STR.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 43480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2613 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2349 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3596 ; 1.496 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5503 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 6.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;39.872 ;25.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;10.954 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 0.760 ; 1.429 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1307 ; 0.759 ; 1.428 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1642 ; 1.304 ; 2.136 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1643 ; 1.303 ; 2.138 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 0.872 ; 1.521 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1302 ; 0.873 ; 1.518 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1935 ; 1.422 ; 2.244 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3050 ; 6.313 ;19.582 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3050 ; 6.313 ;19.582 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2265 A 2373 REMARK 3 RESIDUE RANGE : A 2609 A 2610 REMARK 3 RESIDUE RANGE : A 2607 A 2607 REMARK 3 ORIGIN FOR THE GROUP (A): -91.0577 135.1131 293.5208 REMARK 3 T TENSOR REMARK 3 T11: 0.0680 T22: 0.0443 REMARK 3 T33: 0.0525 T12: -0.0001 REMARK 3 T13: -0.0124 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.4861 L22: 2.1113 REMARK 3 L33: 2.9005 L12: -0.2952 REMARK 3 L13: -0.6046 L23: 1.1900 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.2523 S13: 0.1531 REMARK 3 S21: 0.2952 S22: 0.0636 S23: -0.1125 REMARK 3 S31: -0.0695 S32: 0.1568 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2374 A 2480 REMARK 3 RESIDUE RANGE : A 2608 A 2608 REMARK 3 RESIDUE RANGE : A 2605 A 2605 REMARK 3 ORIGIN FOR THE GROUP (A):-104.1591 108.3672 253.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0270 REMARK 3 T33: 0.0219 T12: 0.0039 REMARK 3 T13: 0.0129 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.2785 L22: 1.8540 REMARK 3 L33: 3.4783 L12: 0.3877 REMARK 3 L13: 0.4060 L23: 2.5082 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0605 S13: 0.0413 REMARK 3 S21: -0.0713 S22: 0.0226 S23: -0.0225 REMARK 3 S31: -0.1105 S32: -0.0197 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2481 A 2581 REMARK 3 RESIDUE RANGE : A 2604 A 2604 REMARK 3 ORIGIN FOR THE GROUP (A):-107.4664 78.0205 214.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0411 REMARK 3 T33: 0.0488 T12: -0.0168 REMARK 3 T13: 0.0251 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.3636 L22: 2.3773 REMARK 3 L33: 5.2842 L12: -0.4481 REMARK 3 L13: -0.2812 L23: 3.3773 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.0569 S13: -0.0748 REMARK 3 S21: -0.1177 S22: 0.0346 S23: -0.0135 REMARK 3 S31: -0.0713 S32: 0.1192 S33: -0.0916 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45949 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 3.5 M AMMONIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.76850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.60400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.76850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.60400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2264 REMARK 465 ASN A 2582 REMARK 465 ASP A 2583 REMARK 465 ASN A 2584 REMARK 465 LYS A 2585 REMARK 465 LEU A 2586 REMARK 465 ALA A 2587 REMARK 465 ALA A 2588 REMARK 465 ALA A 2589 REMARK 465 LEU A 2590 REMARK 465 GLU A 2591 REMARK 465 HIS A 2592 REMARK 465 HIS A 2593 REMARK 465 HIS A 2594 REMARK 465 HIS A 2595 REMARK 465 HIS A 2596 REMARK 465 HIS A 2597 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A2334 -102.44 -98.50 REMARK 500 ASN A2334 -102.61 -98.50 REMARK 500 ASP A2407 -167.07 -77.12 REMARK 500 ASP A2420 99.52 -162.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 2356 PRO A 2357 143.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3238 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A3239 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A3240 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A3241 DISTANCE = 7.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2266 O REMARK 620 2 ASP A2299 OD1 92.4 REMARK 620 3 ASP A2299 OD2 77.1 49.0 REMARK 620 4 ASP A2301 OD2 84.6 70.1 114.5 REMARK 620 5 ASN A2305 O 168.3 77.7 91.6 97.6 REMARK 620 6 ASP A2353 OD2 100.6 135.8 92.9 152.5 82.7 REMARK 620 7 HOH A3007 O 100.5 142.6 168.3 76.3 91.2 76.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2609 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2284 OE1 REMARK 620 2 GLU A2340 OE1 109.7 REMARK 620 3 GLU A2340 OE2 89.9 50.1 REMARK 620 4 ASP A2371 OD1 86.5 79.9 124.9 REMARK 620 5 ILE A2372 O 81.9 155.0 154.6 78.8 REMARK 620 6 ASP A2374 OD1 85.0 124.3 77.8 155.7 77.6 REMARK 620 7 ASP A2407 OD1 161.6 87.8 97.7 102.5 84.2 80.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2610 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2284 OE2 REMARK 620 2 ASP A2338 OD1 84.4 REMARK 620 3 GLU A2340 OE2 88.7 86.7 REMARK 620 4 ASP A2374 OD1 90.2 155.5 69.3 REMARK 620 5 ASP A2374 OD2 89.1 158.1 114.1 44.9 REMARK 620 6 HOH A2993 O 174.2 95.9 85.5 87.2 92.6 REMARK 620 7 HOH A3004 O 100.8 77.4 160.5 127.0 83.3 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2608 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2373 OD1 REMARK 620 2 ASN A2375 O 100.3 REMARK 620 3 ASP A2405 OD1 147.4 95.1 REMARK 620 4 ASP A2405 OD2 156.6 87.1 51.7 REMARK 620 5 ASP A2407 OD2 75.4 80.7 79.1 127.9 REMARK 620 6 PHE A2411 O 86.5 173.0 79.8 86.0 102.9 REMARK 620 7 ASP A2456 OD2 77.6 89.1 131.5 80.4 148.8 90.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2390 OE2 REMARK 620 2 GLU A2443 OE1 105.6 REMARK 620 3 GLU A2443 OE2 86.4 49.5 REMARK 620 4 ASP A2478 OD1 83.2 78.7 121.5 REMARK 620 5 VAL A2479 O 84.0 158.4 152.0 83.4 REMARK 620 6 ASP A2481 OD1 89.2 119.1 73.9 162.1 79.7 REMARK 620 7 ASP A2514 OD1 168.6 85.7 100.3 100.7 85.9 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2390 OE1 REMARK 620 2 ASP A2441 OD1 90.0 REMARK 620 3 GLU A2443 OE2 88.0 82.2 REMARK 620 4 ASP A2481 OD1 90.2 152.4 70.3 REMARK 620 5 ASP A2481 OD2 90.3 161.6 116.1 45.9 REMARK 620 6 GSH A2611 OE1 170.5 86.5 100.3 97.0 90.3 REMARK 620 7 HOH A2917 O 85.2 83.0 163.7 124.5 78.7 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2480 OD1 REMARK 620 2 CYS A2482 O 109.8 REMARK 620 3 ASP A2512 OD1 140.1 90.0 REMARK 620 4 ASP A2512 OD2 158.2 85.6 51.2 REMARK 620 5 ASP A2514 OD2 70.4 77.0 81.7 129.7 REMARK 620 6 ASN A2518 O 79.8 169.8 80.3 85.9 104.3 REMARK 620 7 ASP A2562 OD2 80.4 97.4 132.5 82.5 145.7 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 2611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ULU RELATED DB: PDB REMARK 900 RELATED ID: 5ULY RELATED DB: PDB REMARK 900 RELATED ID: 5UN2 RELATED DB: PDB DBREF 5UZ8 A 2265 2584 UNP Q99PF4 CAD23_MOUSE 2288 2607 SEQADV 5UZ8 MET A 2264 UNP Q99PF4 INITIATING METHIONINE SEQADV 5UZ8 LYS A 2585 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 LEU A 2586 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 ALA A 2587 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 ALA A 2588 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 ALA A 2589 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 LEU A 2590 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 GLU A 2591 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2592 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2593 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2594 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2595 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2596 UNP Q99PF4 EXPRESSION TAG SEQADV 5UZ8 HIS A 2597 UNP Q99PF4 EXPRESSION TAG SEQRES 1 A 334 MET ASP ASN THR PRO GLN PHE LYS PRO PHE GLY ILE THR SEQRES 2 A 334 TYR TYR THR GLU ARG VAL LEU GLU GLY ALA THR PRO GLY SEQRES 3 A 334 THR THR LEU ILE ALA VAL ALA ALA VAL ASP PRO ASP LYS SEQRES 4 A 334 GLY LEU ASN GLY LEU ILE THR TYR THR LEU LEU ASP LEU SEQRES 5 A 334 THR PRO PRO GLY TYR VAL GLN LEU GLU ASP SER SER ALA SEQRES 6 A 334 GLY LYS VAL ILE ALA ASN ARG THR VAL ASP TYR GLU GLU SEQRES 7 A 334 VAL HIS TRP LEU ASN PHE THR VAL ARG ALA SER ASP ASN SEQRES 8 A 334 GLY SER PRO PRO ARG ALA ALA GLU ILE PRO VAL TYR LEU SEQRES 9 A 334 GLU ILE VAL ASP ILE ASN ASP ASN ASN PRO ILE PHE ASP SEQRES 10 A 334 GLN PRO SER TYR GLN GLU ALA VAL PHE GLU ASP ILE ALA SEQRES 11 A 334 VAL GLY THR VAL ILE LEU ARG VAL THR ALA THR ASP ALA SEQRES 12 A 334 ASP SER GLY ASN PHE ALA LEU ILE GLU TYR SER LEU VAL SEQRES 13 A 334 ASP GLY GLU GLY LYS PHE ALA ILE ASN PRO ASN THR GLY SEQRES 14 A 334 ASP ILE SER VAL LEU SER SER LEU ASP ARG GLU LYS LYS SEQRES 15 A 334 ASP HIS TYR ILE LEU THR ALA LEU ALA LYS ASP ASN PRO SEQRES 16 A 334 GLY ASP VAL ALA SER ASN ARG ARG GLU ASN SER VAL GLN SEQRES 17 A 334 VAL VAL ILE ARG VAL LEU ASP VAL ASN ASP CYS ARG PRO SEQRES 18 A 334 GLN PHE SER LYS PRO GLN PHE SER THR SER VAL TYR GLU SEQRES 19 A 334 ASN GLU PRO ALA GLY THR SER VAL ILE THR MET LEU ALA SEQRES 20 A 334 THR ASP GLN ASP GLU GLY SER ASN SER GLN LEU THR TYR SEQRES 21 A 334 SER LEU GLU GLY PRO GLY MET GLU ALA PHE SER VAL ASP SEQRES 22 A 334 MET ASP SER GLY LEU VAL THR THR GLN ARG PRO LEU GLN SEQRES 23 A 334 SER TYR GLU ARG PHE ASN LEU THR VAL VAL ALA THR ASP SEQRES 24 A 334 GLY GLY GLU PRO PRO LEU TRP GLY THR THR MET LEU LEU SEQRES 25 A 334 VAL GLU VAL ILE ASP VAL ASN ASP ASN LYS LEU ALA ALA SEQRES 26 A 334 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET CL A2601 1 HET CL A2602 1 HET CL A2603 1 HET CA A2604 1 HET CA A2605 1 HET CA A2606 1 HET CA A2607 1 HET CA A2608 1 HET CA A2609 1 HET CA A2610 1 HET GSH A2611 20 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM GSH GLUTATHIONE FORMUL 2 CL 3(CL 1-) FORMUL 5 CA 7(CA 2+) FORMUL 12 GSH C10 H17 N3 O6 S FORMUL 13 HOH *541(H2 O) HELIX 1 AA1 LYS A 2302 LEU A 2307 5 6 HELIX 2 AA2 SER A 2408 ALA A 2412 5 5 HELIX 3 AA3 VAL A 2461 ARG A 2465 5 5 HELIX 4 AA4 GLU A 2515 GLN A 2520 5 6 HELIX 5 AA5 GLY A 2529 GLU A 2531 5 3 SHEET 1 AA1 2 GLN A2269 PHE A2270 0 SHEET 2 AA1 2 ALA A2297 VAL A2298 -1 O VAL A2298 N GLN A2269 SHEET 1 AA2 4 TYR A2278 LEU A2283 0 SHEET 2 AA2 4 ALA A2360 VAL A2370 1 O VAL A2370 N VAL A2282 SHEET 3 AA2 4 TRP A2344 SER A2352 -1 N PHE A2347 O VAL A2365 SHEET 4 AA2 4 THR A2309 THR A2316 -1 N THR A2316 O ASN A2346 SHEET 1 AA3 3 THR A2291 VAL A2295 0 SHEET 2 AA3 3 GLY A2329 ALA A2333 -1 O VAL A2331 N LEU A2292 SHEET 3 AA3 3 VAL A2321 LEU A2323 -1 N GLN A2322 O ILE A2332 SHEET 1 AA4 2 ILE A2378 PHE A2379 0 SHEET 2 AA4 2 ALA A2403 THR A2404 -1 O THR A2404 N ILE A2378 SHEET 1 AA5 4 TYR A2384 PHE A2389 0 SHEET 2 AA5 4 GLU A2467 LEU A2477 1 O LEU A2477 N VAL A2388 SHEET 3 AA5 4 HIS A2447 ASP A2456 -1 N LEU A2450 O VAL A2472 SHEET 4 AA5 4 ILE A2414 LEU A2418 -1 N SER A2417 O LEU A2453 SHEET 1 AA6 3 VAL A2397 ARG A2400 0 SHEET 2 AA6 3 ASP A2433 VAL A2436 -1 O ILE A2434 N ILE A2398 SHEET 3 AA6 3 PHE A2425 ILE A2427 -1 N ALA A2426 O SER A2435 SHEET 1 AA7 4 GLN A2490 TYR A2496 0 SHEET 2 AA7 4 TRP A2569 ILE A2579 1 O LEU A2575 N PHE A2491 SHEET 3 AA7 4 ARG A2553 THR A2561 -1 N VAL A2558 O THR A2572 SHEET 4 AA7 4 THR A2522 GLU A2526 -1 N SER A2524 O VAL A2559 SHEET 1 AA8 3 SER A2504 THR A2507 0 SHEET 2 AA8 3 LEU A2541 THR A2544 -1 O VAL A2542 N ILE A2506 SHEET 3 AA8 3 PHE A2533 VAL A2535 -1 N SER A2534 O THR A2543 LINK O ASN A2266 CA CA A2607 1555 1555 2.33 LINK OE1 GLU A2284 CA CA A2609 1555 1555 2.34 LINK OE2 GLU A2284 CA CA A2610 1555 1555 2.41 LINK OD1 ASP A2299 CA CA A2607 1555 1555 2.85 LINK OD2 ASP A2299 CA CA A2607 1555 1555 2.30 LINK OD2 ASP A2301 CA CA A2607 1555 1555 2.49 LINK O ASN A2305 CA CA A2607 1555 1555 2.42 LINK OD1 ASP A2338 CA CA A2610 1555 1555 2.35 LINK OE1 GLU A2340 CA CA A2609 1555 1555 2.54 LINK OE2 GLU A2340 CA CA A2609 1555 1555 2.60 LINK OE2 GLU A2340 CA CA A2610 1555 1555 2.27 LINK OD2 ASP A2353 CA CA A2607 1555 1555 2.48 LINK OD1 ASP A2371 CA CA A2609 1555 1555 2.24 LINK O ILE A2372 CA CA A2609 1555 1555 2.48 LINK OD1 ASN A2373 CA CA A2608 1555 1555 2.38 LINK OD1 ASP A2374 CA CA A2609 1555 1555 2.37 LINK OD1 ASP A2374 CA CA A2610 1555 1555 3.09 LINK OD2 ASP A2374 CA CA A2610 1555 1555 2.35 LINK O ASN A2375 CA CA A2608 1555 1555 2.30 LINK OE2 GLU A2390 CA CA A2605 1555 1555 2.31 LINK OE1 GLU A2390 CA CA A2606 1555 1555 2.36 LINK OD1 ASP A2405 CA CA A2608 1555 1555 2.59 LINK OD2 ASP A2405 CA CA A2608 1555 1555 2.41 LINK OD2 ASP A2407 CA CA A2608 1555 1555 2.38 LINK OD1 ASP A2407 CA CA A2609 1555 1555 2.31 LINK O PHE A2411 CA CA A2608 1555 1555 2.39 LINK OD1 ASP A2441 CA CA A2606 1555 1555 2.36 LINK OE1 GLU A2443 CA CA A2605 1555 1555 2.39 LINK OE2 GLU A2443 CA CA A2605 1555 1555 2.76 LINK OE2 GLU A2443 CA CA A2606 1555 1555 2.24 LINK OD2 ASP A2456 CA CA A2608 1555 1555 2.32 LINK OD1 ASP A2478 CA CA A2605 1555 1555 2.32 LINK O VAL A2479 CA CA A2605 1555 1555 2.39 LINK OD1 ASN A2480 CA CA A2604 1555 1555 2.33 LINK OD1 ASP A2481 CA CA A2605 1555 1555 2.36 LINK OD1 ASP A2481 CA CA A2606 1555 1555 3.02 LINK OD2 ASP A2481 CA CA A2606 1555 1555 2.40 LINK O CYS A2482 CA CA A2604 1555 1555 2.34 LINK OD1 ASP A2512 CA CA A2604 1555 1555 2.63 LINK OD2 ASP A2512 CA CA A2604 1555 1555 2.43 LINK OD2 ASP A2514 CA CA A2604 1555 1555 2.37 LINK OD1 ASP A2514 CA CA A2605 1555 1555 2.29 LINK O ASN A2518 CA CA A2604 1555 1555 2.33 LINK OD2 ASP A2562 CA CA A2604 1555 1555 2.35 LINK CA CA A2606 OE1 GSH A2611 1555 1555 2.36 LINK CA CA A2606 O HOH A2917 1555 1555 2.45 LINK CA CA A2607 O HOH A3007 1555 1555 2.41 LINK CA CA A2610 O HOH A2993 1555 1555 2.36 LINK CA CA A2610 O HOH A3004 1555 1555 2.45 CISPEP 1 LYS A 2271 PRO A 2272 0 -3.28 CISPEP 2 THR A 2316 PRO A 2317 0 -4.03 CISPEP 3 GLU A 2565 PRO A 2566 0 -4.63 SITE 1 AC1 2 ASN A2428 ASN A2430 SITE 1 AC2 3 PHE A2389 HOH A3149 HOH A3200 SITE 1 AC3 3 ASP A2446 HIS A2447 ARG A2475 SITE 1 AC4 6 ASN A2480 CYS A2482 ASP A2512 ASP A2514 SITE 2 AC4 6 ASN A2518 ASP A2562 SITE 1 AC5 6 GLU A2390 GLU A2443 ASP A2478 VAL A2479 SITE 2 AC5 6 ASP A2481 ASP A2514 SITE 1 AC6 6 GLU A2390 ASP A2441 GLU A2443 ASP A2481 SITE 2 AC6 6 GSH A2611 HOH A2917 SITE 1 AC7 6 ASN A2266 ASP A2299 ASP A2301 ASN A2305 SITE 2 AC7 6 ASP A2353 HOH A3007 SITE 1 AC8 6 ASN A2373 ASN A2375 ASP A2405 ASP A2407 SITE 2 AC8 6 PHE A2411 ASP A2456 SITE 1 AC9 6 GLU A2284 GLU A2340 ASP A2371 ILE A2372 SITE 2 AC9 6 ASP A2374 ASP A2407 SITE 1 AD1 6 GLU A2284 ASP A2338 GLU A2340 ASP A2374 SITE 2 AD1 6 HOH A2993 HOH A3004 SITE 1 AD2 15 ASP A2441 GLU A2443 LYS A2444 ASP A2481 SITE 2 AD2 15 CYS A2482 CA A2606 HOH A2710 HOH A2740 SITE 3 AD2 15 HOH A2745 HOH A2798 HOH A2839 HOH A2917 SITE 4 AD2 15 HOH A2945 HOH A2995 HOH A3018 CRYST1 89.537 57.208 114.667 90.00 112.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011169 0.000000 0.004638 0.00000 SCALE2 0.000000 0.017480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009443 0.00000