HEADER TRANSFERASE 26-FEB-17 5UZH TITLE CRYSTAL STRUCTURE OF A GDP-MANNOSE DEHYDRATASE FROM NAEGLERIA FOWLERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAFOA.00085.B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NAFOA.00085.B; COMPND 5 EC: 4.2.1.47; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA FOWLERI; SOURCE 3 ORGANISM_COMMON: BRAIN-EATING AMOEBA; SOURCE 4 ORGANISM_TAXID: 5763; SOURCE 5 STRAIN: ATCC 30863; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: NAFOA.00085.B.B1 KEYWDS SSGCID, NAEGLERIA FOWLERI, KINASE, NUCLOSIDE DIPHOSPHATE, POTENTIAL KEYWDS 2 DRUG TARGET, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SSGCID,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 2 04-OCT-23 5UZH 1 REMARK REVDAT 1 05-APR-17 5UZH 0 JRNL AUTH D.G.CONRADY,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A GDP-MANNOSE DEHYDRATASE FROM JRNL TITL 2 NAEGLERIA FOWLERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3748 - 5.4203 1.00 1408 174 0.1727 0.2304 REMARK 3 2 5.4203 - 4.3032 1.00 1325 157 0.1314 0.1593 REMARK 3 3 4.3032 - 3.7596 1.00 1335 128 0.1212 0.1699 REMARK 3 4 3.7596 - 3.4159 1.00 1275 176 0.1347 0.1707 REMARK 3 5 3.4159 - 3.1712 1.00 1300 132 0.1447 0.1895 REMARK 3 6 3.1712 - 2.9842 1.00 1300 137 0.1534 0.2253 REMARK 3 7 2.9842 - 2.8348 1.00 1295 134 0.1521 0.1959 REMARK 3 8 2.8348 - 2.7114 1.00 1287 139 0.1522 0.1924 REMARK 3 9 2.7114 - 2.6070 1.00 1296 127 0.1545 0.2354 REMARK 3 10 2.6070 - 2.5171 1.00 1252 165 0.1492 0.2257 REMARK 3 11 2.5171 - 2.4384 1.00 1261 145 0.1524 0.2382 REMARK 3 12 2.4384 - 2.3687 1.00 1291 114 0.1642 0.2361 REMARK 3 13 2.3687 - 2.3063 1.00 1279 126 0.1637 0.2633 REMARK 3 14 2.3063 - 2.2501 1.00 1270 150 0.1701 0.2419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2883 REMARK 3 ANGLE : 0.880 3926 REMARK 3 CHIRALITY : 0.052 436 REMARK 3 PLANARITY : 0.006 506 REMARK 3 DIHEDRAL : 8.826 2322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8423 -12.1600 -13.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2346 REMARK 3 T33: 0.2503 T12: 0.0279 REMARK 3 T13: -0.0587 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 4.4780 L22: 2.6601 REMARK 3 L33: 2.7647 L12: -0.3320 REMARK 3 L13: 0.1177 L23: -0.2384 REMARK 3 S TENSOR REMARK 3 S11: 0.1258 S12: 0.2466 S13: -0.5860 REMARK 3 S21: -0.3261 S22: 0.0265 S23: 0.1087 REMARK 3 S31: 0.3919 S32: 0.0260 S33: -0.1587 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8765 2.7120 -4.3559 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.2393 REMARK 3 T33: 0.2047 T12: 0.0242 REMARK 3 T13: -0.0076 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.2794 L22: 1.1773 REMARK 3 L33: 0.8107 L12: -0.0223 REMARK 3 L13: -0.1053 L23: -0.4187 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.1051 S13: -0.0264 REMARK 3 S21: -0.0159 S22: 0.0535 S23: 0.1009 REMARK 3 S31: 0.0310 S32: -0.0933 S33: -0.0560 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5731 -2.6104 14.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.3451 REMARK 3 T33: 0.3033 T12: 0.0390 REMARK 3 T13: 0.0635 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.1344 L22: 2.8123 REMARK 3 L33: 2.6940 L12: 2.4272 REMARK 3 L13: -1.5161 L23: -1.2953 REMARK 3 S TENSOR REMARK 3 S11: 0.3491 S12: -0.3470 S13: -0.0379 REMARK 3 S21: 0.4573 S22: -0.1692 S23: 0.3274 REMARK 3 S31: -0.1492 S32: -0.2582 S33: -0.1826 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0211 -4.6727 -4.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.3468 REMARK 3 T33: 0.2464 T12: -0.0257 REMARK 3 T13: -0.0468 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 4.5007 L22: 7.9599 REMARK 3 L33: 7.1265 L12: 2.4821 REMARK 3 L13: -1.5504 L23: -6.6190 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.1609 S13: -0.0867 REMARK 3 S21: -0.2239 S22: 0.4066 S23: 0.6614 REMARK 3 S31: 0.2575 S32: -0.6353 S33: -0.5047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.611 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.81 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1T2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS MORPHEUS F12: (0.02M REMARK 280 EACH D-GLUCOSE, D-MANNNOSE, D-GALACTOSE, L-FUCOSE, D-XYLOSE, N- REMARK 280 ACETYL-D-GLUCOSAMINE: 0.1 M TRIS (BASE)/BICINE PH 8.5, 12.5% MPD, REMARK 280 12.5% PEG1K, 12.5% PEG3350) MIXED 1:1 WITH 19.8 MG/ML PROTEIN REMARK 280 IN SITTING DROP VAPOR DIFFUSION. TRAY ID 283244F12, PUCK KJY4-9., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.36500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.33000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.36500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.33000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.36500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.33000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.36500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.33000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 MPD A 405 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 33 OG REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 ILE A 84 CG1 CG2 CD1 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLN A 276 CG CD OE1 NE2 REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 SER A 377 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 253 NH1 ARG A 291 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 120 94.69 -68.87 REMARK 500 SER A 220 171.71 173.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NAFOA.00085.B RELATED DB: TARGETTRACK DBREF 5UZH A 33 377 PDB 5UZH 5UZH 33 377 SEQRES 1 A 345 SER LYS VAL ALA LEU ILE THR GLY ILE THR GLY GLN ASP SEQRES 2 A 345 GLY SER TYR LEU ALA GLU PHE LEU LEU GLU LYS GLY TYR SEQRES 3 A 345 MET VAL TYR GLY ILE ILE ARG ARG SER SER SER PHE ASN SEQRES 4 A 345 THR GLY ARG VAL GLU HIS LEU TYR LYS ASP ILE HIS ILE SEQRES 5 A 345 THR LYS ALA LYS PHE LYS LEU LEU TYR GLY ASP LEU THR SEQRES 6 A 345 ASP THR GLY ASN LEU ILE SER ILE ILE ALA LYS ILE LYS SEQRES 7 A 345 PRO ASP GLU ILE TYR ASN LEU ALA ALA GLN SER HIS VAL SEQRES 8 A 345 LYS VAL SER PHE GLU MET PRO GLU TYR THR ALA ASN VAL SEQRES 9 A 345 ASP GLY ILE GLY THR LEU ARG LEU LEU GLU ALA ILE ARG SEQRES 10 A 345 ALA CYS GLY LEU GLU LYS LYS THR LYS PHE TYR GLN ALA SEQRES 11 A 345 SER THR SER GLU LEU TYR GLY LEU VAL GLN GLU VAL PRO SEQRES 12 A 345 GLN LYS GLU THR THR PRO PHE TYR PRO ARG SER PRO TYR SEQRES 13 A 345 ALA CYS ALA LYS LEU TYR SER TYR TRP ILE VAL VAL ASN SEQRES 14 A 345 TYR ARG GLU ALA TYR ASN MET PHE ALA LEU ASN GLY ILE SEQRES 15 A 345 LEU PHE ASN HIS GLU SER ILE ARG ARG GLY PRO THR PHE SEQRES 16 A 345 VAL THR ARG LYS ILE THR MET ALA VAL ALA ARG ILE LYS SEQRES 17 A 345 LEU GLY LEU GLN ASP CYS LEU TYR LEU GLY ASN LEU ASP SEQRES 18 A 345 ALA GLU ARG ASP TRP GLY HIS ALA LYS ASP TYR VAL GLU SEQRES 19 A 345 ALA MET TRP LEU MET LEU GLN GLN GLU GLN PRO ARG ASP SEQRES 20 A 345 PHE CYS VAL ALA THR GLY GLU LYS HIS SER VAL ARG GLU SEQRES 21 A 345 PHE VAL GLU LYS ALA PHE ALA CYS ILE GLY GLN THR VAL SEQRES 22 A 345 GLU TRP LYS GLY GLU ARG GLY THR VAL GLU GLU HIS GLY SEQRES 23 A 345 VAL VAL ASP GLY VAL VAL ARG VAL ARG VAL ASP PRO ARG SEQRES 24 A 345 TYR PHE ARG PRO THR GLU VAL ASP GLN LEU LEU GLY ASP SEQRES 25 A 345 PRO THR LEU ALA GLU THR VAL LEU GLY TRP LYS ARG LYS SEQRES 26 A 345 VAL SER PHE GLU GLU LEU VAL ARG GLY MET VAL GLU GLY SEQRES 27 A 345 ASP ILE GLU LEU LEU GLN SER HET GDP A 401 28 HET NAP A 402 48 HET MPD A 403 8 HET MPD A 404 8 HET MPD A 405 8 HET CL A 406 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 CL CL 1- FORMUL 8 HOH *158(H2 O) HELIX 1 AA1 GLY A 43 LYS A 56 1 14 HELIX 2 AA2 VAL A 75 LYS A 80 1 6 HELIX 3 AA3 ASP A 81 LYS A 86 1 6 HELIX 4 AA4 ASP A 98 LYS A 110 1 13 HELIX 5 AA5 HIS A 122 MET A 129 1 8 HELIX 6 AA6 MET A 129 GLY A 138 1 10 HELIX 7 AA7 GLY A 138 CYS A 151 1 14 HELIX 8 AA8 GLU A 166 GLY A 169 5 4 HELIX 9 AA9 SER A 186 ASN A 207 1 22 HELIX 10 AB1 PHE A 227 LEU A 241 1 15 HELIX 11 AB2 ALA A 261 GLN A 274 1 14 HELIX 12 AB3 VAL A 290 CYS A 300 1 11 HELIX 13 AB4 PRO A 330 PHE A 333 5 4 HELIX 14 AB5 PRO A 345 GLY A 353 1 9 HELIX 15 AB6 SER A 359 SER A 377 1 19 SHEET 1 AA1 7 PHE A 89 TYR A 93 0 SHEET 2 AA1 7 MET A 59 ILE A 64 1 N ILE A 64 O LEU A 92 SHEET 3 AA1 7 VAL A 35 THR A 39 1 N ALA A 36 O TYR A 61 SHEET 4 AA1 7 GLU A 113 ASN A 116 1 O GLU A 113 N LEU A 37 SHEET 5 AA1 7 LYS A 158 THR A 164 1 O LYS A 158 N ILE A 114 SHEET 6 AA1 7 ALA A 210 LEU A 215 1 O GLY A 213 N GLN A 161 SHEET 7 AA1 7 PHE A 280 VAL A 282 1 O PHE A 280 N ILE A 214 SHEET 1 AA2 2 HIS A 218 GLU A 219 0 SHEET 2 AA2 2 GLY A 259 HIS A 260 1 O GLY A 259 N GLU A 219 SHEET 1 AA3 4 LEU A 247 LEU A 249 0 SHEET 2 AA3 4 VAL A 323 VAL A 328 1 O ARG A 327 N LEU A 249 SHEET 3 AA3 4 HIS A 317 VAL A 320 -1 N GLY A 318 O ARG A 325 SHEET 4 AA3 4 GLU A 306 LYS A 308 -1 N GLU A 306 O VAL A 319 SHEET 1 AA4 2 GLU A 255 ARG A 256 0 SHEET 2 AA4 2 HIS A 288 SER A 289 -1 O HIS A 288 N ARG A 256 CISPEP 1 VAL A 174 PRO A 175 0 -5.36 SITE 1 AC1 22 VAL A 123 GLU A 166 ASN A 217 THR A 226 SITE 2 AC1 22 PHE A 227 VAL A 228 LYS A 231 LEU A 249 SITE 3 AC1 22 GLY A 250 ASN A 251 ALA A 254 ARG A 256 SITE 4 AC1 22 VAL A 290 TYR A 332 ARG A 334 GLU A 337 SITE 5 AC1 22 HOH A 506 HOH A 522 HOH A 545 HOH A 557 SITE 6 AC1 22 HOH A 584 HOH A 598 SITE 1 AC2 40 GLY A 40 THR A 42 GLY A 43 GLN A 44 SITE 2 AC2 40 ASP A 45 ARG A 65 ARG A 66 SER A 67 SITE 3 AC2 40 SER A 68 ASN A 71 ASP A 95 LEU A 96 SITE 4 AC2 40 LEU A 117 ALA A 118 ALA A 119 SER A 121 SITE 5 AC2 40 TYR A 132 VAL A 136 ALA A 162 SER A 163 SITE 6 AC2 40 THR A 164 TYR A 188 LYS A 192 LEU A 215 SITE 7 AC2 40 ASN A 217 HIS A 218 ARG A 223 HOH A 502 SITE 8 AC2 40 HOH A 504 HOH A 509 HOH A 537 HOH A 539 SITE 9 AC2 40 HOH A 555 HOH A 566 HOH A 567 HOH A 569 SITE 10 AC2 40 HOH A 586 HOH A 601 HOH A 604 HOH A 628 SITE 1 AC3 7 GLU A 178 THR A 179 TYR A 183 TYR A 196 SITE 2 AC3 7 HOH A 532 HOH A 578 HOH A 589 SITE 1 AC4 7 GLU A 178 THR A 179 THR A 180 PRO A 181 SITE 2 AC4 7 PHE A 182 TYR A 196 HOH A 609 SITE 1 AC5 2 ALA A 150 CYS A 151 SITE 1 AC6 1 LEU A 91 CRYST1 92.730 92.730 94.660 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010564 0.00000