HEADER TRANSFERASE 27-FEB-17 5UZR TITLE CRYSTAL STRUCTURE OF CITRATE SYNTHASE FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 28-466; COMPND 5 SYNONYM: CITRATE (SI)-SYNTHASE; COMPND 6 EC: 2.3.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHLACHTER,M.CHRUSZCZ REVDAT 3 06-MAR-24 5UZR 1 REMARK REVDAT 2 17-JUN-20 5UZR 1 JRNL REVDAT 1 07-MAR-18 5UZR 0 JRNL AUTH C.R.SCHLACHTER,V.KLAPPER,T.RADFORD,M.CHRUSZCZ JRNL TITL COMPARATIVE STUDIES OF ASPERGILLUS FUMIGATUS 2-METHYLCITRATE JRNL TITL 2 SYNTHASE AND HUMAN CITRATE SYNTHASE. JRNL REF BIOL.CHEM. V. 400 1567 2019 JRNL REFN ISSN 1431-6730 JRNL PMID 31141475 JRNL DOI 10.1515/HSZ-2019-0106 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 35831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1894 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2556 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.92000 REMARK 3 B23 (A**2) : -0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.417 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7026 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6506 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9537 ; 1.610 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15106 ; 1.039 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 869 ; 5.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;39.620 ;23.961 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1196 ;14.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1048 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7782 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1424 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3476 ; 1.208 ; 2.111 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3475 ; 1.205 ; 2.110 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4342 ; 2.069 ; 3.161 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4343 ; 2.070 ; 3.162 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3550 ; 1.507 ; 2.304 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3551 ; 1.506 ; 2.305 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5195 ; 2.558 ; 3.362 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8102 ; 3.939 ;24.609 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8050 ; 3.897 ;24.486 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 30 462 D 30 462 28264 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6519 -3.5593 1.0669 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0028 REMARK 3 T33: 0.0207 T12: -0.0037 REMARK 3 T13: 0.0057 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4398 L22: 0.4902 REMARK 3 L33: 0.4010 L12: -0.0028 REMARK 3 L13: -0.0134 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0015 S13: 0.0511 REMARK 3 S21: -0.0695 S22: 0.0098 S23: -0.0654 REMARK 3 S31: -0.0377 S32: 0.0333 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 324 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4962 6.2670 5.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0100 REMARK 3 T33: 0.0357 T12: 0.0013 REMARK 3 T13: -0.0031 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: 0.6543 REMARK 3 L33: 0.4283 L12: -0.0833 REMARK 3 L13: 0.0074 L23: -0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0149 S13: 0.0830 REMARK 3 S21: -0.0025 S22: 0.0266 S23: 0.0010 REMARK 3 S31: -0.0304 S32: -0.0514 S33: -0.0213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 30 D 249 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5400 -26.9854 8.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.0077 T22: 0.0099 REMARK 3 T33: 0.0282 T12: -0.0086 REMARK 3 T13: 0.0005 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4654 L22: 0.4749 REMARK 3 L33: 0.6579 L12: -0.0190 REMARK 3 L13: 0.0456 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.0042 S13: -0.0336 REMARK 3 S21: -0.0133 S22: 0.0073 S23: 0.0773 REMARK 3 S31: 0.0575 S32: -0.0708 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 250 D 464 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2441 -32.9886 15.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.0301 REMARK 3 T33: 0.0212 T12: 0.0161 REMARK 3 T13: -0.0059 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1616 L22: 0.7384 REMARK 3 L33: 0.2243 L12: -0.0992 REMARK 3 L13: -0.1762 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.0624 S13: -0.0087 REMARK 3 S21: 0.0581 S22: 0.0347 S23: -0.0265 REMARK 3 S31: 0.0223 S32: 0.0719 S33: 0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE PH 7.1, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 GLU A 20 REMARK 465 ASN A 21 REMARK 465 LEU A 22 REMARK 465 TYR A 23 REMARK 465 PHE A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 LYS A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 MET D 5 REMARK 465 HIS D 6 REMARK 465 HIS D 7 REMARK 465 HIS D 8 REMARK 465 HIS D 9 REMARK 465 HIS D 10 REMARK 465 HIS D 11 REMARK 465 SER D 12 REMARK 465 SER D 13 REMARK 465 GLY D 14 REMARK 465 VAL D 15 REMARK 465 ASP D 16 REMARK 465 LEU D 17 REMARK 465 GLY D 18 REMARK 465 THR D 19 REMARK 465 GLU D 20 REMARK 465 ASN D 21 REMARK 465 LEU D 22 REMARK 465 TYR D 23 REMARK 465 PHE D 24 REMARK 465 GLN D 25 REMARK 465 SER D 26 REMARK 465 ASN D 27 REMARK 465 ALA D 28 REMARK 465 SER D 29 REMARK 465 SER D 465 REMARK 465 GLY D 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 215 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 354 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP D 354 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 247 56.42 -143.66 REMARK 500 HIS A 265 64.60 -152.82 REMARK 500 GLU A 266 -178.69 67.37 REMARK 500 HIS A 301 -50.56 -128.77 REMARK 500 LEU A 368 52.09 -146.03 REMARK 500 LYS A 393 -69.08 -93.23 REMARK 500 HIS D 265 64.49 -152.95 REMARK 500 GLU D 266 179.97 67.20 REMARK 500 HIS D 301 -50.81 -126.02 REMARK 500 LEU D 368 51.03 -141.72 REMARK 500 LYS D 393 -70.34 -93.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 501 DBREF 5UZR A 28 466 UNP O75390 CISY_HUMAN 28 466 DBREF 5UZR D 28 466 UNP O75390 CISY_HUMAN 28 466 SEQADV 5UZR MET A 5 UNP O75390 INITIATING METHIONINE SEQADV 5UZR HIS A 6 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS A 7 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS A 8 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS A 9 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS A 10 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS A 11 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER A 12 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER A 13 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLY A 14 UNP O75390 EXPRESSION TAG SEQADV 5UZR VAL A 15 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASP A 16 UNP O75390 EXPRESSION TAG SEQADV 5UZR LEU A 17 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLY A 18 UNP O75390 EXPRESSION TAG SEQADV 5UZR THR A 19 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLU A 20 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASN A 21 UNP O75390 EXPRESSION TAG SEQADV 5UZR LEU A 22 UNP O75390 EXPRESSION TAG SEQADV 5UZR TYR A 23 UNP O75390 EXPRESSION TAG SEQADV 5UZR PHE A 24 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLN A 25 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER A 26 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASN A 27 UNP O75390 EXPRESSION TAG SEQADV 5UZR MET D 5 UNP O75390 INITIATING METHIONINE SEQADV 5UZR HIS D 6 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS D 7 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS D 8 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS D 9 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS D 10 UNP O75390 EXPRESSION TAG SEQADV 5UZR HIS D 11 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER D 12 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER D 13 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLY D 14 UNP O75390 EXPRESSION TAG SEQADV 5UZR VAL D 15 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASP D 16 UNP O75390 EXPRESSION TAG SEQADV 5UZR LEU D 17 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLY D 18 UNP O75390 EXPRESSION TAG SEQADV 5UZR THR D 19 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLU D 20 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASN D 21 UNP O75390 EXPRESSION TAG SEQADV 5UZR LEU D 22 UNP O75390 EXPRESSION TAG SEQADV 5UZR TYR D 23 UNP O75390 EXPRESSION TAG SEQADV 5UZR PHE D 24 UNP O75390 EXPRESSION TAG SEQADV 5UZR GLN D 25 UNP O75390 EXPRESSION TAG SEQADV 5UZR SER D 26 UNP O75390 EXPRESSION TAG SEQADV 5UZR ASN D 27 UNP O75390 EXPRESSION TAG SEQRES 1 A 462 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 462 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA SER SER SEQRES 3 A 462 THR ASN LEU LYS ASP ILE LEU ALA ASP LEU ILE PRO LYS SEQRES 4 A 462 GLU GLN ALA ARG ILE LYS THR PHE ARG GLN GLN HIS GLY SEQRES 5 A 462 LYS THR VAL VAL GLY GLN ILE THR VAL ASP MET MET TYR SEQRES 6 A 462 GLY GLY MET ARG GLY MET LYS GLY LEU VAL TYR GLU THR SEQRES 7 A 462 SER VAL LEU ASP PRO ASP GLU GLY ILE ARG PHE ARG GLY SEQRES 8 A 462 PHE SER ILE PRO GLU CYS GLN LYS LEU LEU PRO LYS ALA SEQRES 9 A 462 LYS GLY GLY GLU GLU PRO LEU PRO GLU GLY LEU PHE TRP SEQRES 10 A 462 LEU LEU VAL THR GLY HIS ILE PRO THR GLU GLU GLN VAL SEQRES 11 A 462 SER TRP LEU SER LYS GLU TRP ALA LYS ARG ALA ALA LEU SEQRES 12 A 462 PRO SER HIS VAL VAL THR MET LEU ASP ASN PHE PRO THR SEQRES 13 A 462 ASN LEU HIS PRO MET SER GLN LEU SER ALA ALA VAL THR SEQRES 14 A 462 ALA LEU ASN SER GLU SER ASN PHE ALA ARG ALA TYR ALA SEQRES 15 A 462 GLN GLY ILE SER ARG THR LYS TYR TRP GLU LEU ILE TYR SEQRES 16 A 462 GLU ASP SER MET ASP LEU ILE ALA LYS LEU PRO CYS VAL SEQRES 17 A 462 ALA ALA LYS ILE TYR ARG ASN LEU TYR ARG GLU GLY SER SEQRES 18 A 462 GLY ILE GLY ALA ILE ASP SER ASN LEU ASP TRP SER HIS SEQRES 19 A 462 ASN PHE THR ASN MET LEU GLY TYR THR ASP HIS GLN PHE SEQRES 20 A 462 THR GLU LEU THR ARG LEU TYR LEU THR ILE HIS SER ASP SEQRES 21 A 462 HIS GLU GLY GLY ASN VAL SER ALA HIS THR SER HIS LEU SEQRES 22 A 462 VAL GLY SER ALA LEU SER ASP PRO TYR LEU SER PHE ALA SEQRES 23 A 462 ALA ALA MET ASN GLY LEU ALA GLY PRO LEU HIS GLY LEU SEQRES 24 A 462 ALA ASN GLN GLU VAL LEU VAL TRP LEU THR GLN LEU GLN SEQRES 25 A 462 LYS GLU VAL GLY LYS ASP VAL SER ASP GLU LYS LEU ARG SEQRES 26 A 462 ASP TYR ILE TRP ASN THR LEU ASN SER GLY ARG VAL VAL SEQRES 27 A 462 PRO GLY TYR GLY HIS ALA VAL LEU ARG LYS THR ASP PRO SEQRES 28 A 462 ARG TYR THR CYS GLN ARG GLU PHE ALA LEU LYS HIS LEU SEQRES 29 A 462 PRO ASN ASP PRO MET PHE LYS LEU VAL ALA GLN LEU TYR SEQRES 30 A 462 LYS ILE VAL PRO ASN VAL LEU LEU GLU GLN GLY LYS ALA SEQRES 31 A 462 LYS ASN PRO TRP PRO ASN VAL ASP ALA HIS SER GLY VAL SEQRES 32 A 462 LEU LEU GLN TYR TYR GLY MET THR GLU MET ASN TYR TYR SEQRES 33 A 462 THR VAL LEU PHE GLY VAL SER ARG ALA LEU GLY VAL LEU SEQRES 34 A 462 ALA GLN LEU ILE TRP SER ARG ALA LEU GLY PHE PRO LEU SEQRES 35 A 462 GLU ARG PRO LYS SER MET SER THR GLU GLY LEU MET LYS SEQRES 36 A 462 PHE VAL ASP SER LYS SER GLY SEQRES 1 D 462 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 462 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA SER SER SEQRES 3 D 462 THR ASN LEU LYS ASP ILE LEU ALA ASP LEU ILE PRO LYS SEQRES 4 D 462 GLU GLN ALA ARG ILE LYS THR PHE ARG GLN GLN HIS GLY SEQRES 5 D 462 LYS THR VAL VAL GLY GLN ILE THR VAL ASP MET MET TYR SEQRES 6 D 462 GLY GLY MET ARG GLY MET LYS GLY LEU VAL TYR GLU THR SEQRES 7 D 462 SER VAL LEU ASP PRO ASP GLU GLY ILE ARG PHE ARG GLY SEQRES 8 D 462 PHE SER ILE PRO GLU CYS GLN LYS LEU LEU PRO LYS ALA SEQRES 9 D 462 LYS GLY GLY GLU GLU PRO LEU PRO GLU GLY LEU PHE TRP SEQRES 10 D 462 LEU LEU VAL THR GLY HIS ILE PRO THR GLU GLU GLN VAL SEQRES 11 D 462 SER TRP LEU SER LYS GLU TRP ALA LYS ARG ALA ALA LEU SEQRES 12 D 462 PRO SER HIS VAL VAL THR MET LEU ASP ASN PHE PRO THR SEQRES 13 D 462 ASN LEU HIS PRO MET SER GLN LEU SER ALA ALA VAL THR SEQRES 14 D 462 ALA LEU ASN SER GLU SER ASN PHE ALA ARG ALA TYR ALA SEQRES 15 D 462 GLN GLY ILE SER ARG THR LYS TYR TRP GLU LEU ILE TYR SEQRES 16 D 462 GLU ASP SER MET ASP LEU ILE ALA LYS LEU PRO CYS VAL SEQRES 17 D 462 ALA ALA LYS ILE TYR ARG ASN LEU TYR ARG GLU GLY SER SEQRES 18 D 462 GLY ILE GLY ALA ILE ASP SER ASN LEU ASP TRP SER HIS SEQRES 19 D 462 ASN PHE THR ASN MET LEU GLY TYR THR ASP HIS GLN PHE SEQRES 20 D 462 THR GLU LEU THR ARG LEU TYR LEU THR ILE HIS SER ASP SEQRES 21 D 462 HIS GLU GLY GLY ASN VAL SER ALA HIS THR SER HIS LEU SEQRES 22 D 462 VAL GLY SER ALA LEU SER ASP PRO TYR LEU SER PHE ALA SEQRES 23 D 462 ALA ALA MET ASN GLY LEU ALA GLY PRO LEU HIS GLY LEU SEQRES 24 D 462 ALA ASN GLN GLU VAL LEU VAL TRP LEU THR GLN LEU GLN SEQRES 25 D 462 LYS GLU VAL GLY LYS ASP VAL SER ASP GLU LYS LEU ARG SEQRES 26 D 462 ASP TYR ILE TRP ASN THR LEU ASN SER GLY ARG VAL VAL SEQRES 27 D 462 PRO GLY TYR GLY HIS ALA VAL LEU ARG LYS THR ASP PRO SEQRES 28 D 462 ARG TYR THR CYS GLN ARG GLU PHE ALA LEU LYS HIS LEU SEQRES 29 D 462 PRO ASN ASP PRO MET PHE LYS LEU VAL ALA GLN LEU TYR SEQRES 30 D 462 LYS ILE VAL PRO ASN VAL LEU LEU GLU GLN GLY LYS ALA SEQRES 31 D 462 LYS ASN PRO TRP PRO ASN VAL ASP ALA HIS SER GLY VAL SEQRES 32 D 462 LEU LEU GLN TYR TYR GLY MET THR GLU MET ASN TYR TYR SEQRES 33 D 462 THR VAL LEU PHE GLY VAL SER ARG ALA LEU GLY VAL LEU SEQRES 34 D 462 ALA GLN LEU ILE TRP SER ARG ALA LEU GLY PHE PRO LEU SEQRES 35 D 462 GLU ARG PRO LYS SER MET SER THR GLU GLY LEU MET LYS SEQRES 36 D 462 PHE VAL ASP SER LYS SER GLY HET CL A 501 1 HET CL D 501 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *400(H2 O) HELIX 1 AA1 ASN A 32 GLY A 56 1 25 HELIX 2 AA2 VAL A 65 GLY A 70 1 6 HELIX 3 AA3 ILE A 98 LEU A 105 1 8 HELIX 4 AA4 LEU A 115 GLY A 126 1 12 HELIX 5 AA5 THR A 130 ARG A 144 1 15 HELIX 6 AA6 PRO A 148 PHE A 158 1 11 HELIX 7 AA7 HIS A 163 LEU A 175 1 13 HELIX 8 AA8 ASN A 176 GLU A 178 5 3 HELIX 9 AA9 SER A 179 GLN A 187 1 9 HELIX 10 AB1 SER A 190 THR A 192 5 3 HELIX 11 AB2 LYS A 193 ARG A 222 1 30 HELIX 12 AB3 ASP A 235 GLY A 245 1 11 HELIX 13 AB4 ASP A 248 HIS A 262 1 15 HELIX 14 AB5 ASN A 269 SER A 280 1 12 HELIX 15 AB6 ASP A 284 ALA A 297 1 14 HELIX 16 AB7 GLY A 298 LEU A 303 1 6 HELIX 17 AB8 LEU A 303 GLY A 320 1 18 HELIX 18 AB9 SER A 324 SER A 338 1 15 HELIX 19 AC1 ASP A 354 LEU A 368 1 15 HELIX 20 AC2 ASP A 371 GLY A 392 1 22 HELIX 21 AC3 ASN A 400 ALA A 403 5 4 HELIX 22 AC4 HIS A 404 TYR A 412 1 9 HELIX 23 AC5 GLU A 416 ASN A 418 5 3 HELIX 24 AC6 TYR A 419 LEU A 442 1 24 HELIX 25 AC7 SER A 453 SER A 463 1 11 HELIX 26 AC8 ASN D 32 GLY D 56 1 25 HELIX 27 AC9 VAL D 65 GLY D 70 1 6 HELIX 28 AD1 ILE D 98 LEU D 105 1 8 HELIX 29 AD2 LEU D 115 GLY D 126 1 12 HELIX 30 AD3 THR D 130 ARG D 144 1 15 HELIX 31 AD4 PRO D 148 PHE D 158 1 11 HELIX 32 AD5 HIS D 163 LEU D 175 1 13 HELIX 33 AD6 ASN D 176 GLU D 178 5 3 HELIX 34 AD7 SER D 179 GLN D 187 1 9 HELIX 35 AD8 SER D 190 THR D 192 5 3 HELIX 36 AD9 LYS D 193 ARG D 222 1 30 HELIX 37 AE1 ASP D 235 GLY D 245 1 11 HELIX 38 AE2 ASP D 248 HIS D 262 1 15 HELIX 39 AE3 ASN D 269 SER D 280 1 12 HELIX 40 AE4 ASP D 284 ALA D 297 1 14 HELIX 41 AE5 GLY D 298 LEU D 303 1 6 HELIX 42 AE6 LEU D 303 GLY D 320 1 18 HELIX 43 AE7 SER D 324 SER D 338 1 15 HELIX 44 AE8 ASP D 354 LEU D 368 1 15 HELIX 45 AE9 ASP D 371 GLY D 392 1 22 HELIX 46 AF1 VAL D 401 ALA D 403 5 3 HELIX 47 AF2 HIS D 404 TYR D 412 1 9 HELIX 48 AF3 GLU D 416 ASN D 418 5 3 HELIX 49 AF4 TYR D 419 LEU D 442 1 24 HELIX 50 AF5 SER D 453 SER D 463 1 11 SHEET 1 AA1 2 VAL A 59 THR A 64 0 SHEET 2 AA1 2 VAL D 59 THR D 64 -1 O ILE D 63 N VAL A 60 SHEET 1 AA2 2 LYS A 76 VAL A 79 0 SHEET 2 AA2 2 LYS D 450 MET D 452 1 O LYS D 450 N GLY A 77 SHEET 1 AA3 3 SER A 83 ASP A 86 0 SHEET 2 AA3 3 GLY A 90 PHE A 93 -1 O GLY A 90 N ASP A 86 SHEET 3 AA3 3 PHE A 96 SER A 97 -1 O PHE A 96 N PHE A 93 SHEET 1 AA4 2 LYS A 450 MET A 452 0 SHEET 2 AA4 2 LYS D 76 VAL D 79 1 O LEU D 78 N MET A 452 SHEET 1 AA5 3 SER D 83 ASP D 86 0 SHEET 2 AA5 3 GLY D 90 PHE D 93 -1 O GLY D 90 N ASP D 86 SHEET 3 AA5 3 PHE D 96 SER D 97 -1 O PHE D 96 N PHE D 93 SHEET 1 AA6 2 TYR D 345 HIS D 347 0 SHEET 2 AA6 2 ASN D 396 PRO D 399 -1 O TRP D 398 N GLY D 346 SITE 1 AC1 2 ARG A 428 HOH A 764 SITE 1 AC2 3 ARG D 428 HOH D 734 HOH D 740 CRYST1 58.177 74.676 60.652 62.78 93.85 80.30 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017189 -0.002938 0.002909 0.00000 SCALE2 0.000000 0.013585 -0.007365 0.00000 SCALE3 0.000000 0.000000 0.018797 0.00000