HEADER OXIDOREDUCTASE 27-FEB-17 5UZX TITLE CRYSTAL STRUCTURE OF PUTATIVE SHORT-CHAIN DEHYDROGENASE/REDUCTASE FROM TITLE 2 BURKHOLDERIA MULTIVORANS WITH BOUND NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SHORT-CHAIN ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BUMUA.00010.Z.B1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 GENE: BMULJ_04988; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DEHYDROGENASE/REDUCTASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5UZX 1 REMARK REVDAT 1 15-MAR-17 5UZX 0 JRNL AUTH S.L.DELKER,S.J.MAYCLIN,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE SHORT-CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FROM BURKHOLDERIA MULTIVORANS WITH JRNL TITL 3 BOUND NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2666 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 67939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2131 - 3.6144 0.99 4792 143 0.1532 0.1557 REMARK 3 2 3.6144 - 2.8690 0.99 4700 170 0.1575 0.2268 REMARK 3 3 2.8690 - 2.5064 0.99 4765 128 0.1646 0.2048 REMARK 3 4 2.5064 - 2.2773 0.99 4724 127 0.1612 0.2075 REMARK 3 5 2.2773 - 2.1140 1.00 4683 178 0.1635 0.1907 REMARK 3 6 2.1140 - 1.9894 1.00 4732 139 0.1646 0.2141 REMARK 3 7 1.9894 - 1.8898 1.00 4745 135 0.1698 0.2052 REMARK 3 8 1.8898 - 1.8075 1.00 4765 125 0.1703 0.1987 REMARK 3 9 1.8075 - 1.7379 1.00 4726 113 0.1722 0.2087 REMARK 3 10 1.7379 - 1.6779 1.00 4703 150 0.1818 0.2495 REMARK 3 11 1.6779 - 1.6255 1.00 4757 124 0.1860 0.2286 REMARK 3 12 1.6255 - 1.5790 1.00 4761 124 0.1898 0.2052 REMARK 3 13 1.5790 - 1.5374 0.99 4648 146 0.2129 0.2401 REMARK 3 14 1.5374 - 1.4999 0.95 4490 146 0.2357 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3780 REMARK 3 ANGLE : 0.866 5149 REMARK 3 CHIRALITY : 0.076 591 REMARK 3 PLANARITY : 0.006 703 REMARK 3 DIHEDRAL : 19.366 1464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6419 4.2954 16.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.1738 REMARK 3 T33: 0.1207 T12: 0.0329 REMARK 3 T13: -0.0159 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.5975 L22: 3.8309 REMARK 3 L33: 1.2971 L12: 1.4551 REMARK 3 L13: -0.1538 L23: -0.9559 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.2298 S13: 0.1757 REMARK 3 S21: -0.1775 S22: 0.0502 S23: 0.1717 REMARK 3 S31: -0.1456 S32: -0.1277 S33: -0.0576 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5950 -1.7659 30.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1414 REMARK 3 T33: 0.1540 T12: 0.0033 REMARK 3 T13: 0.0006 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.0377 L22: 0.4764 REMARK 3 L33: 3.7079 L12: -0.2163 REMARK 3 L13: -0.7117 L23: 0.5500 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.0841 S13: -0.0492 REMARK 3 S21: -0.0557 S22: -0.0405 S23: -0.0042 REMARK 3 S31: -0.0616 S32: -0.1960 S33: 0.0155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9516 2.1416 31.2192 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1556 REMARK 3 T33: 0.1658 T12: -0.0095 REMARK 3 T13: 0.0106 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1166 L22: 0.4385 REMARK 3 L33: 3.1360 L12: 0.2081 REMARK 3 L13: -0.2294 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0729 S13: 0.1785 REMARK 3 S21: -0.0934 S22: -0.0372 S23: -0.0630 REMARK 3 S31: -0.2824 S32: 0.1737 S33: -0.0214 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9278 -13.8403 6.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1697 REMARK 3 T33: 0.0834 T12: 0.0319 REMARK 3 T13: 0.0084 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.4729 L22: 4.8869 REMARK 3 L33: 3.7466 L12: 0.8988 REMARK 3 L13: 0.7049 L23: 0.5979 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.3245 S13: -0.1984 REMARK 3 S21: 0.2429 S22: 0.0519 S23: -0.1111 REMARK 3 S31: 0.1124 S32: 0.0478 S33: -0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6681 -11.9821 4.9123 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.1741 REMARK 3 T33: 0.1250 T12: -0.0254 REMARK 3 T13: 0.0209 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.6989 L22: 7.7929 REMARK 3 L33: 4.3591 L12: -1.9982 REMARK 3 L13: 0.1391 L23: -2.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.1294 S13: -0.1811 REMARK 3 S21: 0.2027 S22: 0.1924 S23: 0.2740 REMARK 3 S31: 0.1613 S32: -0.2269 S33: -0.1221 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2470 -6.7811 -11.0374 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1315 REMARK 3 T33: 0.1334 T12: 0.0024 REMARK 3 T13: 0.0016 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7100 L22: 0.9865 REMARK 3 L33: 2.4204 L12: -0.0140 REMARK 3 L13: -0.0399 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.0233 S13: 0.0271 REMARK 3 S21: 0.0444 S22: 0.0367 S23: -0.0366 REMARK 3 S31: 0.1525 S32: -0.0086 S33: -0.0127 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0916 -11.9107 -4.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1963 REMARK 3 T33: 0.1609 T12: 0.0372 REMARK 3 T13: -0.0108 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.5139 L22: 3.5382 REMARK 3 L33: 2.7554 L12: -0.7844 REMARK 3 L13: -0.7141 L23: -0.4414 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: -0.0292 S13: -0.0878 REMARK 3 S21: 0.0267 S22: 0.0309 S23: -0.1539 REMARK 3 S31: 0.3697 S32: 0.1820 S33: 0.0639 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.195 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.071 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.29 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5TT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG-1 F10(287571F10): 0.1 M TRIS HCL, REMARK 280 PH 8.5, 2 M AMMONIUM SULFATE, CRYO: 25% ETHYLENE GLYCOL +5MM REMARK 280 NADP: BUMUA.00010.Z.B1.PS37887AT 20 MG/ML, PUCK WDQ6-5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.07500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -22.24506 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 61.58561 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 142 -136.62 -100.15 REMARK 500 GLN A 155 162.80 68.88 REMARK 500 ALA B 118 -58.24 -120.33 REMARK 500 SER B 142 -135.35 -97.61 REMARK 500 GLN B 155 160.87 72.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUMUA.00010.Z RELATED DB: TARGETTRACK DBREF1 5UZX A 1 237 UNP A0A0H3KNM5_BURM1 DBREF2 5UZX A A0A0H3KNM5 1 237 DBREF1 5UZX B 1 237 UNP A0A0H3KNM5_BURM1 DBREF2 5UZX B A0A0H3KNM5 1 237 SEQADV 5UZX MET A -7 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX ALA A -6 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A -5 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A -4 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A -3 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A -2 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A -1 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS A 0 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX MET B -7 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX ALA B -6 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B -5 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B -4 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B -3 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B -2 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B -1 UNP A0A0H3KNM EXPRESSION TAG SEQADV 5UZX HIS B 0 UNP A0A0H3KNM EXPRESSION TAG SEQRES 1 A 245 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ASP THR SER SEQRES 2 A 245 ASP PRO ARG PRO THR ILE LEU LEU VAL GLY ALA SER ARG SEQRES 3 A 245 GLY LEU GLY HIS ALA MET ALA ALA GLU PHE LEU LYS ARG SEQRES 4 A 245 GLY TRP ASP VAL VAL GLY THR VAL ARG ALA ASP ARG GLY SEQRES 5 A 245 ARG THR PRO LEU HIS ALA LEU ALA GLU ALA TYR PRO ASP SEQRES 6 A 245 ARG LEU ARG ILE GLU THR LEU ASP ILE THR GLN PRO GLU SEQRES 7 A 245 GLN ILE ARG ALA LEU ALA ALA ARG LEU SER GLY ARG VAL SEQRES 8 A 245 PHE ASP ILE LEU PHE VAL ASN ALA GLY THR THR ASN PRO SEQRES 9 A 245 ASP PRO THR GLN THR ILE GLY GLU VAL SER THR ASP ASP SEQRES 10 A 245 PHE VAL ASP LEU MET ILE THR ASN ALA LEU SER PRO MET SEQRES 11 A 245 ARG VAL VAL GLU THR LEU ALA GLY LEU VAL PRO ARG ASP SEQRES 12 A 245 GLY LEU ILE GLY ILE MET SER SER GLY GLN GLY SER ILE SEQRES 13 A 245 ALA ASP ASN GLU SER GLY GLN ARG GLU LEU TYR ARG GLY SEQRES 14 A 245 SER LYS ALA ALA LEU ASN GLN PHE MET ARG SER PHE ALA SEQRES 15 A 245 ALA ARG HIS ALA GLN THR PRO LEU ALA MET VAL LEU ILE SEQRES 16 A 245 ALA PRO GLY TRP VAL ARG THR GLU LEU GLY GLY PRO ASP SEQRES 17 A 245 ALA ARG LEU SER ILE ASP GLU SER VAL PRO GLY VAL VAL SEQRES 18 A 245 ASP VAL LEU LEU ALA LYS ARG GLY ARG ALA GLY LEU GLU SEQRES 19 A 245 TYR LEU ASP TYR ARG GLY ARG THR VAL ARG TRP SEQRES 1 B 245 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ASP THR SER SEQRES 2 B 245 ASP PRO ARG PRO THR ILE LEU LEU VAL GLY ALA SER ARG SEQRES 3 B 245 GLY LEU GLY HIS ALA MET ALA ALA GLU PHE LEU LYS ARG SEQRES 4 B 245 GLY TRP ASP VAL VAL GLY THR VAL ARG ALA ASP ARG GLY SEQRES 5 B 245 ARG THR PRO LEU HIS ALA LEU ALA GLU ALA TYR PRO ASP SEQRES 6 B 245 ARG LEU ARG ILE GLU THR LEU ASP ILE THR GLN PRO GLU SEQRES 7 B 245 GLN ILE ARG ALA LEU ALA ALA ARG LEU SER GLY ARG VAL SEQRES 8 B 245 PHE ASP ILE LEU PHE VAL ASN ALA GLY THR THR ASN PRO SEQRES 9 B 245 ASP PRO THR GLN THR ILE GLY GLU VAL SER THR ASP ASP SEQRES 10 B 245 PHE VAL ASP LEU MET ILE THR ASN ALA LEU SER PRO MET SEQRES 11 B 245 ARG VAL VAL GLU THR LEU ALA GLY LEU VAL PRO ARG ASP SEQRES 12 B 245 GLY LEU ILE GLY ILE MET SER SER GLY GLN GLY SER ILE SEQRES 13 B 245 ALA ASP ASN GLU SER GLY GLN ARG GLU LEU TYR ARG GLY SEQRES 14 B 245 SER LYS ALA ALA LEU ASN GLN PHE MET ARG SER PHE ALA SEQRES 15 B 245 ALA ARG HIS ALA GLN THR PRO LEU ALA MET VAL LEU ILE SEQRES 16 B 245 ALA PRO GLY TRP VAL ARG THR GLU LEU GLY GLY PRO ASP SEQRES 17 B 245 ALA ARG LEU SER ILE ASP GLU SER VAL PRO GLY VAL VAL SEQRES 18 B 245 ASP VAL LEU LEU ALA LYS ARG GLY ARG ALA GLY LEU GLU SEQRES 19 B 245 TYR LEU ASP TYR ARG GLY ARG THR VAL ARG TRP HET NAP A 301 48 HET CL A 302 1 HET CL A 303 1 HET EDO A 304 8 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET SO4 A 310 5 HET NAP B 301 48 HET CL B 302 1 HET CL B 303 1 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 8 HET EDO B 308 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 CL 4(CL 1-) FORMUL 6 EDO 11(C2 H6 O2) FORMUL 12 SO4 O4 S 2- FORMUL 21 HOH *448(H2 O) HELIX 1 AA1 ARG A 18 ARG A 31 1 14 HELIX 2 AA2 ARG A 40 GLY A 44 5 5 HELIX 3 AA3 THR A 46 TYR A 55 1 10 HELIX 4 AA4 GLN A 68 LEU A 79 1 12 HELIX 5 AA5 SER A 106 ALA A 118 1 13 HELIX 6 AA6 ALA A 118 ALA A 129 1 12 HELIX 7 AA7 GLY A 130 VAL A 132 5 3 HELIX 8 AA8 SER A 143 SER A 147 5 5 HELIX 9 AA9 ARG A 156 HIS A 177 1 22 HELIX 10 AB1 SER A 204 ARG A 220 1 17 HELIX 11 AB2 ARG B 18 ARG B 31 1 14 HELIX 12 AB3 ARG B 40 GLY B 44 5 5 HELIX 13 AB4 THR B 46 TYR B 55 1 10 HELIX 14 AB5 GLN B 68 LEU B 79 1 12 HELIX 15 AB6 SER B 106 ALA B 118 1 13 HELIX 16 AB7 ALA B 118 ALA B 129 1 12 HELIX 17 AB8 GLY B 130 VAL B 132 5 3 HELIX 18 AB9 SER B 143 SER B 147 5 5 HELIX 19 AC1 ARG B 156 HIS B 177 1 22 HELIX 20 AC2 SER B 204 ARG B 220 1 17 SHEET 1 AA1 7 LEU A 59 THR A 63 0 SHEET 2 AA1 7 ASP A 34 VAL A 39 1 N GLY A 37 O ARG A 60 SHEET 3 AA1 7 THR A 10 VAL A 14 1 N LEU A 13 O VAL A 36 SHEET 4 AA1 7 ILE A 86 VAL A 89 1 O PHE A 88 N VAL A 14 SHEET 5 AA1 7 LEU A 137 MET A 141 1 O GLY A 139 N LEU A 87 SHEET 6 AA1 7 ALA A 183 ALA A 188 1 O ILE A 187 N ILE A 140 SHEET 7 AA1 7 GLY A 224 ASP A 229 1 O GLY A 224 N MET A 184 SHEET 1 AA2 7 LEU B 59 THR B 63 0 SHEET 2 AA2 7 ASP B 34 VAL B 39 1 N GLY B 37 O ARG B 60 SHEET 3 AA2 7 THR B 10 VAL B 14 1 N LEU B 13 O VAL B 36 SHEET 4 AA2 7 ILE B 86 VAL B 89 1 O PHE B 88 N LEU B 12 SHEET 5 AA2 7 LEU B 137 MET B 141 1 O GLY B 139 N LEU B 87 SHEET 6 AA2 7 ALA B 183 ALA B 188 1 O ILE B 187 N ILE B 140 SHEET 7 AA2 7 GLY B 224 ASP B 229 1 O GLU B 226 N LEU B 186 SITE 1 AC1 35 GLY A 15 SER A 17 ARG A 18 GLY A 19 SITE 2 AC1 35 LEU A 20 ARG A 40 LEU A 64 ASP A 65 SITE 3 AC1 35 ILE A 66 THR A 67 ASN A 90 ALA A 91 SITE 4 AC1 35 GLY A 92 MET A 141 SER A 142 SER A 143 SITE 5 AC1 35 TYR A 159 LYS A 163 PRO A 189 GLY A 190 SITE 6 AC1 35 TRP A 191 VAL A 192 THR A 194 LEU A 196 SITE 7 AC1 35 GLY A 197 CL A 302 CL A 303 EDO A 304 SITE 8 AC1 35 HOH A 409 HOH A 438 HOH A 458 HOH A 461 SITE 9 AC1 35 HOH A 482 HOH A 489 HOH A 490 SITE 1 AC2 2 SER A 17 NAP A 301 SITE 1 AC3 5 GLY A 144 PRO A 189 GLY A 190 NAP A 301 SITE 2 AC3 5 HOH A 593 SITE 1 AC4 7 SER A 143 GLN A 145 ARG A 156 TYR A 159 SITE 2 AC4 7 NAP A 301 HOH A 478 HOH A 533 SITE 1 AC5 4 PRO A 133 ARG A 134 ASP A 135 HOH A 544 SITE 1 AC6 7 HOH A 475 HOH A 535 HOH A 547 PRO B 69 SITE 2 AC6 7 ARG B 73 ARG B 123 THR B 127 SITE 1 AC7 4 SER A 80 GLY A 81 ARG A 82 HOH A 435 SITE 1 AC8 6 ARG A 18 GLY A 19 PRO A 47 ILE A 205 SITE 2 AC8 6 HOH A 437 HOH A 468 SITE 1 AC9 5 PRO A 69 ARG A 73 ARG A 123 THR A 127 SITE 2 AC9 5 HOH B 432 SITE 1 AD1 2 ARG A 193 HOH A 487 SITE 1 AD2 35 SER B 17 ARG B 18 GLY B 19 LEU B 20 SITE 2 AD2 35 ARG B 40 LEU B 64 ASP B 65 ILE B 66 SITE 3 AD2 35 ASN B 90 ALA B 91 GLY B 92 MET B 141 SITE 4 AD2 35 SER B 142 SER B 143 TYR B 159 LYS B 163 SITE 5 AD2 35 PRO B 189 GLY B 190 TRP B 191 VAL B 192 SITE 6 AD2 35 THR B 194 LEU B 196 CL B 302 CL B 303 SITE 7 AD2 35 EDO B 307 HOH B 403 HOH B 405 HOH B 409 SITE 8 AD2 35 HOH B 413 HOH B 426 HOH B 443 HOH B 447 SITE 9 AD2 35 HOH B 491 HOH B 493 HOH B 563 SITE 1 AD3 5 GLY B 15 SER B 17 VAL B 39 NAP B 301 SITE 2 AD3 5 HOH B 438 SITE 1 AD4 7 GLY B 144 ALA B 188 PRO B 189 GLY B 190 SITE 2 AD4 7 NAP B 301 EDO B 307 HOH B 610 SITE 1 AD5 4 LEU B 196 GLY B 198 PRO B 199 HOH B 551 SITE 1 AD6 6 GLY A 221 VAL B 35 ASP B 57 ARG B 58 SITE 2 AD6 6 ARG B 60 ARG B 82 SITE 1 AD7 3 ASP B 112 ILE B 115 THR B 116 SITE 1 AD8 7 SER B 143 GLN B 145 ARG B 156 TYR B 159 SITE 2 AD8 7 NAP B 301 CL B 303 HOH B 497 SITE 1 AD9 5 ASP A 135 ALA B 52 LEU B 59 ARG B 60 SITE 2 AD9 5 ILE B 61 CRYST1 46.400 76.150 65.480 90.00 109.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021552 0.000000 0.007782 0.00000 SCALE2 0.000000 0.013132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016237 0.00000