HEADER STRUCTURAL GENOMICS UNKNOWN FUNCTION 28-FEB-17 5V01 TITLE CRYSTAL STRUCTURE OF THE COMPETENCE DAMAGE-INDUCIBLE PROTEIN A (COMA) TITLE 2 FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPETENCE DAMAGE-INDUCIBLE PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH SOURCE 3 78578; SOURCE 4 ORGANISM_TAXID: 272620; SOURCE 5 STRAIN: ATCC 700721 / MGH 78578; SOURCE 6 GENE: YDEJ, KPN_01597; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS CINA FAMILY, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID, STRUCTURAL GENOMICS UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BOREK,Z.WAWRZAK,S.GRIMSHAW,J.SANDOVAL,E.EVDOKIMOVA,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 5 15-NOV-23 5V01 1 REMARK REVDAT 4 25-OCT-23 5V01 1 REMARK REVDAT 3 22-FEB-23 5V01 1 COMPND SOURCE REMARK SEQRES REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 18-DEC-19 5V01 1 REMARK REVDAT 1 15-MAR-17 5V01 0 JRNL AUTH D.BOREK JRNL TITL CRYSTAL STRUCTURE OF THE COMPETENCE DAMAGE-INDUCIBLE PROTEIN JRNL TITL 2 A (COMA) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH JRNL TITL 3 78578 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 62288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3179 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2626 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2351 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3587 ; 1.450 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5425 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 6.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.881 ;23.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;11.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3128 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 1.786 ; 1.591 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1398 ; 1.786 ; 1.592 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1775 ; 2.280 ; 2.393 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1776 ; 2.280 ; 2.392 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 3.256 ; 1.971 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1226 ; 3.249 ; 1.970 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1813 ; 4.064 ; 2.835 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3083 ; 4.792 ;21.445 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2956 ; 4.111 ;20.175 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4977 ; 1.420 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 236 ;28.223 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5062 ;12.366 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5V01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : 0.87600 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2A9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M PH-CITRATE PH4.2, REMARK 280 20% PEG8K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.21650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 ILE B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ASP B 8 REMARK 465 ALA B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 48 NA NA B 209 1.67 REMARK 500 O GLN B 48 NA NA B 209 1.67 REMARK 500 O HOH A 425 O HOH A 436 2.04 REMARK 500 O HOH A 433 O HOH A 460 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CSO B 142 O HOH A 304 2756 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 -89.10 -126.93 REMARK 500 PHE A 54 -4.57 -143.38 REMARK 500 ASP A 56 -8.74 -144.00 REMARK 500 SER A 82 167.40 74.20 REMARK 500 SER B 35 -89.59 -118.63 REMARK 500 SER B 35 -85.66 -116.91 REMARK 500 PHE B 54 -2.27 -147.09 REMARK 500 ASP B 56 -4.99 -143.37 REMARK 500 SER B 82 164.38 74.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 482 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 480 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 481 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 163 O REMARK 620 2 SER A 163 O 1.0 REMARK 620 3 HOH A 379 O 97.7 98.2 REMARK 620 4 HOH A 397 O 150.0 150.8 85.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 O REMARK 620 2 THR B 51 OG1 86.2 REMARK 620 3 HOH B 408 O 85.0 169.0 REMARK 620 4 HOH B 409 O 146.0 94.1 97.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95667 RELATED DB: TARGETTRACK DBREF 5V01 A 1 170 UNP A6T8V7 A6T8V7_KLEP7 1 170 DBREF 5V01 B 1 170 UNP A6T8V7 A6T8V7_KLEP7 1 170 SEQADV 5V01 SER A -2 UNP A6T8V7 EXPRESSION TAG SEQADV 5V01 ASN A -1 UNP A6T8V7 EXPRESSION TAG SEQADV 5V01 ALA A 0 UNP A6T8V7 EXPRESSION TAG SEQADV 5V01 SER B -2 UNP A6T8V7 EXPRESSION TAG SEQADV 5V01 ASN B -1 UNP A6T8V7 EXPRESSION TAG SEQADV 5V01 ALA B 0 UNP A6T8V7 EXPRESSION TAG SEQRES 1 A 173 SER ASN ALA MET THR ASP GLU ILE ASP SER ASP ALA ASN SEQRES 2 A 173 ASN THR HIS GLU LEU THR ALA GLU VAL ALA ARG ALA LEU SEQRES 3 A 173 ILE ALA ARG GLY TRP ARG LEU THR THR ALA GLU SER CYS SEQRES 4 A 173 THR GLY GLY ASN LEU ALA ALA ALA LEU CYS ALA GLN ALA SEQRES 5 A 173 ASP THR ALA ALA PHE TYR ASP THR GLY VAL VAL THR PHE SEQRES 6 A 173 SER ASP GLU ALA LYS ARG ASN VAL LEU GLN VAL ARG ALA SEQRES 7 A 173 GLU THR LEU ALA VAL HIS SER ALA VAL SER GLU ALA CYS SEQRES 8 A 173 VAL GLN GLU MET SER SER GLY ILE LEU ALA LEU ALA GLY SEQRES 9 A 173 ALA ASP ILE ALA ILE ALA VAL SER GLY TYR ALA GLY PRO SEQRES 10 A 173 GLU GLY GLY GLU ASP GLY THR PRO ALA GLY THR VAL TRP SEQRES 11 A 173 PHE ALA TRP ASN PHE ARG GLY GLN THR GLU THR LYS ARG SEQRES 12 A 173 MET CYS PHE ALA GLY ASP CYS GLU THR VAL VAL ALA LYS SEQRES 13 A 173 ALA VAL ARG TYR ALA LEU ALA ALA LEU SER GLU LYS LEU SEQRES 14 A 173 ALA HIS TRP GLN SEQRES 1 B 173 SER ASN ALA MET THR ASP GLU ILE ASP SER ASP ALA ASN SEQRES 2 B 173 ASN THR HIS GLU LEU THR ALA GLU VAL ALA ARG ALA LEU SEQRES 3 B 173 ILE ALA ARG GLY TRP ARG LEU THR THR ALA GLU SER CYS SEQRES 4 B 173 THR GLY GLY ASN LEU ALA ALA ALA LEU CYS ALA GLN ALA SEQRES 5 B 173 ASP THR ALA ALA PHE TYR ASP THR GLY VAL VAL THR PHE SEQRES 6 B 173 SER ASP GLU ALA LYS ARG ASN VAL LEU GLN VAL ARG ALA SEQRES 7 B 173 GLU THR LEU ALA VAL HIS SER ALA VAL SER GLU ALA CYS SEQRES 8 B 173 VAL GLN GLU MET SER SER GLY ILE LEU ALA LEU ALA GLY SEQRES 9 B 173 ALA ASP ILE ALA ILE ALA VAL SER GLY TYR ALA GLY PRO SEQRES 10 B 173 GLU GLY GLY GLU ASP GLY THR PRO ALA GLY THR VAL TRP SEQRES 11 B 173 PHE ALA TRP ASN PHE ARG GLY GLN THR GLU THR LYS ARG SEQRES 12 B 173 MET CYS PHE ALA GLY ASP CYS GLU THR VAL VAL ALA LYS SEQRES 13 B 173 ALA VAL ARG TYR ALA LEU ALA ALA LEU SER GLU LYS LEU SEQRES 14 B 173 ALA HIS TRP GLN HET CSO B 142 7 HET CL A 201 1 HET CL A 202 1 HET NA A 203 1 HET CL B 201 1 HET CL B 202 1 HET CL B 203 1 HET CL B 204 1 HET CL B 205 1 HET CL B 206 1 HET CL B 207 1 HET CL B 208 1 HET NA B 209 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 CL 10(CL 1-) FORMUL 5 NA 2(NA 1+) FORMUL 15 HOH *363(H2 O) HELIX 1 AA1 ASN A 11 GLY A 27 1 17 HELIX 2 AA2 GLY A 39 GLN A 48 1 10 HELIX 3 AA3 ASP A 50 ALA A 53 5 4 HELIX 4 AA4 SER A 63 GLN A 72 1 10 HELIX 5 AA5 ARG A 74 SER A 82 1 9 HELIX 6 AA6 SER A 85 GLY A 101 1 17 HELIX 7 AA7 ASP A 146 ALA A 167 1 22 HELIX 8 AA8 ASN B 11 GLY B 27 1 17 HELIX 9 AA9 GLY B 39 GLN B 48 1 10 HELIX 10 AB1 ASP B 50 ALA B 53 5 4 HELIX 11 AB2 SER B 63 GLN B 72 1 10 HELIX 12 AB3 ARG B 74 SER B 82 1 9 HELIX 13 AB4 SER B 85 GLY B 101 1 17 HELIX 14 AB5 ASP B 146 LEU B 166 1 21 SHEET 1 AA110 GLN A 135 CYS A 142 0 SHEET 2 AA110 THR A 125 PHE A 132 -1 N PHE A 132 O GLN A 135 SHEET 3 AA110 ILE A 104 GLY A 110 -1 N SER A 109 O TRP A 127 SHEET 4 AA110 LEU A 30 GLU A 34 1 N ALA A 33 O ILE A 106 SHEET 5 AA110 TYR A 55 THR A 61 1 O THR A 61 N GLU A 34 SHEET 6 AA110 TYR B 55 THR B 61 -1 O VAL B 60 N GLY A 58 SHEET 7 AA110 LEU B 30 GLU B 34 1 N GLU B 34 O THR B 61 SHEET 8 AA110 ILE B 104 GLY B 110 1 O ILE B 106 N ALA B 33 SHEET 9 AA110 THR B 125 PHE B 132 -1 O TRP B 127 N SER B 109 SHEET 10 AA110 GLN B 135 CYS B 142 -1 O MET B 141 N VAL B 126 LINK C MET B 141 N BCSO B 142 1555 1555 1.35 LINK C BCSO B 142 N PHE B 143 1555 1555 1.32 LINK O ASER A 163 NA NA A 203 1555 1555 2.28 LINK O BSER A 163 NA NA A 203 1555 1555 2.28 LINK NA NA A 203 O HOH A 379 1555 1555 2.43 LINK NA NA A 203 O HOH A 397 1555 1555 2.78 LINK O CYS B 46 NA NA B 209 1555 1555 2.29 LINK OG1 THR B 51 NA NA B 209 1555 1555 2.41 LINK NA NA B 209 O HOH B 408 1555 1555 2.41 LINK NA NA B 209 O HOH B 409 1555 1555 2.41 CISPEP 1 GLY A 113 PRO A 114 0 3.45 CISPEP 2 GLY B 113 PRO B 114 0 5.85 SITE 1 AC1 5 ASN A 40 HOH A 335 HOH A 447 ALA B 43 SITE 2 AC1 5 ALA B 47 SITE 1 AC2 1 GLU A 76 SITE 1 AC3 3 SER A 163 HOH A 379 HOH A 397 SITE 1 AC4 3 SER B 35 PHE B 62 HOH B 414 SITE 1 AC5 3 ALA B 17 GLU B 118 ASP B 119 SITE 1 AC6 1 HIS B 81 SITE 1 AC7 4 GLN B 72 GLY B 95 HOH B 381 HOH B 445 SITE 1 AC8 2 ALA B 22 ARG B 26 SITE 1 AC9 4 HIS A 13 ALA B 102 ARG B 133 HOH B 367 SITE 1 AD1 3 ARG B 26 TRP B 28 GLN B 170 SITE 1 AD2 2 ARG B 140 HOH B 412 SITE 1 AD3 5 CYS B 46 GLN B 48 THR B 51 HOH B 408 SITE 2 AD3 5 HOH B 409 CRYST1 38.452 90.433 44.126 90.00 103.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026006 0.000000 0.006364 0.00000 SCALE2 0.000000 0.011058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023331 0.00000