HEADER HYDROLASE/DNA 28-FEB-17 5V0A TITLE CRYSTAL STRUCTURE OF HUMAN EXONUCLEASE 1 EXO1 (D225A) IN COMPLEX WITH TITLE 2 5' RECESSED-END DNA (RVIII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE 1; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: UNP RESIDUES 1-352; COMPND 5 SYNONYM: HEXO1, EXONUCLEASE I, HEXOI; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*TP*CP*AP*T)-3'); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXO1, EXOI, HEX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,L.S.BEESE REVDAT 6 04-OCT-23 5V0A 1 LINK REVDAT 5 04-DEC-19 5V0A 1 REMARK REVDAT 4 13-SEP-17 5V0A 1 REMARK REVDAT 3 21-JUN-17 5V0A 1 JRNL REVDAT 2 07-JUN-17 5V0A 1 JRNL REVDAT 1 24-MAY-17 5V0A 0 JRNL AUTH Y.SHI,H.W.HELLINGA,L.S.BEESE JRNL TITL INTERPLAY OF CATALYSIS, FIDELITY, THREADING, AND JRNL TITL 2 PROCESSIVITY IN THE EXO- AND ENDONUCLEOLYTIC REACTIONS OF JRNL TITL 3 HUMAN EXONUCLEASE I. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6010 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533382 JRNL DOI 10.1073/PNAS.1704845114 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3727 - 5.4326 0.97 1704 148 0.1822 0.2171 REMARK 3 2 5.4326 - 4.3139 0.99 1621 144 0.1808 0.2146 REMARK 3 3 4.3139 - 3.7691 1.00 1617 146 0.1999 0.2158 REMARK 3 4 3.7691 - 3.4247 1.00 1598 138 0.2139 0.2540 REMARK 3 5 3.4247 - 3.1794 1.00 1574 141 0.2155 0.2826 REMARK 3 6 3.1794 - 2.9920 1.00 1584 141 0.2365 0.2637 REMARK 3 7 2.9920 - 2.8422 1.00 1558 136 0.2467 0.3083 REMARK 3 8 2.8422 - 2.7185 1.00 1572 142 0.2701 0.2804 REMARK 3 9 2.7185 - 2.6139 1.00 1553 137 0.2712 0.3351 REMARK 3 10 2.6139 - 2.5237 1.00 1567 136 0.2726 0.3778 REMARK 3 11 2.5237 - 2.4448 1.00 1554 140 0.2899 0.2938 REMARK 3 12 2.4448 - 2.3750 0.98 1502 129 0.2937 0.3529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3301 REMARK 3 ANGLE : 0.986 4546 REMARK 3 CHIRALITY : 0.041 512 REMARK 3 PLANARITY : 0.005 504 REMARK 3 DIHEDRAL : 16.687 1274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0158 -47.0227 -23.1040 REMARK 3 T TENSOR REMARK 3 T11: 1.4785 T22: 1.0927 REMARK 3 T33: 1.2607 T12: 0.0814 REMARK 3 T13: 0.1953 T23: -0.4066 REMARK 3 L TENSOR REMARK 3 L11: 9.0822 L22: 8.4949 REMARK 3 L33: 4.1836 L12: 5.7965 REMARK 3 L13: -0.3955 L23: -4.7259 REMARK 3 S TENSOR REMARK 3 S11: -0.1398 S12: 2.5922 S13: 0.0181 REMARK 3 S21: -1.7226 S22: 3.2087 S23: -1.4884 REMARK 3 S31: 0.1280 S32: 1.0205 S33: -2.1660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9087 -39.2968 -8.5012 REMARK 3 T TENSOR REMARK 3 T11: 1.3639 T22: 1.0930 REMARK 3 T33: 1.5055 T12: 0.3558 REMARK 3 T13: -0.0021 T23: -0.4947 REMARK 3 L TENSOR REMARK 3 L11: 2.8161 L22: 6.7093 REMARK 3 L33: 5.0904 L12: 2.2645 REMARK 3 L13: 1.8606 L23: 5.6831 REMARK 3 S TENSOR REMARK 3 S11: 1.1363 S12: -1.4287 S13: 0.3919 REMARK 3 S21: 0.6901 S22: 0.6561 S23: -2.4333 REMARK 3 S31: 1.1541 S32: 2.2721 S33: -2.0600 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 10:13) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3383 -18.9306 -5.6155 REMARK 3 T TENSOR REMARK 3 T11: 1.4006 T22: 0.8734 REMARK 3 T33: 0.9998 T12: -0.2644 REMARK 3 T13: 0.3263 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 2.8724 L22: 2.9229 REMARK 3 L33: 4.0631 L12: -1.7888 REMARK 3 L13: 0.3933 L23: -1.7586 REMARK 3 S TENSOR REMARK 3 S11: 0.2990 S12: -0.3824 S13: 1.0365 REMARK 3 S21: -0.8457 S22: 0.0243 S23: -1.0908 REMARK 3 S31: -1.5304 S32: 1.5212 S33: -0.2954 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9263 -34.5894 -11.1915 REMARK 3 T TENSOR REMARK 3 T11: 0.7889 T22: 0.7890 REMARK 3 T33: 0.9543 T12: 0.2186 REMARK 3 T13: 0.0687 T23: -0.1507 REMARK 3 L TENSOR REMARK 3 L11: 3.2722 L22: 1.8223 REMARK 3 L33: 3.6745 L12: -0.4325 REMARK 3 L13: -0.1412 L23: 1.0963 REMARK 3 S TENSOR REMARK 3 S11: 0.5574 S12: -0.0917 S13: 1.1827 REMARK 3 S21: 0.1327 S22: 0.9103 S23: -1.7085 REMARK 3 S31: 2.1055 S32: 0.1975 S33: -1.1648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1544 -46.1636 -18.0925 REMARK 3 T TENSOR REMARK 3 T11: 1.0454 T22: 0.8783 REMARK 3 T33: 1.9735 T12: 0.3370 REMARK 3 T13: 0.1394 T23: -1.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.7060 L22: 8.0148 REMARK 3 L33: 3.6726 L12: -0.6747 REMARK 3 L13: 0.7597 L23: 4.0098 REMARK 3 S TENSOR REMARK 3 S11: 1.3979 S12: -0.2510 S13: 1.6991 REMARK 3 S21: 0.4560 S22: -0.4094 S23: -3.6584 REMARK 3 S31: 0.8289 S32: 0.3621 S33: -0.7152 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN Z AND RESID 2:30) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4507 -28.5800 -17.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 0.5854 REMARK 3 T33: 0.4497 T12: 0.0444 REMARK 3 T13: -0.0141 T23: 0.1083 REMARK 3 L TENSOR REMARK 3 L11: 2.2163 L22: 3.3515 REMARK 3 L33: 4.7420 L12: 0.8465 REMARK 3 L13: -2.3615 L23: 1.5903 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: 0.2858 S13: 0.0487 REMARK 3 S21: -0.3725 S22: 0.0407 S23: 0.0806 REMARK 3 S31: -0.3095 S32: -0.0032 S33: -0.2216 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN Z AND RESID 31:42) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1364 -24.5379 -0.8019 REMARK 3 T TENSOR REMARK 3 T11: 0.7875 T22: 0.6581 REMARK 3 T33: 0.6032 T12: -0.1402 REMARK 3 T13: 0.0021 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 8.8031 L22: 3.7917 REMARK 3 L33: 3.1119 L12: 0.8046 REMARK 3 L13: -0.7551 L23: 0.3240 REMARK 3 S TENSOR REMARK 3 S11: 0.7812 S12: 0.4085 S13: 0.0604 REMARK 3 S21: 0.2635 S22: -0.3400 S23: -0.7254 REMARK 3 S31: -0.2262 S32: -0.0022 S33: -0.5142 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN Z AND RESID 43:54) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8111 -19.4309 8.8159 REMARK 3 T TENSOR REMARK 3 T11: 1.0785 T22: 0.6461 REMARK 3 T33: 0.8374 T12: -0.2309 REMARK 3 T13: -0.1135 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 6.3379 L22: 2.9933 REMARK 3 L33: 4.6596 L12: 0.1631 REMARK 3 L13: 0.4152 L23: 0.9901 REMARK 3 S TENSOR REMARK 3 S11: -0.3715 S12: -0.5366 S13: 1.0075 REMARK 3 S21: -0.3770 S22: 0.3668 S23: -0.6811 REMARK 3 S31: -1.7312 S32: 0.2849 S33: -0.0287 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN Z AND RESID 55:72) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9227 -16.0038 -5.1527 REMARK 3 T TENSOR REMARK 3 T11: 0.9261 T22: 0.3949 REMARK 3 T33: 0.7163 T12: 0.1125 REMARK 3 T13: 0.1134 T23: 0.1163 REMARK 3 L TENSOR REMARK 3 L11: 2.9875 L22: 1.9133 REMARK 3 L33: 3.2928 L12: -0.1420 REMARK 3 L13: 0.7484 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: 0.5202 S12: 0.3176 S13: 0.7817 REMARK 3 S21: -0.3414 S22: -0.3825 S23: -0.3383 REMARK 3 S31: -0.9926 S32: -0.1859 S33: -0.1902 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN Z AND RESID 73:84) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6278 -33.0692 2.3119 REMARK 3 T TENSOR REMARK 3 T11: 0.4984 T22: 0.6830 REMARK 3 T33: 0.4453 T12: -0.0124 REMARK 3 T13: 0.0339 T23: 0.1262 REMARK 3 L TENSOR REMARK 3 L11: 2.8441 L22: 7.8512 REMARK 3 L33: 2.6405 L12: 0.7882 REMARK 3 L13: -0.1227 L23: -0.3292 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.7432 S13: -0.0254 REMARK 3 S21: 0.2341 S22: -0.2614 S23: -0.9244 REMARK 3 S31: 0.6401 S32: -0.7205 S33: 0.0806 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN Z AND RESID 85:97) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9026 -40.6404 4.6626 REMARK 3 T TENSOR REMARK 3 T11: 0.9459 T22: 0.8303 REMARK 3 T33: 0.8788 T12: 0.0101 REMARK 3 T13: -0.0326 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 6.2940 L22: 3.7717 REMARK 3 L33: 4.1491 L12: 0.6553 REMARK 3 L13: 0.3913 L23: -0.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.4962 S12: -0.7344 S13: -0.8125 REMARK 3 S21: 0.7392 S22: 0.0120 S23: 0.3464 REMARK 3 S31: 0.6114 S32: 0.3569 S33: -0.5485 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN Z AND RESID 98:124) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5178 -28.5885 5.6756 REMARK 3 T TENSOR REMARK 3 T11: 0.9545 T22: 0.8092 REMARK 3 T33: 1.1581 T12: -0.1691 REMARK 3 T13: -0.1362 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 2.4565 L22: 5.1513 REMARK 3 L33: 3.9995 L12: -1.7215 REMARK 3 L13: 2.7570 L23: 0.5284 REMARK 3 S TENSOR REMARK 3 S11: -0.3705 S12: 1.0869 S13: 0.4968 REMARK 3 S21: -0.5397 S22: 0.2270 S23: -0.6492 REMARK 3 S31: -0.4594 S32: 1.0475 S33: 0.3431 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN Z AND RESID 125:145) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9868 -21.1086 5.8216 REMARK 3 T TENSOR REMARK 3 T11: 0.8489 T22: 0.4822 REMARK 3 T33: 0.5373 T12: 0.0763 REMARK 3 T13: 0.1133 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 5.5452 L22: 3.8267 REMARK 3 L33: 5.6199 L12: 1.1106 REMARK 3 L13: 0.9529 L23: -0.2466 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.6724 S13: -0.3509 REMARK 3 S21: 0.6969 S22: 0.0164 S23: 0.0865 REMARK 3 S31: -0.4206 S32: -0.8944 S33: 0.0195 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN Z AND RESID 146:173) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8170 -32.8316 -5.6113 REMARK 3 T TENSOR REMARK 3 T11: 0.4705 T22: 0.6438 REMARK 3 T33: 0.4648 T12: 0.0027 REMARK 3 T13: 0.0277 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 2.5065 L22: 3.2631 REMARK 3 L33: 3.8832 L12: 0.0654 REMARK 3 L13: 1.4129 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: 0.3816 S12: 0.2203 S13: 0.0640 REMARK 3 S21: 0.2283 S22: -0.0934 S23: 0.3138 REMARK 3 S31: 0.0592 S32: -0.6569 S33: -0.2265 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN Z AND RESID 174:184) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8266 -34.2232 -12.9694 REMARK 3 T TENSOR REMARK 3 T11: 0.6044 T22: 0.5868 REMARK 3 T33: 0.5392 T12: -0.0284 REMARK 3 T13: 0.0307 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.8616 L22: 1.2473 REMARK 3 L33: 1.3911 L12: -0.9526 REMARK 3 L13: 0.9312 L23: -0.9314 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.0867 S13: 0.0957 REMARK 3 S21: -0.1712 S22: -0.1435 S23: 0.0529 REMARK 3 S31: -0.1702 S32: -0.1683 S33: 0.1733 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN Z AND RESID 185:194) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9483 -21.1528 -15.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.7787 T22: 0.6524 REMARK 3 T33: 0.8166 T12: -0.1205 REMARK 3 T13: 0.0897 T23: 0.2367 REMARK 3 L TENSOR REMARK 3 L11: 3.8102 L22: 2.4921 REMARK 3 L33: 2.7579 L12: -1.7970 REMARK 3 L13: -0.3551 L23: -0.6044 REMARK 3 S TENSOR REMARK 3 S11: 0.2546 S12: 0.2017 S13: 0.5383 REMARK 3 S21: 0.7155 S22: 0.3118 S23: -0.3896 REMARK 3 S31: -0.4031 S32: -0.4559 S33: -0.4798 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN Z AND RESID 195:224) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8573 -43.5316 -19.8374 REMARK 3 T TENSOR REMARK 3 T11: 0.5725 T22: 0.5527 REMARK 3 T33: 0.4822 T12: 0.0659 REMARK 3 T13: -0.0119 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 4.0913 L22: 6.1793 REMARK 3 L33: 3.3970 L12: -1.6934 REMARK 3 L13: 0.3472 L23: -0.2579 REMARK 3 S TENSOR REMARK 3 S11: 0.3363 S12: 0.5712 S13: -0.1759 REMARK 3 S21: -0.6126 S22: -0.4789 S23: 0.3035 REMARK 3 S31: -0.0698 S32: -0.0148 S33: 0.2373 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN Z AND RESID 225:244) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1677 -51.3674 -15.7322 REMARK 3 T TENSOR REMARK 3 T11: 0.6553 T22: 0.6460 REMARK 3 T33: 0.6832 T12: 0.2268 REMARK 3 T13: 0.0253 T23: 0.0804 REMARK 3 L TENSOR REMARK 3 L11: 3.5499 L22: 3.1551 REMARK 3 L33: 3.7068 L12: 0.3071 REMARK 3 L13: -1.1865 L23: 0.6843 REMARK 3 S TENSOR REMARK 3 S11: 0.1502 S12: 0.4717 S13: -0.1044 REMARK 3 S21: -0.6416 S22: -0.0701 S23: -0.8090 REMARK 3 S31: 0.6423 S32: 1.0468 S33: -0.1996 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN Z AND RESID 245:270) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6892 -61.0769 -16.0556 REMARK 3 T TENSOR REMARK 3 T11: 0.9774 T22: 0.5951 REMARK 3 T33: 0.9615 T12: 0.0790 REMARK 3 T13: -0.1386 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 7.5588 L22: 6.3235 REMARK 3 L33: 5.6135 L12: 0.7390 REMARK 3 L13: -2.6774 L23: 0.5836 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.3532 S13: -1.5277 REMARK 3 S21: -0.0640 S22: -0.3104 S23: -0.6790 REMARK 3 S31: 1.1712 S32: 0.5976 S33: 0.4377 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN Z AND RESID 271:275) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0210 -56.6569 -6.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.8950 T22: 0.6134 REMARK 3 T33: 0.9112 T12: -0.0133 REMARK 3 T13: 0.0520 T23: 0.2700 REMARK 3 L TENSOR REMARK 3 L11: 6.0384 L22: 3.6688 REMARK 3 L33: 4.7811 L12: -0.1127 REMARK 3 L13: -1.3055 L23: 1.7732 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: -0.7651 S13: -1.2239 REMARK 3 S21: 0.4487 S22: -0.5214 S23: 0.2881 REMARK 3 S31: 1.2696 S32: 0.8311 S33: 0.2677 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN Z AND RESID 276:300) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2049 -41.2989 -0.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.3910 T22: 0.7480 REMARK 3 T33: 0.4814 T12: -0.1058 REMARK 3 T13: 0.0095 T23: 0.1355 REMARK 3 L TENSOR REMARK 3 L11: 1.9516 L22: 4.2338 REMARK 3 L33: 3.7656 L12: 0.2221 REMARK 3 L13: -0.1223 L23: 1.8653 REMARK 3 S TENSOR REMARK 3 S11: 0.2332 S12: -0.2589 S13: -0.1196 REMARK 3 S21: -0.2388 S22: -0.3470 S23: 0.5819 REMARK 3 S31: 0.0250 S32: -0.9221 S33: 0.0796 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN Z AND RESID 301:309) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4376 -52.8411 -0.9128 REMARK 3 T TENSOR REMARK 3 T11: 0.7584 T22: 0.9079 REMARK 3 T33: 0.9320 T12: -0.3952 REMARK 3 T13: 0.0012 T23: 0.3408 REMARK 3 L TENSOR REMARK 3 L11: 8.6541 L22: 7.4342 REMARK 3 L33: 7.8310 L12: -0.9143 REMARK 3 L13: 5.8517 L23: 4.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: -0.3987 S13: -0.4997 REMARK 3 S21: 0.2909 S22: 0.6297 S23: -0.4343 REMARK 3 S31: 2.5562 S32: -1.5098 S33: -0.5470 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN Z AND RESID 310:326) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5132 -39.4364 8.9809 REMARK 3 T TENSOR REMARK 3 T11: 0.6189 T22: 0.7846 REMARK 3 T33: 0.5346 T12: -0.1557 REMARK 3 T13: 0.0698 T23: 0.1097 REMARK 3 L TENSOR REMARK 3 L11: 1.0997 L22: 2.7321 REMARK 3 L33: 2.5922 L12: -1.1012 REMARK 3 L13: -0.4805 L23: 1.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.4353 S13: -0.3534 REMARK 3 S21: 0.8511 S22: -0.1118 S23: 0.7894 REMARK 3 S31: 0.6228 S32: -0.7282 S33: 0.0859 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN Z AND RESID 327:338) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4953 -29.9481 15.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.7178 T22: 0.6612 REMARK 3 T33: 0.5440 T12: -0.1319 REMARK 3 T13: -0.0052 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 3.9184 L22: 8.7679 REMARK 3 L33: 3.7172 L12: -0.9233 REMARK 3 L13: -2.1442 L23: 0.4500 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: 0.0771 S13: 0.3793 REMARK 3 S21: 1.2844 S22: -0.2907 S23: -0.9065 REMARK 3 S31: -0.0975 S32: 0.3614 S33: 0.0243 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN Z AND RESID 339:345) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9537 -20.1218 11.7792 REMARK 3 T TENSOR REMARK 3 T11: 1.0550 T22: 1.4071 REMARK 3 T33: 0.8847 T12: 0.2791 REMARK 3 T13: 0.2088 T23: -0.3872 REMARK 3 L TENSOR REMARK 3 L11: 6.4753 L22: 3.9052 REMARK 3 L33: 6.2750 L12: 1.8935 REMARK 3 L13: 3.0601 L23: -0.4267 REMARK 3 S TENSOR REMARK 3 S11: 0.2123 S12: 0.1413 S13: 1.8909 REMARK 3 S21: 0.1298 S22: -0.4566 S23: 0.7986 REMARK 3 S31: 0.2017 S32: -0.1161 S33: 0.1120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 7.0, 10 MM REMARK 280 POTASSIUM CHLORIDE, 2-4% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.85700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.86950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.78550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.86950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.92850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.86950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.86950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.78550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.86950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.86950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.92850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.85700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 1 REMARK 465 ALA Z 346 REMARK 465 MET Z 347 REMARK 465 PRO Z 348 REMARK 465 ALA Z 349 REMARK 465 HIS Z 350 REMARK 465 SER Z 351 REMARK 465 ARG Z 352 REMARK 465 GLU Z 353 REMARK 465 ASN Z 354 REMARK 465 PHE Z 357 REMARK 465 GLN Z 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU Z 150 OH TYR Z 226 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 1 P DC B 1 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR Z 149 -125.18 -124.93 REMARK 500 ASP Z 173 -35.64 -36.85 REMARK 500 ASN Z 264 65.95 -102.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 80 SG REMARK 620 2 HOH Z 577 O 71.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD2 REMARK 620 2 ASP Z 171 OD2 90.3 REMARK 620 3 ASP Z 173 OD2 126.8 114.0 REMARK 620 4 HOH Z 533 O 76.1 166.3 73.9 REMARK 620 5 DC B 1 OP3 85.3 80.8 142.3 99.7 REMARK 620 6 DC B 1 OP1 145.4 97.7 80.1 94.7 63.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN Z 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD1 REMARK 620 2 HOH Z 512 O 89.7 REMARK 620 3 HOH Z 513 O 91.5 178.8 REMARK 620 4 HOH Z 521 O 99.7 91.2 88.7 REMARK 620 5 DC B 1 OP3 105.8 89.8 89.8 154.5 REMARK 620 6 DA B 102 O3' 172.2 96.7 82.1 75.9 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA Z 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Z 222 O REMARK 620 2 SER Z 229 OG 92.7 REMARK 620 3 ILE Z 233 O 85.5 76.8 REMARK 620 4 HOH Z 524 O 102.2 58.8 135.0 REMARK 620 5 DA A 5 OP2 166.3 86.7 81.1 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN Z 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA Z 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DA B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UZV RELATED DB: PDB REMARK 900 RELATED ID: 5V04 RELATED DB: PDB REMARK 900 RELATED ID: 5V05 RELATED DB: PDB REMARK 900 RELATED ID: 5V06 RELATED DB: PDB REMARK 900 RELATED ID: 5V07 RELATED DB: PDB REMARK 900 RELATED ID: 5V08 RELATED DB: PDB REMARK 900 RELATED ID: 5V09 RELATED DB: PDB REMARK 900 RELATED ID: 5V0B RELATED DB: PDB REMARK 900 RELATED ID: 5V0C RELATED DB: PDB REMARK 900 RELATED ID: 5V0D RELATED DB: PDB REMARK 900 RELATED ID: 5V0E RELATED DB: PDB DBREF 5V0A Z 1 352 UNP Q9UQ84 EXO1_HUMAN 1 352 DBREF 5V0A A 1 13 PDB 5V0A 5V0A 1 13 DBREF 5V0A B 1 9 PDB 5V0A 5V0A 1 9 SEQADV 5V0A ALA Z 225 UNP Q9UQ84 ASP 225 ENGINEERED MUTATION SEQADV 5V0A GLU Z 353 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0A ASN Z 354 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0A LEU Z 355 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0A TYR Z 356 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0A PHE Z 357 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0A GLN Z 358 UNP Q9UQ84 EXPRESSION TAG SEQRES 1 Z 358 MET GLY ILE GLN GLY LEU LEU GLN PHE ILE LYS GLU ALA SEQRES 2 Z 358 SER GLU PRO ILE HIS VAL ARG LYS TYR LYS GLY GLN VAL SEQRES 3 Z 358 VAL ALA VAL ASP THR TYR CYS TRP LEU HIS LYS GLY ALA SEQRES 4 Z 358 ILE ALA CYS ALA GLU LYS LEU ALA LYS GLY GLU PRO THR SEQRES 5 Z 358 ASP ARG TYR VAL GLY PHE CYS MET LYS PHE VAL ASN MET SEQRES 6 Z 358 LEU LEU SER HIS GLY ILE LYS PRO ILE LEU VAL PHE ASP SEQRES 7 Z 358 GLY CYS THR LEU PRO SER LYS LYS GLU VAL GLU ARG SER SEQRES 8 Z 358 ARG ARG GLU ARG ARG GLN ALA ASN LEU LEU LYS GLY LYS SEQRES 9 Z 358 GLN LEU LEU ARG GLU GLY LYS VAL SER GLU ALA ARG GLU SEQRES 10 Z 358 CYS PHE THR ARG SER ILE ASN ILE THR HIS ALA MET ALA SEQRES 11 Z 358 HIS LYS VAL ILE LYS ALA ALA ARG SER GLN GLY VAL ASP SEQRES 12 Z 358 CYS LEU VAL ALA PRO TYR GLU ALA ASP ALA GLN LEU ALA SEQRES 13 Z 358 TYR LEU ASN LYS ALA GLY ILE VAL GLN ALA ILE ILE THR SEQRES 14 Z 358 GLU ASP SER ASP LEU LEU ALA PHE GLY CYS LYS LYS VAL SEQRES 15 Z 358 ILE LEU LYS MET ASP GLN PHE GLY ASN GLY LEU GLU ILE SEQRES 16 Z 358 ASP GLN ALA ARG LEU GLY MET CYS ARG GLN LEU GLY ASP SEQRES 17 Z 358 VAL PHE THR GLU GLU LYS PHE ARG TYR MET CYS ILE LEU SEQRES 18 Z 358 SER GLY CYS ALA TYR LEU SER SER LEU ARG GLY ILE GLY SEQRES 19 Z 358 LEU ALA LYS ALA CYS LYS VAL LEU ARG LEU ALA ASN ASN SEQRES 20 Z 358 PRO ASP ILE VAL LYS VAL ILE LYS LYS ILE GLY HIS TYR SEQRES 21 Z 358 LEU LYS MET ASN ILE THR VAL PRO GLU ASP TYR ILE ASN SEQRES 22 Z 358 GLY PHE ILE ARG ALA ASN ASN THR PHE LEU TYR GLN LEU SEQRES 23 Z 358 VAL PHE ASP PRO ILE LYS ARG LYS LEU ILE PRO LEU ASN SEQRES 24 Z 358 ALA TYR GLU ASP ASP VAL ASP PRO GLU THR LEU SER TYR SEQRES 25 Z 358 ALA GLY GLN TYR VAL ASP ASP SER ILE ALA LEU GLN ILE SEQRES 26 Z 358 ALA LEU GLY ASN LYS ASP ILE ASN THR PHE GLU GLN ILE SEQRES 27 Z 358 ASP ASP TYR ASN PRO ASP THR ALA MET PRO ALA HIS SER SEQRES 28 Z 358 ARG GLU ASN LEU TYR PHE GLN SEQRES 1 A 13 DC DG DC DT DA DG DT DC DG DT DC DA DT SEQRES 1 B 9 DC DG DA DC DT DA DG DC DG HET MN Z 401 1 HET MN Z 402 1 HET MN Z 403 1 HET MN Z 404 1 HET NA Z 405 1 HET MN A 101 1 HET MN B 101 1 HET DA B 102 22 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM DA 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE FORMUL 4 MN 6(MN 2+) FORMUL 8 NA NA 1+ FORMUL 11 DA C10 H14 N5 O6 P FORMUL 12 HOH *96(H2 O) HELIX 1 AA1 GLY Z 5 ILE Z 10 1 6 HELIX 2 AA2 ARG Z 20 LYS Z 23 5 4 HELIX 3 AA3 THR Z 31 CYS Z 42 1 12 HELIX 4 AA4 CYS Z 42 LYS Z 48 1 7 HELIX 5 AA5 ASP Z 53 HIS Z 69 1 17 HELIX 6 AA6 LEU Z 82 ARG Z 108 1 27 HELIX 7 AA7 VAL Z 112 THR Z 120 1 9 HELIX 8 AA8 THR Z 126 SER Z 139 1 14 HELIX 9 AA9 GLU Z 150 ALA Z 161 1 12 HELIX 10 AB1 SER Z 172 PHE Z 177 1 6 HELIX 11 AB2 ALA Z 198 GLY Z 207 5 10 HELIX 12 AB3 THR Z 211 GLY Z 223 1 13 HELIX 13 AB4 GLY Z 234 ALA Z 245 1 12 HELIX 14 AB5 ASP Z 249 LYS Z 256 1 8 HELIX 15 AB6 LYS Z 256 LEU Z 261 1 6 HELIX 16 AB7 PRO Z 268 GLN Z 285 1 18 HELIX 17 AB8 ASP Z 306 GLY Z 314 5 9 HELIX 18 AB9 ASP Z 318 LEU Z 327 1 10 SHEET 1 AA1 7 SER Z 14 HIS Z 18 0 SHEET 2 AA1 7 ASN Z 191 ASP Z 196 -1 O GLU Z 194 N GLU Z 15 SHEET 3 AA1 7 LYS Z 181 LEU Z 184 -1 N LEU Z 184 O LEU Z 193 SHEET 4 AA1 7 ALA Z 166 ILE Z 168 1 N ILE Z 167 O ILE Z 183 SHEET 5 AA1 7 VAL Z 26 ASP Z 30 1 N ASP Z 30 O ILE Z 168 SHEET 6 AA1 7 LYS Z 72 PHE Z 77 1 O ILE Z 74 N VAL Z 29 SHEET 7 AA1 7 ASP Z 143 VAL Z 146 1 O LEU Z 145 N LEU Z 75 SHEET 1 AA2 2 LEU Z 286 ASP Z 289 0 SHEET 2 AA2 2 LYS Z 294 PRO Z 297 -1 O ILE Z 296 N VAL Z 287 LINK SG CYS Z 80 MN MN Z 403 1555 1555 2.52 LINK OD2 ASP Z 152 MN MN Z 401 1555 1555 2.09 LINK OD1 ASP Z 152 MN MN Z 402 1555 1555 2.22 LINK OD2 ASP Z 171 MN MN Z 401 1555 1555 2.19 LINK OD2 ASP Z 173 MN MN Z 401 1555 1555 2.14 LINK O SER Z 222 NA NA Z 405 1555 1555 2.46 LINK OG SER Z 229 NA NA Z 405 1555 1555 2.48 LINK O ILE Z 233 NA NA Z 405 1555 1555 2.58 LINK OD2 ASP Z 303 MN MN Z 404 1555 1555 2.18 LINK MN MN Z 401 O HOH Z 533 1555 1555 2.25 LINK MN MN Z 401 OP3 DC B 1 1555 1555 2.48 LINK MN MN Z 401 OP1 DC B 1 1555 1555 2.09 LINK MN MN Z 402 O HOH Z 512 1555 1555 2.23 LINK MN MN Z 402 O HOH Z 513 1555 1555 2.22 LINK MN MN Z 402 O HOH Z 521 1555 1555 2.20 LINK MN MN Z 402 OP3 DC B 1 1555 1555 2.14 LINK MN MN Z 402 O3' DA B 102 1555 1555 2.21 LINK MN MN Z 403 O HOH Z 577 1555 1555 2.22 LINK NA NA Z 405 O HOH Z 524 1555 1555 2.75 LINK NA NA Z 405 OP2 DA A 5 1555 1555 2.50 LINK O2 DC A 11 MN MN A 101 1555 1555 2.40 LINK O6 DG B 7 MN MN B 101 1555 1555 2.44 SITE 1 AC1 5 DC B 1 ASP Z 152 ASP Z 171 ASP Z 173 SITE 2 AC1 5 HOH Z 533 SITE 1 AC2 6 DC B 1 DA B 102 ASP Z 152 HOH Z 512 SITE 2 AC2 6 HOH Z 513 HOH Z 521 SITE 1 AC3 3 CYS Z 80 ILE Z 325 HOH Z 577 SITE 1 AC4 2 GLU Z 302 ASP Z 303 SITE 1 AC5 6 DA A 5 HOH A 204 SER Z 222 SER Z 229 SITE 2 AC5 6 ILE Z 233 HOH Z 524 SITE 1 AC6 2 DC A 11 GLU Z 44 SITE 1 AC7 1 DG B 7 SITE 1 AC8 11 DT A 10 DC B 1 HOH B 201 HOH B 203 SITE 2 AC8 11 HIS Z 36 ARG Z 92 ARG Z 96 MN Z 402 SITE 3 AC8 11 HOH Z 513 HOH Z 521 HOH Z 557 CRYST1 73.739 73.739 179.714 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005564 0.00000