HEADER HYDROLASE/DNA 28-FEB-17 5V0D TITLE CRYSTAL STRUCTURE OF HUMAN EXONUCLEASE 1 EXO1 (WT) IN COMPLEX WITH 5' TITLE 2 FLAP DNA (F2II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE 1; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: UNP RESIDUES 1-352; COMPND 5 SYNONYM: HEXO1, EXONUCLEASE I, HEXOI; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*AP*CP*TP*CP*A)-3'); COMPND 10 CHAIN: A; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*GP*TP*AP*CP*TP*AP*GP*CP*G)-3'); COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'-D(P*GP*TP*AP*CP*TP*AP*GP*CP*G)-3'); COMPND 18 CHAIN: E; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXO1, EXOI, HEX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,L.S.BEESE REVDAT 6 04-OCT-23 5V0D 1 LINK REVDAT 5 04-DEC-19 5V0D 1 REMARK REVDAT 4 13-SEP-17 5V0D 1 REMARK REVDAT 3 21-JUN-17 5V0D 1 JRNL REVDAT 2 07-JUN-17 5V0D 1 JRNL REVDAT 1 24-MAY-17 5V0D 0 JRNL AUTH Y.SHI,H.W.HELLINGA,L.S.BEESE JRNL TITL INTERPLAY OF CATALYSIS, FIDELITY, THREADING, AND JRNL TITL 2 PROCESSIVITY IN THE EXO- AND ENDONUCLEOLYTIC REACTIONS OF JRNL TITL 3 HUMAN EXONUCLEASE I. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6010 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533382 JRNL DOI 10.1073/PNAS.1704845114 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9835 - 6.6151 0.95 1517 128 0.1486 0.1570 REMARK 3 2 6.6151 - 5.2569 0.97 1535 135 0.1964 0.2433 REMARK 3 3 5.2569 - 4.5942 0.97 1545 139 0.1738 0.2203 REMARK 3 4 4.5942 - 4.1749 0.98 1544 140 0.1777 0.2512 REMARK 3 5 4.1749 - 3.8762 0.98 1567 139 0.2035 0.1970 REMARK 3 6 3.8762 - 3.6479 0.99 1565 139 0.2211 0.2334 REMARK 3 7 3.6479 - 3.4654 1.00 1561 144 0.2256 0.2916 REMARK 3 8 3.4654 - 3.3147 1.00 1593 140 0.2333 0.2293 REMARK 3 9 3.3147 - 3.1872 1.00 1594 139 0.2396 0.2910 REMARK 3 10 3.1872 - 3.0773 1.00 1598 151 0.2579 0.3234 REMARK 3 11 3.0773 - 2.9811 1.00 1577 141 0.2830 0.3239 REMARK 3 12 2.9811 - 2.8959 1.00 1572 136 0.2890 0.3192 REMARK 3 13 2.8959 - 2.8197 1.00 1593 133 0.2873 0.3268 REMARK 3 14 2.8197 - 2.7510 1.00 1587 156 0.3076 0.3139 REMARK 3 15 2.7510 - 2.6885 1.00 1569 141 0.3216 0.3946 REMARK 3 16 2.6885 - 2.6313 0.99 1602 126 0.3312 0.3278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3306 REMARK 3 ANGLE : 0.509 4550 REMARK 3 CHIRALITY : 0.020 513 REMARK 3 PLANARITY : 0.002 505 REMARK 3 DIHEDRAL : 15.461 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6533 46.5814 -20.8202 REMARK 3 T TENSOR REMARK 3 T11: 1.3694 T22: 1.1006 REMARK 3 T33: 1.4907 T12: 0.2144 REMARK 3 T13: -0.1172 T23: 0.3972 REMARK 3 L TENSOR REMARK 3 L11: 3.9242 L22: 3.7993 REMARK 3 L33: 3.4212 L12: -1.1118 REMARK 3 L13: -0.1094 L23: 2.8450 REMARK 3 S TENSOR REMARK 3 S11: 1.1204 S12: 0.4173 S13: -0.2336 REMARK 3 S21: -1.3797 S22: 0.4907 S23: 0.3368 REMARK 3 S31: 1.1872 S32: -0.3886 S33: -1.4037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1883 38.0832 -9.0530 REMARK 3 T TENSOR REMARK 3 T11: 1.7689 T22: 1.2687 REMARK 3 T33: 1.6058 T12: 0.0246 REMARK 3 T13: 0.1854 T23: 0.5949 REMARK 3 L TENSOR REMARK 3 L11: 2.6569 L22: 7.3351 REMARK 3 L33: 9.6177 L12: -2.8272 REMARK 3 L13: -0.4553 L23: 6.9246 REMARK 3 S TENSOR REMARK 3 S11: 0.6499 S12: -2.8699 S13: -2.4228 REMARK 3 S21: -0.8653 S22: -1.8117 S23: 1.2108 REMARK 3 S31: 1.1301 S32: 0.5264 S33: 0.8093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9610 21.5555 -5.9699 REMARK 3 T TENSOR REMARK 3 T11: 1.8263 T22: 0.9848 REMARK 3 T33: 1.8080 T12: -0.2904 REMARK 3 T13: -0.5021 T23: 0.3443 REMARK 3 L TENSOR REMARK 3 L11: 6.2221 L22: 2.9033 REMARK 3 L33: 4.4355 L12: -2.9012 REMARK 3 L13: 0.5386 L23: -2.8676 REMARK 3 S TENSOR REMARK 3 S11: 0.2216 S12: 0.4964 S13: -1.9863 REMARK 3 S21: 0.4081 S22: 0.8950 S23: 1.7074 REMARK 3 S31: 1.7027 S32: -0.8236 S33: -1.1090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7774 33.2322 -11.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.8738 T22: 0.7077 REMARK 3 T33: 1.3089 T12: 0.0531 REMARK 3 T13: -0.0932 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 6.8269 L22: 8.6544 REMARK 3 L33: 9.2339 L12: -0.7965 REMARK 3 L13: -2.4808 L23: -1.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.4812 S12: 0.3073 S13: 0.2110 REMARK 3 S21: -0.6299 S22: 1.0200 S23: 1.9342 REMARK 3 S31: -0.6504 S32: -0.3942 S33: -1.4597 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6595 44.3788 -19.3458 REMARK 3 T TENSOR REMARK 3 T11: 1.3841 T22: 1.0157 REMARK 3 T33: 1.9071 T12: -0.0219 REMARK 3 T13: -0.3607 T23: 0.5299 REMARK 3 L TENSOR REMARK 3 L11: 5.5337 L22: 0.1413 REMARK 3 L33: 7.3359 L12: 0.3844 REMARK 3 L13: -4.7024 L23: -0.9094 REMARK 3 S TENSOR REMARK 3 S11: 2.3904 S12: 0.8557 S13: -0.4320 REMARK 3 S21: 1.2785 S22: -2.1702 S23: 1.3438 REMARK 3 S31: -1.4351 S32: -0.9594 S33: -0.6919 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN Z AND RESID 355:357) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4592 25.1997 1.9929 REMARK 3 T TENSOR REMARK 3 T11: 1.8659 T22: 1.4856 REMARK 3 T33: 0.9447 T12: -0.1338 REMARK 3 T13: -0.0343 T23: 0.1221 REMARK 3 L TENSOR REMARK 3 L11: 2.1757 L22: 5.1964 REMARK 3 L33: 5.9204 L12: 2.8055 REMARK 3 L13: 0.4117 L23: 0.9955 REMARK 3 S TENSOR REMARK 3 S11: -0.2255 S12: -3.4178 S13: 0.6466 REMARK 3 S21: 1.8068 S22: -0.0545 S23: 0.0002 REMARK 3 S31: -0.2209 S32: 2.3358 S33: 0.9205 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN Z AND RESID 2:31) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1946 27.8267 -16.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.7670 T22: 0.6837 REMARK 3 T33: 0.7173 T12: 0.0677 REMARK 3 T13: -0.0098 T23: -0.2206 REMARK 3 L TENSOR REMARK 3 L11: 0.8527 L22: 6.4132 REMARK 3 L33: 7.0062 L12: 1.9533 REMARK 3 L13: 0.5815 L23: -1.6321 REMARK 3 S TENSOR REMARK 3 S11: 0.1787 S12: 0.5769 S13: -0.6524 REMARK 3 S21: -0.8333 S22: 0.1718 S23: 0.4801 REMARK 3 S31: 0.8658 S32: 0.0788 S33: -0.3267 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN Z AND RESID 32:37) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3846 25.2421 -1.8196 REMARK 3 T TENSOR REMARK 3 T11: 1.1552 T22: 0.5186 REMARK 3 T33: 0.9992 T12: -0.0147 REMARK 3 T13: 0.0140 T23: 0.1262 REMARK 3 L TENSOR REMARK 3 L11: 2.8718 L22: 4.6716 REMARK 3 L33: 7.9957 L12: -2.0225 REMARK 3 L13: -2.8587 L23: 4.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.5235 S12: 0.1906 S13: -0.8320 REMARK 3 S21: 0.4073 S22: -0.1803 S23: 0.8720 REMARK 3 S31: 0.2362 S32: 0.4172 S33: 0.9808 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN Z AND RESID 38:51) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3652 19.9443 7.8541 REMARK 3 T TENSOR REMARK 3 T11: 1.2871 T22: 1.0750 REMARK 3 T33: 1.0840 T12: -0.4336 REMARK 3 T13: 0.0321 T23: 0.2928 REMARK 3 L TENSOR REMARK 3 L11: 5.0227 L22: 3.1348 REMARK 3 L33: 3.6687 L12: -1.3813 REMARK 3 L13: -2.3530 L23: -0.2474 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -1.1335 S13: -0.1656 REMARK 3 S21: 0.6767 S22: 0.7119 S23: 2.0675 REMARK 3 S31: 2.3544 S32: -1.9772 S33: -0.5350 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN Z AND RESID 52:71) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9482 15.2675 -3.2037 REMARK 3 T TENSOR REMARK 3 T11: 1.7167 T22: 0.5547 REMARK 3 T33: 1.0636 T12: 0.0730 REMARK 3 T13: 0.0043 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 6.1755 L22: 3.3709 REMARK 3 L33: 4.4845 L12: -1.4552 REMARK 3 L13: 0.3800 L23: 0.4286 REMARK 3 S TENSOR REMARK 3 S11: -0.2003 S12: 0.4008 S13: -1.5557 REMARK 3 S21: 0.3991 S22: -0.1758 S23: 0.4556 REMARK 3 S31: 2.4895 S32: -0.0184 S33: 0.5090 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN Z AND RESID 72:85) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2080 32.5129 1.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.5870 T22: 0.6214 REMARK 3 T33: 0.5910 T12: -0.0252 REMARK 3 T13: 0.0175 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 4.6469 L22: 7.4619 REMARK 3 L33: 7.2038 L12: 2.2338 REMARK 3 L13: 1.6863 L23: -2.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: -0.7990 S13: -0.1945 REMARK 3 S21: 0.7869 S22: 0.0013 S23: 0.5723 REMARK 3 S31: -0.0296 S32: 0.4268 S33: -0.0894 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN Z AND RESID 86:103) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2770 37.6797 5.6434 REMARK 3 T TENSOR REMARK 3 T11: 1.3673 T22: 1.0324 REMARK 3 T33: 1.2539 T12: 0.0828 REMARK 3 T13: 0.2370 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 3.5511 L22: 4.9939 REMARK 3 L33: 4.3039 L12: 1.6016 REMARK 3 L13: -0.0105 L23: 0.8542 REMARK 3 S TENSOR REMARK 3 S11: -0.3746 S12: -1.0424 S13: -0.0936 REMARK 3 S21: 0.8515 S22: 0.0975 S23: -0.0052 REMARK 3 S31: -0.4364 S32: -0.3043 S33: 0.1362 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN Z AND RESID 104:111) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9094 26.5482 10.2821 REMARK 3 T TENSOR REMARK 3 T11: 1.7328 T22: 2.2931 REMARK 3 T33: 1.6130 T12: -0.4879 REMARK 3 T13: 0.2726 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 7.5371 L22: 3.4751 REMARK 3 L33: 3.4383 L12: 2.6452 REMARK 3 L13: 2.4565 L23: 3.4520 REMARK 3 S TENSOR REMARK 3 S11: 0.8123 S12: 0.9833 S13: 1.0596 REMARK 3 S21: 0.9827 S22: 0.5649 S23: 1.8541 REMARK 3 S31: 1.4945 S32: -2.3367 S33: -1.7982 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN Z AND RESID 112:124) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6113 25.9209 3.2360 REMARK 3 T TENSOR REMARK 3 T11: 1.5019 T22: 1.5393 REMARK 3 T33: 1.6769 T12: -0.1714 REMARK 3 T13: 0.3425 T23: 0.2443 REMARK 3 L TENSOR REMARK 3 L11: 8.4944 L22: 2.2104 REMARK 3 L33: 9.6816 L12: 0.5276 REMARK 3 L13: -5.1345 L23: -3.0959 REMARK 3 S TENSOR REMARK 3 S11: 2.0565 S12: 1.7460 S13: 2.5671 REMARK 3 S21: 1.5023 S22: -0.7409 S23: 1.9372 REMARK 3 S31: -0.0807 S32: -2.6438 S33: -1.1595 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN Z AND RESID 125:144) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0842 20.5378 6.0342 REMARK 3 T TENSOR REMARK 3 T11: 1.4471 T22: 0.6327 REMARK 3 T33: 0.7254 T12: 0.1436 REMARK 3 T13: -0.1497 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 5.7193 L22: 5.2115 REMARK 3 L33: 5.5445 L12: 2.6294 REMARK 3 L13: 0.2561 L23: -0.7619 REMARK 3 S TENSOR REMARK 3 S11: 0.9812 S12: -0.1458 S13: -0.5515 REMARK 3 S21: 1.1996 S22: -0.3310 S23: -0.5759 REMARK 3 S31: 1.5497 S32: 0.4733 S33: -0.6550 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN Z AND RESID 145:173) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6836 32.5223 -5.6951 REMARK 3 T TENSOR REMARK 3 T11: 0.7287 T22: 0.7449 REMARK 3 T33: 0.6778 T12: 0.0758 REMARK 3 T13: -0.0418 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 3.3128 L22: 4.6524 REMARK 3 L33: 6.3851 L12: 2.3007 REMARK 3 L13: -0.9339 L23: -2.3903 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: -0.0404 S13: 0.0950 REMARK 3 S21: 0.2494 S22: -0.1201 S23: -0.1187 REMARK 3 S31: -0.1796 S32: 0.9069 S33: -0.0393 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN Z AND RESID 174:195) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4816 27.2657 -14.5337 REMARK 3 T TENSOR REMARK 3 T11: 0.7321 T22: 0.5464 REMARK 3 T33: 0.5536 T12: 0.0291 REMARK 3 T13: -0.1057 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 5.8588 L22: 8.8480 REMARK 3 L33: 6.5078 L12: -2.4420 REMARK 3 L13: -0.8130 L23: 0.1706 REMARK 3 S TENSOR REMARK 3 S11: 0.2205 S12: 0.0080 S13: -0.6612 REMARK 3 S21: 0.5953 S22: -0.2884 S23: -0.1018 REMARK 3 S31: 1.0782 S32: 0.0602 S33: 0.0489 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN Z AND RESID 196:213) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5658 40.8377 -23.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.7874 T22: 0.9799 REMARK 3 T33: 0.7332 T12: 0.0439 REMARK 3 T13: 0.0518 T23: -0.1570 REMARK 3 L TENSOR REMARK 3 L11: 7.8762 L22: 3.8905 REMARK 3 L33: 6.1130 L12: -3.3856 REMARK 3 L13: -4.2470 L23: -0.7867 REMARK 3 S TENSOR REMARK 3 S11: 0.9938 S12: 0.8893 S13: -0.0125 REMARK 3 S21: -1.0470 S22: -1.2406 S23: -0.1425 REMARK 3 S31: -0.2711 S32: 0.3039 S33: 0.1811 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN Z AND RESID 214:227) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3469 46.7522 -12.0616 REMARK 3 T TENSOR REMARK 3 T11: 0.8216 T22: 0.5136 REMARK 3 T33: 0.7328 T12: -0.0624 REMARK 3 T13: 0.0618 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 2.1358 L22: 2.4926 REMARK 3 L33: 5.7588 L12: -2.4004 REMARK 3 L13: -0.9844 L23: 1.1453 REMARK 3 S TENSOR REMARK 3 S11: 0.1911 S12: -0.5582 S13: 0.0382 REMARK 3 S21: 0.1977 S22: -0.0009 S23: 0.5716 REMARK 3 S31: -1.2641 S32: 0.3453 S33: -0.2824 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN Z AND RESID 228:244) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2416 51.2672 -18.9414 REMARK 3 T TENSOR REMARK 3 T11: 1.1104 T22: 0.5660 REMARK 3 T33: 0.8567 T12: 0.0983 REMARK 3 T13: 0.1052 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.3608 L22: 5.8206 REMARK 3 L33: 3.5263 L12: -0.8435 REMARK 3 L13: 2.6534 L23: -0.4842 REMARK 3 S TENSOR REMARK 3 S11: 0.3591 S12: 0.8246 S13: -0.1092 REMARK 3 S21: -0.2255 S22: -0.0501 S23: 1.2010 REMARK 3 S31: -1.0827 S32: -0.5638 S33: -0.3991 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN Z AND RESID 245:267) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9317 60.1604 -18.7257 REMARK 3 T TENSOR REMARK 3 T11: 1.2331 T22: 0.5884 REMARK 3 T33: 1.0396 T12: 0.0082 REMARK 3 T13: 0.1012 T23: 0.1256 REMARK 3 L TENSOR REMARK 3 L11: 7.5615 L22: 5.5869 REMARK 3 L33: 7.5100 L12: -2.4881 REMARK 3 L13: 1.6575 L23: 0.2560 REMARK 3 S TENSOR REMARK 3 S11: 0.9231 S12: 0.4466 S13: 2.1466 REMARK 3 S21: -0.6358 S22: -0.4814 S23: -0.0105 REMARK 3 S31: -1.6012 S32: 0.1730 S33: -0.3183 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN Z AND RESID 268:277) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4252 57.2448 -5.6165 REMARK 3 T TENSOR REMARK 3 T11: 1.7390 T22: 0.7260 REMARK 3 T33: 1.0319 T12: -0.0748 REMARK 3 T13: 0.2658 T23: -0.2557 REMARK 3 L TENSOR REMARK 3 L11: 5.3617 L22: 5.1800 REMARK 3 L33: 4.2830 L12: 1.9089 REMARK 3 L13: 4.2415 L23: 3.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.9660 S12: -0.5074 S13: 0.6205 REMARK 3 S21: 2.2766 S22: 0.9886 S23: 1.3961 REMARK 3 S31: -3.0586 S32: 0.4620 S33: 0.0649 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN Z AND RESID 278:300) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8727 40.3909 -1.2135 REMARK 3 T TENSOR REMARK 3 T11: 0.6027 T22: 0.9606 REMARK 3 T33: 0.6363 T12: -0.1558 REMARK 3 T13: 0.0015 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 2.9885 L22: 5.6036 REMARK 3 L33: 9.2080 L12: 2.2686 REMARK 3 L13: 1.6251 L23: -2.2149 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: -0.0284 S13: 0.6726 REMARK 3 S21: 0.4571 S22: -0.4923 S23: -0.9627 REMARK 3 S31: -1.0568 S32: 2.0424 S33: 0.2850 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN Z AND RESID 301:310) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1757 52.7441 -1.1518 REMARK 3 T TENSOR REMARK 3 T11: 1.3894 T22: 1.1225 REMARK 3 T33: 0.9632 T12: -0.5094 REMARK 3 T13: -0.1229 T23: -0.2140 REMARK 3 L TENSOR REMARK 3 L11: 7.3539 L22: 1.8233 REMARK 3 L33: 1.6010 L12: -1.3436 REMARK 3 L13: -1.9386 L23: -0.9931 REMARK 3 S TENSOR REMARK 3 S11: 0.3512 S12: -0.3573 S13: 1.1968 REMARK 3 S21: 0.6034 S22: 0.0553 S23: -0.2716 REMARK 3 S31: -2.2295 S32: 1.8281 S33: -0.4460 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN Z AND RESID 311:328) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2488 38.0484 8.9014 REMARK 3 T TENSOR REMARK 3 T11: 0.9178 T22: 0.9690 REMARK 3 T33: 0.7518 T12: -0.1800 REMARK 3 T13: -0.0167 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 0.9705 L22: 5.5078 REMARK 3 L33: 9.9618 L12: -1.2860 REMARK 3 L13: 1.5979 L23: -1.5302 REMARK 3 S TENSOR REMARK 3 S11: 0.6833 S12: -0.0885 S13: 0.1882 REMARK 3 S21: 0.8186 S22: -0.6616 S23: -0.2940 REMARK 3 S31: -0.5034 S32: 1.4001 S33: -0.0864 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: (CHAIN Z AND RESID 329:339) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1844 29.8721 15.6501 REMARK 3 T TENSOR REMARK 3 T11: 1.1377 T22: 0.9717 REMARK 3 T33: 0.7735 T12: -0.0444 REMARK 3 T13: -0.0846 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 3.0946 L22: 8.9267 REMARK 3 L33: 2.7262 L12: 3.6848 REMARK 3 L13: -1.4045 L23: 0.9125 REMARK 3 S TENSOR REMARK 3 S11: 0.3527 S12: -1.0915 S13: -1.1718 REMARK 3 S21: 2.3603 S22: 0.4419 S23: 0.1372 REMARK 3 S31: 1.9319 S32: 0.5402 S33: -0.8651 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: (CHAIN Z AND RESID 340:346) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9115 20.7257 11.8805 REMARK 3 T TENSOR REMARK 3 T11: 1.4051 T22: 1.5785 REMARK 3 T33: 1.2640 T12: 0.4896 REMARK 3 T13: -0.1652 T23: 0.1943 REMARK 3 L TENSOR REMARK 3 L11: 5.0931 L22: 6.9121 REMARK 3 L33: 7.5945 L12: 4.4338 REMARK 3 L13: -6.1982 L23: -5.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.7653 S12: -2.3757 S13: -5.3740 REMARK 3 S21: 0.0133 S22: -1.7104 S23: -1.5456 REMARK 3 S31: 0.4778 S32: 2.6530 S33: 0.8152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.730 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.72 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 7.0, 10 MM REMARK 280 POTASSIUM CHLORIDE, 2-4% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.30600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.48800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.48800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.45900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.48800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.48800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.15300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.48800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.48800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.45900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.48800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.48800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.15300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.30600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 1 REMARK 465 MET Z 347 REMARK 465 PRO Z 348 REMARK 465 ALA Z 349 REMARK 465 HIS Z 350 REMARK 465 SER Z 351 REMARK 465 ARG Z 352 REMARK 465 GLU Z 353 REMARK 465 ASN Z 354 REMARK 465 GLN Z 358 REMARK 465 DT A 13 REMARK 465 DC E 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE Z 357 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 P DG B 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN Z 4 99.65 -61.47 REMARK 500 TYR Z 22 40.52 -105.52 REMARK 500 VAL Z 112 -70.34 -86.67 REMARK 500 TYR Z 149 -118.64 -138.18 REMARK 500 CYS Z 224 -169.03 -119.75 REMARK 500 ASN Z 246 38.61 -97.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD1 REMARK 620 2 ASP Z 171 OD2 83.0 REMARK 620 3 ASP Z 173 OD1 130.4 89.7 REMARK 620 4 HOH Z 513 O 94.3 175.0 88.8 REMARK 620 5 DG B 1 OP3 155.9 95.3 73.5 88.8 REMARK 620 6 DG B 1 OP2 86.9 83.1 140.9 101.0 69.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 152 OD2 REMARK 620 2 HOH Z 525 O 83.2 REMARK 620 3 HOH Z 526 O 86.8 89.4 REMARK 620 4 DG B 1 OP2 108.8 161.5 104.9 REMARK 620 5 HOH B 102 O 85.0 85.8 170.9 81.5 REMARK 620 6 DA E 2 O3' 174.0 97.4 87.2 72.1 101.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA Z 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Z 222 O REMARK 620 2 SER Z 229 OG 83.8 REMARK 620 3 ILE Z 233 O 89.5 80.6 REMARK 620 4 HOH Z 547 O 85.9 98.5 175.4 REMARK 620 5 DT A 4 OP2 157.3 118.8 91.9 92.4 REMARK 620 6 HOH A 101 O 94.4 167.3 112.1 68.8 64.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA Z 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UZV RELATED DB: PDB REMARK 900 RELATED ID: 5V04 RELATED DB: PDB REMARK 900 RELATED ID: 5V05 RELATED DB: PDB REMARK 900 RELATED ID: 5V06 RELATED DB: PDB REMARK 900 RELATED ID: 5V07 RELATED DB: PDB REMARK 900 RELATED ID: 5V08 RELATED DB: PDB REMARK 900 RELATED ID: 5V09 RELATED DB: PDB REMARK 900 RELATED ID: 5V0A RELATED DB: PDB REMARK 900 RELATED ID: 5V0B RELATED DB: PDB REMARK 900 RELATED ID: 5V0C RELATED DB: PDB REMARK 900 RELATED ID: 5V0E RELATED DB: PDB DBREF 5V0D Z 1 352 UNP Q9UQ84 EXO1_HUMAN 1 352 DBREF 5V0D A 1 13 PDB 5V0D 5V0D 1 13 DBREF 5V0D B 1 9 PDB 5V0D 5V0D 1 9 DBREF 5V0D E 1 2 PDB 5V0D 5V0D 1 2 SEQADV 5V0D GLU Z 353 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0D ASN Z 354 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0D LEU Z 355 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0D TYR Z 356 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0D PHE Z 357 UNP Q9UQ84 EXPRESSION TAG SEQADV 5V0D GLN Z 358 UNP Q9UQ84 EXPRESSION TAG SEQRES 1 Z 358 MET GLY ILE GLN GLY LEU LEU GLN PHE ILE LYS GLU ALA SEQRES 2 Z 358 SER GLU PRO ILE HIS VAL ARG LYS TYR LYS GLY GLN VAL SEQRES 3 Z 358 VAL ALA VAL ASP THR TYR CYS TRP LEU HIS LYS GLY ALA SEQRES 4 Z 358 ILE ALA CYS ALA GLU LYS LEU ALA LYS GLY GLU PRO THR SEQRES 5 Z 358 ASP ARG TYR VAL GLY PHE CYS MET LYS PHE VAL ASN MET SEQRES 6 Z 358 LEU LEU SER HIS GLY ILE LYS PRO ILE LEU VAL PHE ASP SEQRES 7 Z 358 GLY CYS THR LEU PRO SER LYS LYS GLU VAL GLU ARG SER SEQRES 8 Z 358 ARG ARG GLU ARG ARG GLN ALA ASN LEU LEU LYS GLY LYS SEQRES 9 Z 358 GLN LEU LEU ARG GLU GLY LYS VAL SER GLU ALA ARG GLU SEQRES 10 Z 358 CYS PHE THR ARG SER ILE ASN ILE THR HIS ALA MET ALA SEQRES 11 Z 358 HIS LYS VAL ILE LYS ALA ALA ARG SER GLN GLY VAL ASP SEQRES 12 Z 358 CYS LEU VAL ALA PRO TYR GLU ALA ASP ALA GLN LEU ALA SEQRES 13 Z 358 TYR LEU ASN LYS ALA GLY ILE VAL GLN ALA ILE ILE THR SEQRES 14 Z 358 GLU ASP SER ASP LEU LEU ALA PHE GLY CYS LYS LYS VAL SEQRES 15 Z 358 ILE LEU LYS MET ASP GLN PHE GLY ASN GLY LEU GLU ILE SEQRES 16 Z 358 ASP GLN ALA ARG LEU GLY MET CYS ARG GLN LEU GLY ASP SEQRES 17 Z 358 VAL PHE THR GLU GLU LYS PHE ARG TYR MET CYS ILE LEU SEQRES 18 Z 358 SER GLY CYS ASP TYR LEU SER SER LEU ARG GLY ILE GLY SEQRES 19 Z 358 LEU ALA LYS ALA CYS LYS VAL LEU ARG LEU ALA ASN ASN SEQRES 20 Z 358 PRO ASP ILE VAL LYS VAL ILE LYS LYS ILE GLY HIS TYR SEQRES 21 Z 358 LEU LYS MET ASN ILE THR VAL PRO GLU ASP TYR ILE ASN SEQRES 22 Z 358 GLY PHE ILE ARG ALA ASN ASN THR PHE LEU TYR GLN LEU SEQRES 23 Z 358 VAL PHE ASP PRO ILE LYS ARG LYS LEU ILE PRO LEU ASN SEQRES 24 Z 358 ALA TYR GLU ASP ASP VAL ASP PRO GLU THR LEU SER TYR SEQRES 25 Z 358 ALA GLY GLN TYR VAL ASP ASP SER ILE ALA LEU GLN ILE SEQRES 26 Z 358 ALA LEU GLY ASN LYS ASP ILE ASN THR PHE GLU GLN ILE SEQRES 27 Z 358 ASP ASP TYR ASN PRO ASP THR ALA MET PRO ALA HIS SER SEQRES 28 Z 358 ARG GLU ASN LEU TYR PHE GLN SEQRES 1 A 13 DC DG DC DT DA DG DT DA DC DT DC DA DT SEQRES 1 B 9 DG DT DA DC DT DA DG DC DG SEQRES 1 E 3 DC DT DA HET MG Z 401 1 HET MG Z 402 1 HET NA Z 403 1 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 NA NA 1+ FORMUL 8 HOH *70(H2 O) HELIX 1 AA1 GLY Z 5 ILE Z 10 1 6 HELIX 2 AA2 ARG Z 20 LYS Z 23 5 4 HELIX 3 AA3 THR Z 31 ALA Z 41 1 11 HELIX 4 AA4 CYS Z 42 GLY Z 49 1 8 HELIX 5 AA5 ASP Z 53 HIS Z 69 1 17 HELIX 6 AA6 LEU Z 82 SER Z 84 5 3 HELIX 7 AA7 LYS Z 85 ARG Z 108 1 24 HELIX 8 AA8 LYS Z 111 ARG Z 121 1 11 HELIX 9 AA9 THR Z 126 SER Z 139 1 14 HELIX 10 AB1 GLU Z 150 ALA Z 161 1 12 HELIX 11 AB2 SER Z 172 PHE Z 177 1 6 HELIX 12 AB3 ALA Z 198 CYS Z 203 5 6 HELIX 13 AB4 THR Z 211 GLY Z 223 1 13 HELIX 14 AB5 GLY Z 234 LEU Z 244 1 11 HELIX 15 AB6 ASP Z 249 LYS Z 256 1 8 HELIX 16 AB7 LYS Z 256 LYS Z 262 1 7 HELIX 17 AB8 PRO Z 268 GLN Z 285 1 18 HELIX 18 AB9 ASP Z 306 LEU Z 310 5 5 HELIX 19 AC1 ASP Z 318 LEU Z 327 1 10 SHEET 1 AA1 7 SER Z 14 HIS Z 18 0 SHEET 2 AA1 7 ASN Z 191 ASP Z 196 -1 O GLY Z 192 N ILE Z 17 SHEET 3 AA1 7 LYS Z 181 LEU Z 184 -1 N LEU Z 184 O LEU Z 193 SHEET 4 AA1 7 ALA Z 166 ILE Z 168 1 N ILE Z 167 O ILE Z 183 SHEET 5 AA1 7 VAL Z 26 ASP Z 30 1 N ALA Z 28 O ILE Z 168 SHEET 6 AA1 7 LYS Z 72 PHE Z 77 1 O ILE Z 74 N VAL Z 29 SHEET 7 AA1 7 CYS Z 144 VAL Z 146 1 O LEU Z 145 N LEU Z 75 SHEET 1 AA2 2 LEU Z 286 ASP Z 289 0 SHEET 2 AA2 2 LYS Z 294 PRO Z 297 -1 O ILE Z 296 N VAL Z 287 LINK OD1 ASP Z 152 MG MG Z 401 1555 1555 2.09 LINK OD2 ASP Z 152 MG MG Z 402 1555 1555 2.11 LINK OD2 ASP Z 171 MG MG Z 401 1555 1555 2.07 LINK OD1 ASP Z 173 MG MG Z 401 1555 1555 2.10 LINK O SER Z 222 NA NA Z 403 1555 1555 2.41 LINK OG SER Z 229 NA NA Z 403 1555 1555 2.46 LINK O ILE Z 233 NA NA Z 403 1555 1555 2.53 LINK MG MG Z 401 O HOH Z 513 1555 1555 2.13 LINK MG MG Z 401 OP3 DG B 1 1555 1555 2.07 LINK MG MG Z 401 OP2 DG B 1 1555 1555 2.14 LINK MG MG Z 402 O HOH Z 525 1555 1555 2.14 LINK MG MG Z 402 O HOH Z 526 1555 1555 2.06 LINK MG MG Z 402 OP2 DG B 1 1555 1555 2.14 LINK MG MG Z 402 O HOH B 102 1555 1555 2.09 LINK MG MG Z 402 O3' DA E 2 1555 1555 2.20 LINK NA NA Z 403 O HOH Z 547 1555 1555 2.46 LINK NA NA Z 403 OP2 DT A 4 1555 1555 2.43 LINK NA NA Z 403 O HOH A 101 1555 1555 2.42 SITE 1 AC1 5 DG B 1 ASP Z 152 ASP Z 171 ASP Z 173 SITE 2 AC1 5 HOH Z 513 SITE 1 AC2 6 DG B 1 HOH B 102 DA E 2 ASP Z 152 SITE 2 AC2 6 HOH Z 525 HOH Z 526 SITE 1 AC3 6 DT A 4 HOH A 101 SER Z 222 SER Z 229 SITE 2 AC3 6 ILE Z 233 HOH Z 547 CRYST1 72.976 72.976 180.612 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005537 0.00000