HEADER RNA 28-FEB-17 5V0H TITLE RNA DUPLEX WITH 2-MEIMPG ANALOGUE BOUND-ONE BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, ANALOGUE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 7 04-OCT-23 5V0H 1 LINK REVDAT 6 27-NOV-19 5V0H 1 REMARK REVDAT 5 14-MAR-18 5V0H 1 JRNL REVDAT 4 21-FEB-18 5V0H 1 JRNL REVDAT 3 20-SEP-17 5V0H 1 REMARK REVDAT 2 29-MAR-17 5V0H 1 CRYST1 REVDAT 1 08-MAR-17 5V0H 0 JRNL AUTH W.ZHANG,C.P.TAM,L.ZHOU,S.S.OH,J.WANG,J.W.SZOSTAK JRNL TITL STRUCTURAL RATIONALE FOR THE ENHANCED CATALYSIS OF JRNL TITL 2 NONENZYMATIC RNA PRIMER EXTENSION BY A DOWNSTREAM JRNL TITL 3 OLIGONUCLEOTIDE. JRNL REF J. AM. CHEM. SOC. V. 140 2829 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29411978 JRNL DOI 10.1021/JACS.7B11750 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 6924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 644 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.765 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 780 ; 0.026 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 350 ; 0.073 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1208 ; 2.686 ; 1.858 REMARK 3 BOND ANGLES OTHERS (DEGREES): 840 ; 3.945 ; 3.229 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 136 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 402 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 152 ; 0.002 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 4.651 ; 4.609 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 780 ; 4.652 ; 4.616 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1209 ; 6.548 ; 6.891 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1124 ; 9.152 ;45.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1125 ; 9.162 ;45.957 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5V0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 10.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : 0.43400 REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HBX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8305 M MALONIC ACID, 0.25 M AMMONIUM REMARK 280 CITRATE TRIBASIC, 0.12 M SUCCINIC ACID, 0.3 M DL-MALIC ACID, 0.4 REMARK 280 M SODIUM ACETATE TRIHYDRATE, 0.5 M SODIUM FORMATE, AND 0.16 M REMARK 280 AMMONIUM TARTRATE DIBASIC, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 103 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP1 G A 15 O3 8OS A 101 2775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 3 O3' LCG A 4 P 0.090 REMARK 500 LCC B 1 O3' LCC B 2 P 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 A A 5 O3' - P - OP2 ANGL. DEV. = 11.5 DEGREES REMARK 500 U A 7 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 U A 8 O5' - P - OP2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LCC B 2 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 C B 6 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 15 O3' REMARK 620 2 G A 15 O2' 68.9 REMARK 620 3 G A 15 O3' 0.0 68.9 REMARK 620 4 G A 15 O2' 68.9 0.0 68.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 15 O3' REMARK 620 2 G B 15 O2' 70.4 REMARK 620 3 G B 15 O3' 0.0 70.4 REMARK 620 4 G B 15 O2' 70.4 0.0 70.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8OS A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8OS A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V0O RELATED DB: PDB REMARK 900 RELATED ID: 5UX3 RELATED DB: PDB REMARK 900 RELATED ID: 5UZ6 RELATED DB: PDB REMARK 900 RELATED ID: 5V0J RELATED DB: PDB REMARK 900 RELATED ID: 5V0K RELATED DB: PDB DBREF 5V0H A 1 15 PDB 5V0H 5V0H 1 15 DBREF 5V0H B 1 15 PDB 5V0H 5V0H 1 15 SEQRES 1 A 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 15 G G SEQRES 1 B 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 15 G G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET 8OS A 101 29 HET 8OS A 102 29 HET MG A 103 1 HET MG B 101 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM 8OS 5'-O-[(S)-HYDROXY(4-METHYL-1H-IMIDAZOL-5-YL) HETNAM 2 8OS PHOSPHORYL]GUANOSINE HETNAM MG MAGNESIUM ION FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 3 8OS 2(C14 H18 N7 O7 P) FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *3(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.67 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.66 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.70 LINK O3' LCG A 4 P A A 5 1555 1555 1.54 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.68 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.64 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.66 LINK O3' LCG B 4 P A B 5 1555 1555 1.67 LINK O3' G A 15 MG MG A 103 1555 1555 2.37 LINK O2' G A 15 MG MG A 103 1555 1555 2.27 LINK O3' G A 15 MG MG A 103 1555 3575 2.37 LINK O2' G A 15 MG MG A 103 1555 3575 2.27 LINK O3' G B 15 MG MG B 101 1555 1555 2.34 LINK O2' G B 15 MG MG B 101 1555 1555 2.38 LINK O3' G B 15 MG MG B 101 1555 3575 2.33 LINK O2' G B 15 MG MG B 101 1555 3575 2.38 SITE 1 AC1 4 C A 13 G A 15 LCC B 1 LCC B 2 SITE 1 AC2 3 LCC A 1 LCC A 2 G B 15 SITE 1 AC3 1 G A 15 SITE 1 AC4 1 G B 15 CRYST1 42.852 42.852 83.841 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023336 0.013473 0.000000 0.00000 SCALE2 0.000000 0.026946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011927 0.00000 HETATM 1 O5' LCC A 1 -4.962 31.292 3.514 1.00 57.83 O HETATM 2 C5' LCC A 1 -3.764 30.508 3.297 1.00 55.92 C HETATM 3 C4' LCC A 1 -2.697 31.544 2.900 1.00 58.80 C HETATM 4 O4' LCC A 1 -2.959 32.550 1.794 1.00 51.56 O HETATM 5 C1' LCC A 1 -1.844 33.505 1.936 1.00 54.15 C HETATM 6 N1 LCC A 1 -2.453 34.826 1.857 1.00 50.88 N HETATM 7 C6 LCC A 1 -3.822 34.892 1.993 1.00 50.83 C HETATM 8 C5 LCC A 1 -4.471 36.096 1.914 1.00 53.92 C HETATM 9 C5M LCC A 1 -5.884 36.148 2.050 1.00 58.00 C HETATM 10 C4 LCC A 1 -3.696 37.229 1.673 1.00 53.84 C HETATM 11 N4 LCC A 1 -4.396 38.384 1.582 1.00 55.11 N HETATM 12 N3 LCC A 1 -2.350 37.129 1.546 1.00 47.67 N HETATM 13 C2 LCC A 1 -1.724 35.943 1.644 1.00 46.83 C HETATM 14 O2 LCC A 1 -0.503 35.863 1.515 1.00 53.50 O HETATM 15 C3' LCC A 1 -2.443 32.537 3.965 1.00 53.63 C HETATM 16 C2' LCC A 1 -1.248 33.130 3.293 1.00 52.59 C HETATM 17 O2' LCC A 1 -0.392 31.956 3.145 1.00 66.34 O HETATM 18 O3' LCC A 1 -2.119 31.888 5.191 1.00 54.31 O HETATM 19 C6' LCC A 1 -1.309 30.835 2.730 1.00 66.03 C HETATM 20 O5' LCC A 2 -1.492 33.994 6.835 1.00 40.36 O HETATM 21 C5' LCC A 2 -0.057 33.926 6.848 1.00 46.09 C HETATM 22 C4' LCC A 2 0.299 35.386 6.499 1.00 42.41 C HETATM 23 O4' LCC A 2 -0.264 35.701 5.176 1.00 45.82 O HETATM 24 C1' LCC A 2 -0.392 37.169 5.264 1.00 40.05 C HETATM 25 N1 LCC A 2 -1.746 37.689 5.121 1.00 42.15 N HETATM 26 C6 LCC A 2 -2.832 36.857 5.329 1.00 41.57 C HETATM 27 C5 LCC A 2 -4.114 37.326 5.187 1.00 43.97 C HETATM 28 C5M LCC A 2 -5.207 36.453 5.466 1.00 44.05 C HETATM 29 C4 LCC A 2 -4.254 38.665 4.791 1.00 41.42 C HETATM 30 N4 LCC A 2 -5.478 39.148 4.682 1.00 40.40 N HETATM 31 N3 LCC A 2 -3.198 39.484 4.602 1.00 39.15 N HETATM 32 C2 LCC A 2 -1.936 38.994 4.737 1.00 42.07 C HETATM 33 O2 LCC A 2 -0.979 39.759 4.550 1.00 39.03 O HETATM 34 C3' LCC A 2 -0.307 36.421 7.397 1.00 38.87 C HETATM 35 C2' LCC A 2 0.183 37.529 6.654 1.00 40.30 C HETATM 36 O2' LCC A 2 1.624 37.316 6.553 1.00 40.31 O HETATM 37 O3' LCC A 2 0.259 36.291 8.742 1.00 41.69 O HETATM 38 C6' LCC A 2 1.768 35.758 6.560 1.00 44.45 C HETATM 39 P LCC A 2 -2.360 32.477 6.731 1.00 46.72 P HETATM 40 O1P LCC A 2 -1.670 31.593 7.679 1.00 47.69 O HETATM 41 O2P LCC A 2 -3.804 33.123 6.997 1.00 44.95 O HETATM 42 O5' LCC A 3 -0.171 38.594 9.853 1.00 33.58 O HETATM 43 C5' LCC A 3 1.158 39.097 9.856 1.00 34.26 C HETATM 44 C4' LCC A 3 0.953 40.523 9.394 1.00 32.54 C HETATM 45 O4' LCC A 3 0.310 40.726 8.073 1.00 35.70 O HETATM 46 C1' LCC A 3 -0.323 42.025 8.169 1.00 33.29 C HETATM 47 N1 LCC A 3 -1.791 41.895 8.055 1.00 35.55 N HETATM 48 C6 LCC A 3 -2.440 40.614 8.211 1.00 36.93 C HETATM 49 C5 LCC A 3 -3.788 40.520 7.989 1.00 35.77 C HETATM 50 C5M LCC A 3 -4.374 39.232 8.202 1.00 35.63 C HETATM 51 C4 LCC A 3 -4.462 41.712 7.604 1.00 38.76 C HETATM 52 N4 LCC A 3 -5.783 41.711 7.390 1.00 36.51 N HETATM 53 N3 LCC A 3 -3.830 42.921 7.481 1.00 33.83 N HETATM 54 C2 LCC A 3 -2.506 42.978 7.706 1.00 37.56 C HETATM 55 O2 LCC A 3 -1.936 44.061 7.569 1.00 35.56 O HETATM 56 C3' LCC A 3 0.108 41.312 10.262 1.00 36.50 C HETATM 57 C2' LCC A 3 0.202 42.611 9.426 1.00 36.16 C HETATM 58 O2' LCC A 3 1.593 42.754 9.242 1.00 35.57 O HETATM 59 O3' LCC A 3 0.798 41.448 11.490 1.00 35.17 O HETATM 60 C6' LCC A 3 2.226 41.329 9.421 1.00 35.69 C HETATM 61 P LCC A 3 -0.495 36.993 10.046 1.00 42.73 P HETATM 62 O1P LCC A 3 0.445 36.605 11.089 1.00 41.78 O HETATM 63 O2P LCC A 3 -1.955 36.855 10.133 1.00 39.19 O HETATM 64 P LCG A 4 -0.111 41.681 12.904 1.00 40.47 P HETATM 65 OP1 LCG A 4 0.994 41.611 13.908 1.00 39.74 O HETATM 66 O5' LCG A 4 -0.669 43.228 12.830 1.00 33.55 O HETATM 67 C5' LCG A 4 0.256 44.343 12.758 1.00 37.36 C HETATM 68 C3' LCG A 4 -1.857 45.701 13.293 1.00 36.91 C HETATM 69 C6' LCG A 4 0.118 46.869 12.393 1.00 35.81 C HETATM 70 N9 LCG A 4 -3.562 45.367 10.893 1.00 39.26 N HETATM 71 C8 LCG A 4 -3.627 44.013 10.927 1.00 39.76 C HETATM 72 C4 LCG A 4 -4.748 45.835 10.547 1.00 36.35 C HETATM 73 N7 LCG A 4 -4.858 43.649 10.555 1.00 36.25 N HETATM 74 C5 LCG A 4 -5.559 44.767 10.316 1.00 34.56 C HETATM 75 C6 LCG A 4 -6.815 44.942 9.904 1.00 38.05 C HETATM 76 C2' LCG A 4 -2.320 46.898 12.520 1.00 39.26 C HETATM 77 O6 LCG A 4 -7.598 44.012 9.655 1.00 33.12 O HETATM 78 C4' LCG A 4 -0.613 45.517 12.397 1.00 37.01 C HETATM 79 C1' LCG A 4 -2.414 46.254 11.175 1.00 39.56 C HETATM 80 C2 LCG A 4 -6.418 47.307 9.979 1.00 36.78 C HETATM 81 N1 LCG A 4 -7.242 46.206 9.710 1.00 36.55 N HETATM 82 O4' LCG A 4 -1.289 45.308 11.087 1.00 38.75 O HETATM 83 OP2 LCG A 4 -1.288 40.806 12.899 1.00 37.80 O HETATM 84 N2 LCG A 4 -6.883 48.545 9.797 1.00 37.89 N HETATM 85 N3 LCG A 4 -5.156 47.109 10.368 1.00 33.17 N HETATM 86 O2' LCG A 4 -1.139 47.759 12.472 1.00 41.35 O HETATM 87 O3' LCG A 4 -1.421 46.046 14.595 1.00 41.26 O