HEADER LIGASE 28-FEB-17 5V0I TITLE CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM ESCHERICHIA TITLE 2 COLI COMPLEXED WITH AMP AND TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRYPTOPHANYL-TRNA SYNTHETASE,TRPRS; COMPND 5 EC: 6.1.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7 STR. EDL933; SOURCE 3 ORGANISM_TAXID: 155864; SOURCE 4 GENE: TRPS, Z4737, ECS4226; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS CSGID, TRYPTOPHANYL-TRNA SYNTHETASE, A/B SANDWICH, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MALTSEVA,Y.KIM,R.MULLIGAN,S.G.GRIMSHAW,A.JOACHIMIAK,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 04-OCT-23 5V0I 1 REMARK REVDAT 3 04-DEC-19 5V0I 1 REMARK REVDAT 2 27-SEP-17 5V0I 1 REMARK REVDAT 1 22-MAR-17 5V0I 0 JRNL AUTH N.MALTSEVA,Y.KIM,R.MULLIGAN,S.G.GRIMSHAW,A.JOACHIMIAK, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM JRNL TITL 2 ESCHERICHIA COLI COMPLEXED WITH AMP AND TRYPTOPHAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 52397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9444 - 5.0618 0.99 2891 142 0.1702 0.1842 REMARK 3 2 5.0618 - 4.0186 1.00 2753 156 0.1505 0.1635 REMARK 3 3 4.0186 - 3.5108 1.00 2725 140 0.1731 0.2143 REMARK 3 4 3.5108 - 3.1899 1.00 2717 133 0.2002 0.2185 REMARK 3 5 3.1899 - 2.9614 1.00 2708 136 0.2046 0.2247 REMARK 3 6 2.9614 - 2.7868 1.00 2665 133 0.1976 0.2445 REMARK 3 7 2.7868 - 2.6472 1.00 2737 99 0.2018 0.2686 REMARK 3 8 2.6472 - 2.5320 1.00 2666 141 0.1891 0.2784 REMARK 3 9 2.5320 - 2.4346 1.00 2667 141 0.1908 0.2568 REMARK 3 10 2.4346 - 2.3505 1.00 2633 151 0.1844 0.2504 REMARK 3 11 2.3505 - 2.2771 1.00 2685 136 0.1938 0.2300 REMARK 3 12 2.2771 - 2.2120 1.00 2641 147 0.1988 0.2628 REMARK 3 13 2.2120 - 2.1537 1.00 2641 134 0.2048 0.2567 REMARK 3 14 2.1537 - 2.1012 0.99 2639 135 0.2105 0.2659 REMARK 3 15 2.1012 - 2.0534 1.00 2645 151 0.2239 0.2761 REMARK 3 16 2.0534 - 2.0097 0.99 2617 142 0.2461 0.2926 REMARK 3 17 2.0097 - 1.9695 0.96 2515 152 0.2417 0.2788 REMARK 3 18 1.9695 - 1.9324 0.89 2351 121 0.2750 0.2802 REMARK 3 19 1.9324 - 1.8979 0.72 1907 104 0.3049 0.3321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5448 REMARK 3 ANGLE : 0.931 7392 REMARK 3 CHIRALITY : 0.059 809 REMARK 3 PLANARITY : 0.006 966 REMARK 3 DIHEDRAL : 24.691 2054 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2807 13.7579 13.7664 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.2430 REMARK 3 T33: 0.3539 T12: 0.0162 REMARK 3 T13: -0.0026 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.3067 L22: 1.4332 REMARK 3 L33: 1.3838 L12: 0.1010 REMARK 3 L13: -0.8161 L23: 0.4804 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.1048 S13: -0.3292 REMARK 3 S21: -0.1180 S22: -0.0229 S23: 0.0200 REMARK 3 S31: 0.1657 S32: -0.0380 S33: 0.0988 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9759 4.3588 6.5728 REMARK 3 T TENSOR REMARK 3 T11: 0.4667 T22: 0.4784 REMARK 3 T33: 0.6225 T12: -0.0349 REMARK 3 T13: 0.0230 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 7.9866 L22: 3.2057 REMARK 3 L33: 1.2263 L12: -3.9779 REMARK 3 L13: -1.6253 L23: 1.7218 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: 1.3764 S13: -1.3211 REMARK 3 S21: -0.5260 S22: -0.7087 S23: 0.5489 REMARK 3 S31: 0.0966 S32: -0.4476 S33: 0.4562 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5318 -3.2434 0.0567 REMARK 3 T TENSOR REMARK 3 T11: 0.5047 T22: 0.4390 REMARK 3 T33: 0.4789 T12: 0.0051 REMARK 3 T13: 0.0480 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.7734 L22: 7.1372 REMARK 3 L33: 0.5923 L12: -1.5963 REMARK 3 L13: -0.3569 L23: 2.1796 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: 0.0266 S13: -0.0777 REMARK 3 S21: -0.1455 S22: 0.1123 S23: -0.4632 REMARK 3 S31: 0.0075 S32: 0.1794 S33: -0.2210 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6417 28.1991 11.1477 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.2961 REMARK 3 T33: 0.2767 T12: 0.0380 REMARK 3 T13: -0.0542 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 7.8316 L22: 1.5033 REMARK 3 L33: 4.4874 L12: -2.5264 REMARK 3 L13: -5.6859 L23: 1.5202 REMARK 3 S TENSOR REMARK 3 S11: 0.1796 S12: 0.5879 S13: 0.1572 REMARK 3 S21: -0.3312 S22: -0.1155 S23: 0.0992 REMARK 3 S31: -0.1907 S32: -0.4844 S33: -0.1229 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0927 10.8081 14.7159 REMARK 3 T TENSOR REMARK 3 T11: 1.3226 T22: 1.3410 REMARK 3 T33: 1.1345 T12: -0.2538 REMARK 3 T13: -0.0046 T23: 0.6093 REMARK 3 L TENSOR REMARK 3 L11: 5.7480 L22: 7.8427 REMARK 3 L33: 5.8500 L12: -4.5703 REMARK 3 L13: 3.2714 L23: 1.4941 REMARK 3 S TENSOR REMARK 3 S11: 0.9176 S12: -0.1305 S13: -0.0593 REMARK 3 S21: -0.3868 S22: 1.3121 S23: 0.8724 REMARK 3 S31: -1.0219 S32: -2.1902 S33: -2.1508 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0660 37.4585 41.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.3134 REMARK 3 T33: 0.2678 T12: 0.0041 REMARK 3 T13: -0.0063 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.1834 L22: 3.5835 REMARK 3 L33: 7.8339 L12: -2.7500 REMARK 3 L13: -2.2245 L23: 2.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.3775 S13: 0.0633 REMARK 3 S21: 0.3726 S22: -0.0880 S23: 0.2483 REMARK 3 S31: 0.6228 S32: -0.2947 S33: 0.1198 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6990 28.6392 35.5156 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.3798 REMARK 3 T33: 0.2741 T12: 0.0064 REMARK 3 T13: -0.0009 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.2190 L22: 1.2862 REMARK 3 L33: 1.2674 L12: -0.6691 REMARK 3 L13: -0.2176 L23: 0.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.2790 S13: -0.0273 REMARK 3 S21: 0.2265 S22: 0.0269 S23: 0.0527 REMARK 3 S31: -0.0199 S32: -0.0189 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4586 32.2536 48.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.3811 T22: 0.3952 REMARK 3 T33: 0.4346 T12: 0.0615 REMARK 3 T13: -0.0294 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.3948 L22: 0.6431 REMARK 3 L33: 7.4601 L12: -0.5785 REMARK 3 L13: -5.8364 L23: 0.7921 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -1.2004 S13: 0.9236 REMARK 3 S21: 0.0273 S22: 0.4315 S23: -0.0406 REMARK 3 S31: 0.0540 S32: 1.2328 S33: -0.4897 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1437 37.0910 60.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.3244 T22: 0.3198 REMARK 3 T33: 0.3474 T12: 0.0386 REMARK 3 T13: -0.0198 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 6.4901 L22: 6.6195 REMARK 3 L33: 8.2310 L12: 0.2947 REMARK 3 L13: -1.8842 L23: -1.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -0.0204 S13: 0.0696 REMARK 3 S21: 0.3937 S22: 0.0107 S23: -0.2788 REMARK 3 S31: 0.0225 S32: -0.1435 S33: 0.0352 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6776 44.8090 45.7785 REMARK 3 T TENSOR REMARK 3 T11: 0.6140 T22: 0.4842 REMARK 3 T33: 0.5172 T12: 0.2202 REMARK 3 T13: 0.0627 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.0204 L22: 0.1416 REMARK 3 L33: 5.0317 L12: 0.7286 REMARK 3 L13: -3.7962 L23: -0.8258 REMARK 3 S TENSOR REMARK 3 S11: 0.4671 S12: 0.3350 S13: 0.7981 REMARK 3 S21: 0.1652 S22: -0.1247 S23: -0.0884 REMARK 3 S31: -2.0565 S32: -1.1575 S33: -0.3817 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1352 37.4052 22.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.2454 REMARK 3 T33: 0.2539 T12: -0.0248 REMARK 3 T13: 0.0301 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 9.7633 L22: 4.6721 REMARK 3 L33: 2.7472 L12: -5.0092 REMARK 3 L13: -4.3811 L23: 2.2918 REMARK 3 S TENSOR REMARK 3 S11: 0.3887 S12: 0.2480 S13: 0.5081 REMARK 3 S21: -0.2944 S22: -0.0836 S23: -0.3378 REMARK 3 S31: -0.4435 S32: 0.0437 S33: -0.3045 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5854 29.0155 38.5107 REMARK 3 T TENSOR REMARK 3 T11: 0.5947 T22: 0.6278 REMARK 3 T33: 0.8142 T12: -0.1674 REMARK 3 T13: -0.0624 T23: 0.2037 REMARK 3 L TENSOR REMARK 3 L11: 2.8137 L22: 6.0533 REMARK 3 L33: 5.9987 L12: 1.3703 REMARK 3 L13: -0.0840 L23: -5.7228 REMARK 3 S TENSOR REMARK 3 S11: -1.2080 S12: 0.4772 S13: -0.7613 REMARK 3 S21: -0.1144 S22: -0.5523 S23: -2.2884 REMARK 3 S31: -1.2632 S32: 1.0705 S33: 1.7015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.146 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3N9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 1500, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.37250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.29950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.40350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.29950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.37250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.40350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 109 REMARK 465 PHE A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 LYS A 113 REMARK 465 SER A 114 REMARK 465 ALA A 115 REMARK 465 ARG A 116 REMARK 465 TYR A 117 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASP B 112 REMARK 465 LYS B 113 REMARK 465 SER B 114 REMARK 465 ILE B 179 REMARK 465 PRO B 180 REMARK 465 LYS B 181 REMARK 465 SER B 182 REMARK 465 GLY B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 230 C - N - CD ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO B 230 C - N - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -61.63 -147.34 REMARK 500 MET A 107 52.07 -113.87 REMARK 500 THR A 225 -125.98 -118.36 REMARK 500 ASP A 236 99.42 -164.08 REMARK 500 ALA B 24 -64.14 -146.62 REMARK 500 THR B 225 -121.75 -118.19 REMARK 500 ASP B 236 96.40 -171.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07325 RELATED DB: TARGETTRACK DBREF 5V0I A 1 334 UNP P67589 SYW_ECO57 1 334 DBREF 5V0I B 1 334 UNP P67589 SYW_ECO57 1 334 SEQADV 5V0I SER A -2 UNP P67589 EXPRESSION TAG SEQADV 5V0I ASN A -1 UNP P67589 EXPRESSION TAG SEQADV 5V0I ALA A 0 UNP P67589 EXPRESSION TAG SEQADV 5V0I SER B -2 UNP P67589 EXPRESSION TAG SEQADV 5V0I ASN B -1 UNP P67589 EXPRESSION TAG SEQADV 5V0I ALA B 0 UNP P67589 EXPRESSION TAG SEQRES 1 A 337 SER ASN ALA MET THR LYS PRO ILE VAL PHE SER GLY ALA SEQRES 2 A 337 GLN PRO SER GLY GLU LEU THR ILE GLY ASN TYR MET GLY SEQRES 3 A 337 ALA LEU ARG GLN TRP VAL ASN MET GLN ASP ASP TYR HIS SEQRES 4 A 337 CYS ILE TYR CYS ILE VAL ASP GLN HIS ALA ILE THR VAL SEQRES 5 A 337 ARG GLN ASP ALA GLN LYS LEU ARG LYS ALA THR LEU ASP SEQRES 6 A 337 THR LEU ALA LEU TYR LEU ALA CYS GLY ILE ASP PRO GLU SEQRES 7 A 337 LYS SER THR ILE PHE VAL GLN SER HIS VAL PRO GLU HIS SEQRES 8 A 337 ALA GLN LEU GLY TRP ALA LEU ASN CYS TYR THR TYR PHE SEQRES 9 A 337 GLY GLU LEU SER ARG MET THR GLN PHE LYS ASP LYS SER SEQRES 10 A 337 ALA ARG TYR ALA GLU ASN ILE ASN ALA GLY LEU PHE ASP SEQRES 11 A 337 TYR PRO VAL LEU MET ALA ALA ASP ILE LEU LEU TYR GLN SEQRES 12 A 337 THR ASN LEU VAL PRO VAL GLY GLU ASP GLN LYS GLN HIS SEQRES 13 A 337 LEU GLU LEU SER ARG ASP ILE ALA GLN ARG PHE ASN ALA SEQRES 14 A 337 LEU TYR GLY ASP ILE PHE LYS VAL PRO GLU PRO PHE ILE SEQRES 15 A 337 PRO LYS SER GLY ALA ARG VAL MET SER LEU LEU GLU PRO SEQRES 16 A 337 THR LYS LYS MET SER LYS SER ASP ASP ASN ARG ASN ASN SEQRES 17 A 337 VAL ILE GLY LEU LEU GLU ASP PRO LYS SER VAL VAL LYS SEQRES 18 A 337 LYS ILE LYS ARG ALA VAL THR ASP SER ASP GLU PRO PRO SEQRES 19 A 337 VAL VAL ARG TYR ASP VAL GLN ASN LYS ALA GLY VAL SER SEQRES 20 A 337 ASN LEU LEU ASP ILE LEU SER ALA VAL THR GLY GLN SER SEQRES 21 A 337 ILE PRO GLU LEU GLU LYS GLN PHE GLU GLY LYS MET TYR SEQRES 22 A 337 GLY HIS LEU LYS GLY GLU VAL ALA ASP ALA VAL SER GLY SEQRES 23 A 337 MET LEU THR GLU LEU GLN GLU ARG TYR HIS ARG PHE ARG SEQRES 24 A 337 ASN ASP GLU ALA PHE LEU GLN GLN VAL MET LYS ASP GLY SEQRES 25 A 337 ALA GLU LYS ALA SER ALA HIS ALA SER ARG THR LEU LYS SEQRES 26 A 337 ALA VAL TYR GLU ALA ILE GLY PHE VAL ALA LYS PRO SEQRES 1 B 337 SER ASN ALA MET THR LYS PRO ILE VAL PHE SER GLY ALA SEQRES 2 B 337 GLN PRO SER GLY GLU LEU THR ILE GLY ASN TYR MET GLY SEQRES 3 B 337 ALA LEU ARG GLN TRP VAL ASN MET GLN ASP ASP TYR HIS SEQRES 4 B 337 CYS ILE TYR CYS ILE VAL ASP GLN HIS ALA ILE THR VAL SEQRES 5 B 337 ARG GLN ASP ALA GLN LYS LEU ARG LYS ALA THR LEU ASP SEQRES 6 B 337 THR LEU ALA LEU TYR LEU ALA CYS GLY ILE ASP PRO GLU SEQRES 7 B 337 LYS SER THR ILE PHE VAL GLN SER HIS VAL PRO GLU HIS SEQRES 8 B 337 ALA GLN LEU GLY TRP ALA LEU ASN CYS TYR THR TYR PHE SEQRES 9 B 337 GLY GLU LEU SER ARG MET THR GLN PHE LYS ASP LYS SER SEQRES 10 B 337 ALA ARG TYR ALA GLU ASN ILE ASN ALA GLY LEU PHE ASP SEQRES 11 B 337 TYR PRO VAL LEU MET ALA ALA ASP ILE LEU LEU TYR GLN SEQRES 12 B 337 THR ASN LEU VAL PRO VAL GLY GLU ASP GLN LYS GLN HIS SEQRES 13 B 337 LEU GLU LEU SER ARG ASP ILE ALA GLN ARG PHE ASN ALA SEQRES 14 B 337 LEU TYR GLY ASP ILE PHE LYS VAL PRO GLU PRO PHE ILE SEQRES 15 B 337 PRO LYS SER GLY ALA ARG VAL MET SER LEU LEU GLU PRO SEQRES 16 B 337 THR LYS LYS MET SER LYS SER ASP ASP ASN ARG ASN ASN SEQRES 17 B 337 VAL ILE GLY LEU LEU GLU ASP PRO LYS SER VAL VAL LYS SEQRES 18 B 337 LYS ILE LYS ARG ALA VAL THR ASP SER ASP GLU PRO PRO SEQRES 19 B 337 VAL VAL ARG TYR ASP VAL GLN ASN LYS ALA GLY VAL SER SEQRES 20 B 337 ASN LEU LEU ASP ILE LEU SER ALA VAL THR GLY GLN SER SEQRES 21 B 337 ILE PRO GLU LEU GLU LYS GLN PHE GLU GLY LYS MET TYR SEQRES 22 B 337 GLY HIS LEU LYS GLY GLU VAL ALA ASP ALA VAL SER GLY SEQRES 23 B 337 MET LEU THR GLU LEU GLN GLU ARG TYR HIS ARG PHE ARG SEQRES 24 B 337 ASN ASP GLU ALA PHE LEU GLN GLN VAL MET LYS ASP GLY SEQRES 25 B 337 ALA GLU LYS ALA SER ALA HIS ALA SER ARG THR LEU LYS SEQRES 26 B 337 ALA VAL TYR GLU ALA ILE GLY PHE VAL ALA LYS PRO HET AMP A 401 23 HET TRP A 402 15 HET FMT A 403 3 HET FMT A 404 3 HET AMP B 401 23 HET TRP B 402 15 HET FMT B 403 3 HET FMT B 404 3 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM TRP TRYPTOPHAN HETNAM FMT FORMIC ACID FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 TRP 2(C11 H12 N2 O2) FORMUL 5 FMT 4(C H2 O2) FORMUL 11 HOH *132(H2 O) HELIX 1 AA1 THR A 17 ALA A 24 1 8 HELIX 2 AA2 ALA A 24 ASN A 30 1 7 HELIX 3 AA3 VAL A 42 ILE A 47 1 6 HELIX 4 AA4 ASP A 52 GLY A 71 1 20 HELIX 5 AA5 SER A 83 VAL A 85 5 3 HELIX 6 AA6 PRO A 86 CYS A 97 1 12 HELIX 7 AA7 TYR A 100 ARG A 106 1 7 HELIX 8 AA8 ASN A 122 LEU A 138 1 17 HELIX 9 AA9 GLY A 147 ASP A 149 5 3 HELIX 10 AB1 GLN A 150 GLY A 169 1 20 HELIX 11 AB2 ASN A 202 VAL A 206 5 5 HELIX 12 AB3 ASP A 212 ARG A 222 1 11 HELIX 13 AB4 LYS A 240 GLY A 255 1 16 HELIX 14 AB5 SER A 257 PHE A 265 1 9 HELIX 15 AB6 MET A 269 ASN A 297 1 29 HELIX 16 AB7 ASP A 298 GLY A 329 1 32 HELIX 17 AB8 THR B 17 ALA B 24 1 8 HELIX 18 AB9 ALA B 24 ASN B 30 1 7 HELIX 19 AC1 VAL B 42 ILE B 47 1 6 HELIX 20 AC2 ASP B 52 GLY B 71 1 20 HELIX 21 AC3 SER B 83 VAL B 85 5 3 HELIX 22 AC4 PRO B 86 CYS B 97 1 12 HELIX 23 AC5 TYR B 100 ARG B 106 1 7 HELIX 24 AC6 ARG B 116 ILE B 121 1 6 HELIX 25 AC7 ASN B 122 LEU B 138 1 17 HELIX 26 AC8 GLY B 147 ASP B 149 5 3 HELIX 27 AC9 GLN B 150 GLY B 169 1 20 HELIX 28 AD1 ASN B 202 VAL B 206 5 5 HELIX 29 AD2 ASP B 212 ARG B 222 1 11 HELIX 30 AD3 LYS B 240 GLY B 255 1 16 HELIX 31 AD4 SER B 257 PHE B 265 1 9 HELIX 32 AD5 MET B 269 ASN B 297 1 29 HELIX 33 AD6 ASP B 298 GLY B 329 1 32 SHEET 1 AA1 3 ILE A 5 ALA A 10 0 SHEET 2 AA1 3 HIS A 36 ILE A 41 1 O CYS A 40 N ALA A 10 SHEET 3 AA1 3 THR A 78 VAL A 81 1 O THR A 78 N TYR A 39 SHEET 1 AA2 2 LEU A 143 VAL A 144 0 SHEET 2 AA2 2 GLU A 176 PRO A 177 1 O GLU A 176 N VAL A 144 SHEET 1 AA3 2 MET A 187 SER A 188 0 SHEET 2 AA3 2 GLU A 191 LYS A 195 -1 O LYS A 194 N SER A 188 SHEET 1 AA4 3 ILE B 5 ALA B 10 0 SHEET 2 AA4 3 HIS B 36 ILE B 41 1 O CYS B 40 N ALA B 10 SHEET 3 AA4 3 THR B 78 VAL B 81 1 O THR B 78 N TYR B 39 SHEET 1 AA5 2 LEU B 143 VAL B 144 0 SHEET 2 AA5 2 GLU B 176 PRO B 177 1 O GLU B 176 N VAL B 144 SHEET 1 AA6 2 MET B 187 SER B 188 0 SHEET 2 AA6 2 GLU B 191 LYS B 195 -1 O LYS B 194 N SER B 188 CISPEP 1 GLU A 229 PRO A 230 0 -0.09 CISPEP 2 GLU B 229 PRO B 230 0 -2.53 SITE 1 AC1 10 GLY A 19 ASN A 20 GLY A 23 PRO A 180 SITE 2 AC1 10 ALA A 184 VAL A 186 LYS A 195 MET A 196 SITE 3 AC1 10 LYS A 198 HOH A 537 SITE 1 AC2 8 PHE A 7 GLY A 9 GLN A 11 VAL A 42 SITE 2 AC2 8 HIS A 45 MET A 132 ASP A 135 GLN A 150 SITE 1 AC3 5 HIS A 36 ILE A 38 THR A 78 HIS A 316 SITE 2 AC3 5 HOH A 544 SITE 1 AC4 3 TYR A 100 ARG A 106 GLU B 119 SITE 1 AC5 8 GLY B 19 ASN B 20 ASP B 149 ALA B 184 SITE 2 AC5 8 VAL B 186 LYS B 195 MET B 196 LYS B 198 SITE 1 AC6 10 PHE B 7 GLY B 9 GLN B 11 VAL B 42 SITE 2 AC6 10 HIS B 45 MET B 132 ASP B 135 ILE B 136 SITE 3 AC6 10 GLN B 150 HOH B 506 SITE 1 AC7 4 HIS B 36 ILE B 38 THR B 78 HIS B 316 SITE 1 AC8 5 TYR A 98 TYR A 100 ARG A 163 ARG B 50 SITE 2 AC8 5 ASN B 122 CRYST1 46.745 110.807 128.599 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007776 0.00000