data_5V0K # _entry.id 5V0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V0K pdb_00005v0k 10.2210/pdb5v0k/pdb WWPDB D_1000226715 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5UZ6 PDB . unspecified 5V0H PDB . unspecified 5V0J PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V0K _pdbx_database_status.recvd_initial_deposition_date 2017-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Tam, C.P.' 2 ? 'Szostak, J.W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'RNA duplex with 2-MeImpG analogue bound-3 binding sites' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Szostak, J.W.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5V0K _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.229 _cell.length_a_esd ? _cell.length_b 42.229 _cell.length_b_esd ? _cell.length_c 40.098 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3') ; 4167.598 1 ? ? ? ? 2 non-polymer syn "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine" 427.309 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUC' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5V0K _struct_ref.pdbx_db_accession 5V0K _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5V0K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5V0K _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OS 'RNA linking' n "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine" ? 'C14 H18 N7 O7 P' 427.309 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V0K _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.04 M Lithium chloride, 0.08 M Strontium chloride hexahydrate 0.04 M Sodium cacodylate trihydrate pH 7.0 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride, 0.02 M Magnesium chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5V0K _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5712 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.9 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.54 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.788 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.41 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 536 _reflns_shell.percent_possible_all 94.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.364 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.pdbx_Rsym_value 0.190 _reflns_shell.pdbx_chi_squared 0.517 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.988 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.02 _refine.B_iso_max ? _refine.B_iso_mean 24.074 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5V0K _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 40.10 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5435 _refine.ls_number_reflns_R_free 274 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.48 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.17668 _refine.ls_R_factor_R_free 0.22601 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17431 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5HBX _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.086 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.892 _refine.overall_SU_ML 0.064 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 276 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 366 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 40.10 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.024 0.018 370 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.077 0.024 170 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.937 2.058 571 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.931 3.285 406 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.129 0.200 65 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.024 0.021 194 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.022 70 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.775 2.468 368 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.771 2.475 369 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.176 3.710 572 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.487 23.796 518 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.453 23.734 512 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_R_work 357 _refine_ls_shell.percent_reflns_obs 93.38 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.278 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5V0K _struct.title 'RNA duplex with 2-MeImpG analogue bound-3 binding sites' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V0K _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.697 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.693 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.644 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.563 ? ? metalc1 metalc ? ? A LCC 2 O1P ? ? ? 1_555 D MG . MG ? ? A LCC 2 A MG 103 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc2 metalc ? ? A LCC 2 O1P ? ? ? 1_555 D MG . MG ? ? A LCC 2 A MG 103 2_775 ? ? ? ? ? ? ? 2.043 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 103 A HOH 219 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 103 A HOH 219 3_575 ? ? ? ? ? ? ? 2.217 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A LCG 4 A C 13 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A LCG 4 A C 13 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A LCG 4 A C 13 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 12 N3 ? ? A A 5 A U 12 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 12 O4 ? ? A A 5 A U 12 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 11 N1 ? ? A C 6 A G 11 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 11 O6 ? ? A C 6 A G 11 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 11 N2 ? ? A C 6 A G 11 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 10 N1 ? ? A U 7 A A 10 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? A U 7 A A 10 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 9 N1 ? ? A U 8 A A 9 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 9 N6 ? ? A U 8 A A 9 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 8 N3 ? ? A A 9 A U 8 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 8 O4 ? ? A A 9 A U 8 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 7 N3 ? ? A A 10 A U 7 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 7 O4 ? ? A A 10 A U 7 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 6 N3 ? ? A G 11 A C 6 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 6 O2 ? ? A G 11 A C 6 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 6 N4 ? ? A G 11 A C 6 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 5 N1 ? ? A U 12 A A 5 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 5 N6 ? ? A U 12 A A 5 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 A LCG 4 N1 ? ? A C 13 A LCG 4 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 A LCG 4 O6 ? ? A C 13 A LCG 4 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 A LCG 4 N2 ? ? A C 13 A LCG 4 5_676 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 8OS 101 ? 10 'binding site for residue 8OS A 101' AC2 Software A 8OS 102 ? 8 'binding site for residue 8OS A 102' AC3 Software A MG 103 ? 6 'binding site for residue MG A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LCC A 1 ? LCC A 1 . ? 1_555 ? 2 AC1 10 LCC A 3 ? LCC A 3 . ? 5_675 ? 3 AC1 10 LCG A 4 ? LCG A 4 . ? 5_675 ? 4 AC1 10 C A 13 ? C A 13 . ? 1_554 ? 5 AC1 10 C A 13 ? C A 13 . ? 3_574 ? 6 AC1 10 8OS C . ? 8OS A 102 . ? 1_555 ? 7 AC1 10 HOH E . ? HOH A 207 . ? 1_555 ? 8 AC1 10 HOH E . ? HOH A 217 . ? 1_555 ? 9 AC1 10 HOH E . ? HOH A 220 . ? 1_555 ? 10 AC1 10 HOH E . ? HOH A 224 . ? 5_675 ? 11 AC2 8 LCC A 1 ? LCC A 1 . ? 1_555 ? 12 AC2 8 LCC A 2 ? LCC A 2 . ? 5_675 ? 13 AC2 8 LCC A 2 ? LCC A 2 . ? 1_555 ? 14 AC2 8 LCC A 3 ? LCC A 3 . ? 5_675 ? 15 AC2 8 C A 13 ? C A 13 . ? 3_574 ? 16 AC2 8 8OS B . ? 8OS A 101 . ? 1_555 ? 17 AC2 8 HOH E . ? HOH A 201 . ? 1_555 ? 18 AC2 8 HOH E . ? HOH A 202 . ? 3_574 ? 19 AC3 6 LCC A 2 ? LCC A 2 . ? 3_575 ? 20 AC3 6 LCC A 2 ? LCC A 2 . ? 1_555 ? 21 AC3 6 LCC A 2 ? LCC A 2 . ? 2_775 ? 22 AC3 6 HOH E . ? HOH A 219 . ? 1_555 ? 23 AC3 6 HOH E . ? HOH A 219 . ? 2_775 ? 24 AC3 6 HOH E . ? HOH A 219 . ? 3_575 ? # _atom_sites.entry_id 5V0K _atom_sites.fract_transf_matrix[1][1] 0.023680 _atom_sites.fract_transf_matrix[1][2] 0.013672 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027344 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024939 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8OS 1 101 1 8OS rG A . C 2 8OS 1 102 2 8OS rG A . D 3 MG 1 103 1 MG MG A . E 4 HOH 1 201 24 HOH HOH A . E 4 HOH 2 202 8 HOH HOH A . E 4 HOH 3 203 22 HOH HOH A . E 4 HOH 4 204 25 HOH HOH A . E 4 HOH 5 205 7 HOH HOH A . E 4 HOH 6 206 15 HOH HOH A . E 4 HOH 7 207 13 HOH HOH A . E 4 HOH 8 208 11 HOH HOH A . E 4 HOH 9 209 30 HOH HOH A . E 4 HOH 10 210 9 HOH HOH A . E 4 HOH 11 211 1 HOH HOH A . E 4 HOH 12 212 4 HOH HOH A . E 4 HOH 13 213 14 HOH HOH A . E 4 HOH 14 214 16 HOH HOH A . E 4 HOH 15 215 28 HOH HOH A . E 4 HOH 16 216 18 HOH HOH A . E 4 HOH 17 217 29 HOH HOH A . E 4 HOH 18 218 23 HOH HOH A . E 4 HOH 19 219 12 HOH HOH A . E 4 HOH 20 220 3 HOH HOH A . E 4 HOH 21 221 10 HOH HOH A . E 4 HOH 22 222 26 HOH HOH A . E 4 HOH 23 223 31 HOH HOH A . E 4 HOH 24 224 5 HOH HOH A . E 4 HOH 25 225 27 HOH HOH A . E 4 HOH 26 226 21 HOH HOH A . E 4 HOH 27 227 2 HOH HOH A . E 4 HOH 28 228 6 HOH HOH A . E 4 HOH 29 229 17 HOH HOH A . E 4 HOH 30 230 20 HOH HOH A . E 4 HOH 31 231 19 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE 7 ? 1 'SSA (A^2)' 6680 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 73.1427735528 0.0000000000 0.0000000000 -1.0000000000 40.0980000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 103 ? D MG . 2 1 A HOH 209 ? E HOH . 3 1 A HOH 213 ? E HOH . 4 1 A HOH 214 ? E HOH . 5 1 A HOH 228 ? E HOH . 6 1 A HOH 229 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1P ? A LCC 2 ? A LCC 2 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O1P ? A LCC 2 ? A LCC 2 ? 1_555 0.0 ? 2 O1P ? A LCC 2 ? A LCC 2 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 219 ? 1_555 83.2 ? 3 O1P ? A LCC 2 ? A LCC 2 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 219 ? 1_555 83.2 ? 4 O1P ? A LCC 2 ? A LCC 2 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 219 ? 3_575 91.0 ? 5 O1P ? A LCC 2 ? A LCC 2 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 219 ? 3_575 91.0 ? 6 O ? E HOH . ? A HOH 219 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 219 ? 3_575 88.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-08 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-11-27 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? 1.697 1.607 0.090 0.012 Y 2 1 "O3'" A LCC 2 ? ? P A LCC 3 ? ? 1.693 1.607 0.086 0.012 Y 3 1 "O3'" A U 12 ? ? P A C 13 ? ? 1.527 1.607 -0.080 0.012 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OS O1 O N N 1 8OS C1 C N N 2 8OS N1 N N N 3 8OS C2 C N N 4 8OS N2 N N N 5 8OS N3 N N N 6 8OS C3 C Y N 7 8OS C4 C Y N 8 8OS N4 N Y N 9 8OS C5 C Y N 10 8OS N5 N Y N 11 8OS C6 C N R 12 8OS O2 O N N 13 8OS C7 C N R 14 8OS O3 O N N 15 8OS C8 C N S 16 8OS O4 O N N 17 8OS C9 C N R 18 8OS C10 C N N 19 8OS O5 O N N 20 8OS P1 P N N 21 8OS O6 O N N 22 8OS O7 O N N 23 8OS C11 C Y N 24 8OS N6 N Y N 25 8OS C12 C Y N 26 8OS N7 N Y N 27 8OS C13 C Y N 28 8OS C14 C N N 29 8OS H1 H N N 30 8OS H2 H N N 31 8OS H3 H N N 32 8OS H4 H N N 33 8OS H5 H N N 34 8OS H6 H N N 35 8OS H7 H N N 36 8OS H8 H N N 37 8OS H9 H N N 38 8OS H10 H N N 39 8OS H11 H N N 40 8OS H12 H N N 41 8OS H13 H N N 42 8OS H14 H N N 43 8OS H15 H N N 44 8OS H17 H N N 45 8OS H18 H N N 46 8OS H19 H N N 47 A OP3 O N N 48 A P P N N 49 A OP1 O N N 50 A OP2 O N N 51 A "O5'" O N N 52 A "C5'" C N N 53 A "C4'" C N R 54 A "O4'" O N N 55 A "C3'" C N S 56 A "O3'" O N N 57 A "C2'" C N R 58 A "O2'" O N N 59 A "C1'" C N R 60 A N9 N Y N 61 A C8 C Y N 62 A N7 N Y N 63 A C5 C Y N 64 A C6 C Y N 65 A N6 N N N 66 A N1 N Y N 67 A C2 C Y N 68 A N3 N Y N 69 A C4 C Y N 70 A HOP3 H N N 71 A HOP2 H N N 72 A "H5'" H N N 73 A "H5''" H N N 74 A "H4'" H N N 75 A "H3'" H N N 76 A "HO3'" H N N 77 A "H2'" H N N 78 A "HO2'" H N N 79 A "H1'" H N N 80 A H8 H N N 81 A H61 H N N 82 A H62 H N N 83 A H2 H N N 84 C OP3 O N N 85 C P P N N 86 C OP1 O N N 87 C OP2 O N N 88 C "O5'" O N N 89 C "C5'" C N N 90 C "C4'" C N R 91 C "O4'" O N N 92 C "C3'" C N S 93 C "O3'" O N N 94 C "C2'" C N R 95 C "O2'" O N N 96 C "C1'" C N R 97 C N1 N N N 98 C C2 C N N 99 C O2 O N N 100 C N3 N N N 101 C C4 C N N 102 C N4 N N N 103 C C5 C N N 104 C C6 C N N 105 C HOP3 H N N 106 C HOP2 H N N 107 C "H5'" H N N 108 C "H5''" H N N 109 C "H4'" H N N 110 C "H3'" H N N 111 C "HO3'" H N N 112 C "H2'" H N N 113 C "HO2'" H N N 114 C "H1'" H N N 115 C H41 H N N 116 C H42 H N N 117 C H5 H N N 118 C H6 H N N 119 G OP3 O N N 120 G P P N N 121 G OP1 O N N 122 G OP2 O N N 123 G "O5'" O N N 124 G "C5'" C N N 125 G "C4'" C N R 126 G "O4'" O N N 127 G "C3'" C N S 128 G "O3'" O N N 129 G "C2'" C N R 130 G "O2'" O N N 131 G "C1'" C N R 132 G N9 N Y N 133 G C8 C Y N 134 G N7 N Y N 135 G C5 C Y N 136 G C6 C N N 137 G O6 O N N 138 G N1 N N N 139 G C2 C N N 140 G N2 N N N 141 G N3 N N N 142 G C4 C Y N 143 G HOP3 H N N 144 G HOP2 H N N 145 G "H5'" H N N 146 G "H5''" H N N 147 G "H4'" H N N 148 G "H3'" H N N 149 G "HO3'" H N N 150 G "H2'" H N N 151 G "HO2'" H N N 152 G "H1'" H N N 153 G H8 H N N 154 G H1 H N N 155 G H21 H N N 156 G H22 H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 LCC "O5'" O N N 161 LCC "C5'" C N N 162 LCC "C4'" C N R 163 LCC "O4'" O N N 164 LCC "C1'" C N R 165 LCC N1 N N N 166 LCC C6 C N N 167 LCC C5 C N N 168 LCC C5M C N N 169 LCC C4 C N N 170 LCC N4 N N N 171 LCC N3 N N N 172 LCC C2 C N N 173 LCC O2 O N N 174 LCC "C3'" C N S 175 LCC "C2'" C N R 176 LCC "O2'" O N N 177 LCC "O3'" O N N 178 LCC "C6'" C N N 179 LCC P P N N 180 LCC O1P O N N 181 LCC O2P O N N 182 LCC OXT O N N 183 LCC "H5'1" H N N 184 LCC "H5'2" H N N 185 LCC "H1'" H N N 186 LCC H6 H N N 187 LCC H5M1 H N N 188 LCC H5M2 H N N 189 LCC H5M3 H N N 190 LCC H41 H N N 191 LCC H42 H N N 192 LCC "H3'" H N N 193 LCC "H2'1" H N N 194 LCC H3T H N N 195 LCC "H6'1" H N N 196 LCC "H6'2" H N N 197 LCC H1P H N N 198 LCC HXT H N N 199 LCG P P N N 200 LCG OP1 O N N 201 LCG "O5'" O N N 202 LCG "C5'" C N N 203 LCG "C3'" C N S 204 LCG "C6'" C N N 205 LCG N9 N Y N 206 LCG C8 C Y N 207 LCG C4 C Y N 208 LCG N7 N Y N 209 LCG C5 C Y N 210 LCG C6 C N N 211 LCG "C2'" C N R 212 LCG O6 O N N 213 LCG "C4'" C N R 214 LCG "C1'" C N R 215 LCG C2 C N N 216 LCG N1 N N N 217 LCG "O4'" O N N 218 LCG OP2 O N N 219 LCG N2 N N N 220 LCG N3 N N N 221 LCG "O2'" O N N 222 LCG "O3'" O N N 223 LCG OP3 O N N 224 LCG "H5'" H N N 225 LCG "H5''" H N N 226 LCG "H3'" H N N 227 LCG "H6'1" H N N 228 LCG "H6'2" H N N 229 LCG H8 H N N 230 LCG "H2'" H N N 231 LCG "H1'" H N N 232 LCG H1 H N N 233 LCG HOP2 H N N 234 LCG H21 H N N 235 LCG H22 H N N 236 LCG "HO3'" H N N 237 LCG HOP3 H N N 238 MG MG MG N N 239 U OP3 O N N 240 U P P N N 241 U OP1 O N N 242 U OP2 O N N 243 U "O5'" O N N 244 U "C5'" C N N 245 U "C4'" C N R 246 U "O4'" O N N 247 U "C3'" C N S 248 U "O3'" O N N 249 U "C2'" C N R 250 U "O2'" O N N 251 U "C1'" C N R 252 U N1 N N N 253 U C2 C N N 254 U O2 O N N 255 U N3 N N N 256 U C4 C N N 257 U O4 O N N 258 U C5 C N N 259 U C6 C N N 260 U HOP3 H N N 261 U HOP2 H N N 262 U "H5'" H N N 263 U "H5''" H N N 264 U "H4'" H N N 265 U "H3'" H N N 266 U "HO3'" H N N 267 U "H2'" H N N 268 U "HO2'" H N N 269 U "H1'" H N N 270 U H3 H N N 271 U H5 H N N 272 U H6 H N N 273 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OS C14 C13 sing N N 1 8OS O7 P1 doub N N 2 8OS C13 N7 sing Y N 3 8OS C13 C11 doub Y N 4 8OS C10 C9 sing N N 5 8OS C10 O5 sing N N 6 8OS N7 C12 doub Y N 7 8OS O4 C8 sing N N 8 8OS P1 C11 sing N N 9 8OS P1 O5 sing N N 10 8OS P1 O6 sing N N 11 8OS C11 N6 sing Y N 12 8OS C9 C8 sing N N 13 8OS C9 O2 sing N N 14 8OS C8 C7 sing N N 15 8OS C12 N6 sing Y N 16 8OS O2 C6 sing N N 17 8OS O3 C7 sing N N 18 8OS C7 C6 sing N N 19 8OS C6 N5 sing N N 20 8OS C5 N5 sing Y N 21 8OS C5 N4 doub Y N 22 8OS N5 C3 sing Y N 23 8OS N4 C4 sing Y N 24 8OS C3 N3 sing N N 25 8OS C3 C4 doub Y N 26 8OS N3 C2 doub N N 27 8OS C4 C1 sing N N 28 8OS C2 N2 sing N N 29 8OS C2 N1 sing N N 30 8OS C1 N1 sing N N 31 8OS C1 O1 doub N N 32 8OS N1 H1 sing N N 33 8OS N2 H2 sing N N 34 8OS N2 H3 sing N N 35 8OS C5 H4 sing N N 36 8OS C6 H5 sing N N 37 8OS C7 H6 sing N N 38 8OS O3 H7 sing N N 39 8OS C8 H8 sing N N 40 8OS O4 H9 sing N N 41 8OS C9 H10 sing N N 42 8OS C10 H11 sing N N 43 8OS C10 H12 sing N N 44 8OS O6 H13 sing N N 45 8OS N6 H14 sing N N 46 8OS C12 H15 sing N N 47 8OS C14 H17 sing N N 48 8OS C14 H18 sing N N 49 8OS C14 H19 sing N N 50 A OP3 P sing N N 51 A OP3 HOP3 sing N N 52 A P OP1 doub N N 53 A P OP2 sing N N 54 A P "O5'" sing N N 55 A OP2 HOP2 sing N N 56 A "O5'" "C5'" sing N N 57 A "C5'" "C4'" sing N N 58 A "C5'" "H5'" sing N N 59 A "C5'" "H5''" sing N N 60 A "C4'" "O4'" sing N N 61 A "C4'" "C3'" sing N N 62 A "C4'" "H4'" sing N N 63 A "O4'" "C1'" sing N N 64 A "C3'" "O3'" sing N N 65 A "C3'" "C2'" sing N N 66 A "C3'" "H3'" sing N N 67 A "O3'" "HO3'" sing N N 68 A "C2'" "O2'" sing N N 69 A "C2'" "C1'" sing N N 70 A "C2'" "H2'" sing N N 71 A "O2'" "HO2'" sing N N 72 A "C1'" N9 sing N N 73 A "C1'" "H1'" sing N N 74 A N9 C8 sing Y N 75 A N9 C4 sing Y N 76 A C8 N7 doub Y N 77 A C8 H8 sing N N 78 A N7 C5 sing Y N 79 A C5 C6 sing Y N 80 A C5 C4 doub Y N 81 A C6 N6 sing N N 82 A C6 N1 doub Y N 83 A N6 H61 sing N N 84 A N6 H62 sing N N 85 A N1 C2 sing Y N 86 A C2 N3 doub Y N 87 A C2 H2 sing N N 88 A N3 C4 sing Y N 89 C OP3 P sing N N 90 C OP3 HOP3 sing N N 91 C P OP1 doub N N 92 C P OP2 sing N N 93 C P "O5'" sing N N 94 C OP2 HOP2 sing N N 95 C "O5'" "C5'" sing N N 96 C "C5'" "C4'" sing N N 97 C "C5'" "H5'" sing N N 98 C "C5'" "H5''" sing N N 99 C "C4'" "O4'" sing N N 100 C "C4'" "C3'" sing N N 101 C "C4'" "H4'" sing N N 102 C "O4'" "C1'" sing N N 103 C "C3'" "O3'" sing N N 104 C "C3'" "C2'" sing N N 105 C "C3'" "H3'" sing N N 106 C "O3'" "HO3'" sing N N 107 C "C2'" "O2'" sing N N 108 C "C2'" "C1'" sing N N 109 C "C2'" "H2'" sing N N 110 C "O2'" "HO2'" sing N N 111 C "C1'" N1 sing N N 112 C "C1'" "H1'" sing N N 113 C N1 C2 sing N N 114 C N1 C6 sing N N 115 C C2 O2 doub N N 116 C C2 N3 sing N N 117 C N3 C4 doub N N 118 C C4 N4 sing N N 119 C C4 C5 sing N N 120 C N4 H41 sing N N 121 C N4 H42 sing N N 122 C C5 C6 doub N N 123 C C5 H5 sing N N 124 C C6 H6 sing N N 125 G OP3 P sing N N 126 G OP3 HOP3 sing N N 127 G P OP1 doub N N 128 G P OP2 sing N N 129 G P "O5'" sing N N 130 G OP2 HOP2 sing N N 131 G "O5'" "C5'" sing N N 132 G "C5'" "C4'" sing N N 133 G "C5'" "H5'" sing N N 134 G "C5'" "H5''" sing N N 135 G "C4'" "O4'" sing N N 136 G "C4'" "C3'" sing N N 137 G "C4'" "H4'" sing N N 138 G "O4'" "C1'" sing N N 139 G "C3'" "O3'" sing N N 140 G "C3'" "C2'" sing N N 141 G "C3'" "H3'" sing N N 142 G "O3'" "HO3'" sing N N 143 G "C2'" "O2'" sing N N 144 G "C2'" "C1'" sing N N 145 G "C2'" "H2'" sing N N 146 G "O2'" "HO2'" sing N N 147 G "C1'" N9 sing N N 148 G "C1'" "H1'" sing N N 149 G N9 C8 sing Y N 150 G N9 C4 sing Y N 151 G C8 N7 doub Y N 152 G C8 H8 sing N N 153 G N7 C5 sing Y N 154 G C5 C6 sing N N 155 G C5 C4 doub Y N 156 G C6 O6 doub N N 157 G C6 N1 sing N N 158 G N1 C2 sing N N 159 G N1 H1 sing N N 160 G C2 N2 sing N N 161 G C2 N3 doub N N 162 G N2 H21 sing N N 163 G N2 H22 sing N N 164 G N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 LCC "O5'" "C5'" sing N N 168 LCC "O5'" P sing N N 169 LCC "C5'" "C4'" sing N N 170 LCC "C5'" "H5'1" sing N N 171 LCC "C5'" "H5'2" sing N N 172 LCC "C4'" "O4'" sing N N 173 LCC "C4'" "C3'" sing N N 174 LCC "C4'" "C6'" sing N N 175 LCC "O4'" "C1'" sing N N 176 LCC "C1'" N1 sing N N 177 LCC "C1'" "C2'" sing N N 178 LCC "C1'" "H1'" sing N N 179 LCC N1 C6 sing N N 180 LCC N1 C2 sing N N 181 LCC C6 C5 doub N N 182 LCC C6 H6 sing N N 183 LCC C5 C5M sing N N 184 LCC C5 C4 sing N N 185 LCC C5M H5M1 sing N N 186 LCC C5M H5M2 sing N N 187 LCC C5M H5M3 sing N N 188 LCC C4 N4 sing N N 189 LCC C4 N3 doub N N 190 LCC N4 H41 sing N N 191 LCC N4 H42 sing N N 192 LCC N3 C2 sing N N 193 LCC C2 O2 doub N N 194 LCC "C3'" "C2'" sing N N 195 LCC "C3'" "O3'" sing N N 196 LCC "C3'" "H3'" sing N N 197 LCC "C2'" "O2'" sing N N 198 LCC "C2'" "H2'1" sing N N 199 LCC "O2'" "C6'" sing N N 200 LCC "O3'" H3T sing N N 201 LCC "C6'" "H6'1" sing N N 202 LCC "C6'" "H6'2" sing N N 203 LCC P O1P sing N N 204 LCC P O2P doub N N 205 LCC P OXT sing N N 206 LCC O1P H1P sing N N 207 LCC OXT HXT sing N N 208 LCG P OP1 doub N N 209 LCG P "O5'" sing N N 210 LCG P OP2 sing N N 211 LCG P OP3 sing N N 212 LCG "O5'" "C5'" sing N N 213 LCG "C5'" "C4'" sing N N 214 LCG "C5'" "H5'" sing N N 215 LCG "C5'" "H5''" sing N N 216 LCG "C3'" "C2'" sing N N 217 LCG "C3'" "C4'" sing N N 218 LCG "C3'" "O3'" sing N N 219 LCG "C3'" "H3'" sing N N 220 LCG "C6'" "C4'" sing N N 221 LCG "C6'" "O2'" sing N N 222 LCG "C6'" "H6'1" sing N N 223 LCG "C6'" "H6'2" sing N N 224 LCG N9 C8 sing Y N 225 LCG N9 C4 sing Y N 226 LCG N9 "C1'" sing N N 227 LCG C8 N7 doub Y N 228 LCG C8 H8 sing N N 229 LCG C4 C5 doub Y N 230 LCG C4 N3 sing N N 231 LCG N7 C5 sing Y N 232 LCG C5 C6 sing N N 233 LCG C6 O6 doub N N 234 LCG C6 N1 sing N N 235 LCG "C2'" "C1'" sing N N 236 LCG "C2'" "O2'" sing N N 237 LCG "C2'" "H2'" sing N N 238 LCG "C4'" "O4'" sing N N 239 LCG "C1'" "O4'" sing N N 240 LCG "C1'" "H1'" sing N N 241 LCG C2 N1 sing N N 242 LCG C2 N2 sing N N 243 LCG C2 N3 doub N N 244 LCG N1 H1 sing N N 245 LCG OP2 HOP2 sing N N 246 LCG N2 H21 sing N N 247 LCG N2 H22 sing N N 248 LCG "O3'" "HO3'" sing N N 249 LCG OP3 HOP3 sing N N 250 U OP3 P sing N N 251 U OP3 HOP3 sing N N 252 U P OP1 doub N N 253 U P OP2 sing N N 254 U P "O5'" sing N N 255 U OP2 HOP2 sing N N 256 U "O5'" "C5'" sing N N 257 U "C5'" "C4'" sing N N 258 U "C5'" "H5'" sing N N 259 U "C5'" "H5''" sing N N 260 U "C4'" "O4'" sing N N 261 U "C4'" "C3'" sing N N 262 U "C4'" "H4'" sing N N 263 U "O4'" "C1'" sing N N 264 U "C3'" "O3'" sing N N 265 U "C3'" "C2'" sing N N 266 U "C3'" "H3'" sing N N 267 U "O3'" "HO3'" sing N N 268 U "C2'" "O2'" sing N N 269 U "C2'" "C1'" sing N N 270 U "C2'" "H2'" sing N N 271 U "O2'" "HO2'" sing N N 272 U "C1'" N1 sing N N 273 U "C1'" "H1'" sing N N 274 U N1 C2 sing N N 275 U N1 C6 sing N N 276 U C2 O2 doub N N 277 U C2 N3 sing N N 278 U N3 C4 sing N N 279 U N3 H3 sing N N 280 U C4 O4 doub N N 281 U C4 C5 sing N N 282 U C5 C6 doub N N 283 U C5 H5 sing N N 284 U C6 H6 sing N N 285 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5V0K 'a-form double helix' 5V0K 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 A C 13 5_676 -0.264 -0.099 -0.463 -11.574 1.351 -0.867 1 A_LCG4:C13_A A 4 ? A 13 ? 19 1 1 A A 5 1_555 A U 12 5_676 0.006 -0.076 -0.046 -5.717 -8.716 1.709 2 A_A5:U12_A A 5 ? A 12 ? 20 1 1 A C 6 1_555 A G 11 5_676 0.236 -0.144 0.031 -0.414 -12.218 -0.062 3 A_C6:G11_A A 6 ? A 11 ? 19 1 1 A U 7 1_555 A A 10 5_676 -0.023 -0.138 0.064 -0.370 -8.258 0.986 4 A_U7:A10_A A 7 ? A 10 ? 20 1 1 A U 8 1_555 A A 9 5_676 -0.038 -0.119 0.007 1.870 -12.095 4.316 5 A_U8:A9_A A 8 ? A 9 ? 20 1 1 A A 9 1_555 A U 8 5_676 0.038 -0.119 0.007 -1.870 -12.095 4.316 6 A_A9:U8_A A 9 ? A 8 ? 20 1 1 A A 10 1_555 A U 7 5_676 0.023 -0.138 0.064 0.370 -8.258 0.986 7 A_A10:U7_A A 10 ? A 7 ? 20 1 1 A G 11 1_555 A C 6 5_676 -0.236 -0.144 0.031 0.414 -12.218 -0.062 8 A_G11:C6_A A 11 ? A 6 ? 19 1 1 A U 12 1_555 A A 5 5_676 -0.006 -0.076 -0.046 5.717 -8.716 1.709 9 A_U12:A5_A A 12 ? A 5 ? 20 1 1 A C 13 1_555 A LCG 4 5_676 0.264 -0.099 -0.463 11.574 1.351 -0.867 10 A_C13:LCG4_A A 13 ? A 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 A C 13 5_676 A A 5 1_555 A U 12 5_676 -0.142 -2.164 3.266 -4.213 10.228 26.955 -6.291 -0.534 2.304 20.862 8.594 29.098 1 AA_LCG4A5:U12C13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A A 5 1_555 A U 12 5_676 A C 6 1_555 A G 11 5_676 -0.258 -1.725 3.184 0.185 5.673 30.601 -4.221 0.514 2.824 10.635 -0.348 31.110 2 AA_A5C6:G11U12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A C 6 1_555 A G 11 5_676 A U 7 1_555 A A 10 5_676 -0.108 -1.748 3.222 -0.194 10.559 28.335 -5.269 0.173 2.429 20.683 0.380 30.202 3 AA_C6U7:A10G11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A U 7 1_555 A A 10 5_676 A U 8 1_555 A A 9 5_676 0.220 -1.533 3.216 0.425 4.067 31.356 -3.533 -0.328 3.001 7.485 -0.782 31.615 4 AA_U7U8:A9A10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A U 8 1_555 A A 9 5_676 A A 9 1_555 A U 8 5_676 0.000 -1.455 3.242 0.000 10.809 32.568 -4.039 0.000 2.639 18.644 0.000 34.269 5 AA_U8A9:U8A9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A A 9 1_555 A U 8 5_676 A A 10 1_555 A U 7 5_676 -0.220 -1.533 3.216 -0.425 4.067 31.356 -3.533 0.328 3.001 7.485 0.782 31.615 6 AA_A9A10:U7U8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A A 10 1_555 A U 7 5_676 A G 11 1_555 A C 6 5_676 0.108 -1.748 3.222 0.194 10.559 28.335 -5.269 -0.173 2.429 20.683 -0.380 30.202 7 AA_A10G11:C6U7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A G 11 1_555 A C 6 5_676 A U 12 1_555 A A 5 5_676 0.258 -1.725 3.184 -0.185 5.673 30.601 -4.221 -0.514 2.824 10.635 0.348 31.110 8 AA_G11U12:A5C6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A U 12 1_555 A A 5 5_676 A C 13 1_555 A LCG 4 5_676 0.142 -2.164 3.266 4.213 10.228 26.955 -6.291 0.534 2.304 20.862 -8.594 29.098 9 AA_U12C13:LCG4A5_AA A 12 ? A 5 ? A 13 ? A 4 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine" 8OS 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5HBX _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #