HEADER TRANSCRIPTION/DNA 28-FEB-17 5V0L TITLE CRYSTAL STRUCTURE OF THE AHR-ARNT HETERODIMER IN COMPLEX WITH THE DRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARNT PROTEIN,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 2, COMPND 5 BHLHE2,DIOXIN RECEPTOR,NUCLEAR TRANSLOCATOR,HYPOXIA-INDUCIBLE FACTOR COMPND 6 1-BETA,HIF1-BETA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ARYL HYDROCARBON RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: AHR; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(P*GP*GP*AP*TP*TP*GP*CP*GP*TP*GP*AP*GP*AP*AP*CP*TP*G)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(P*AP*GP*TP*TP*CP*TP*CP*AP*CP*GP*CP*AP*AP*T)-3'); COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARNT, BHLHE2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQLINKH; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: AHR; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQLINKH; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 MOL_ID: 4; SOURCE 25 SYNTHETIC: YES; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606 KEYWDS AHR, ARNT, TRANSCRIPTION FACTOR, HETERODIMER, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.-H.SEOK,W.LEE,L.JIANG,C.A.BRADFIELD,Y.XING REVDAT 6 04-OCT-23 5V0L 1 REMARK REVDAT 5 01-JAN-20 5V0L 1 REMARK REVDAT 4 27-SEP-17 5V0L 1 REMARK REVDAT 3 07-JUN-17 5V0L 1 JRNL REVDAT 2 26-APR-17 5V0L 1 JRNL REVDAT 1 19-APR-17 5V0L 0 JRNL AUTH S.H.SEOK,W.LEE,L.JIANG,K.MOLUGU,A.ZHENG,Y.LI,S.PARK, JRNL AUTH 2 C.A.BRADFIELD,Y.XING JRNL TITL STRUCTURAL HIERARCHY CONTROLLING DIMERIZATION AND TARGET DNA JRNL TITL 2 RECOGNITION IN THE AHR TRANSCRIPTIONAL COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 114 5431 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28396409 JRNL DOI 10.1073/PNAS.1617035114 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 6660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.287 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6867 - 5.0381 0.99 3185 168 0.2657 0.2941 REMARK 3 2 5.0381 - 4.0001 1.00 3143 164 0.3531 0.4330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 46.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3594 REMARK 3 ANGLE : 0.671 4971 REMARK 3 CHIRALITY : 0.087 559 REMARK 3 PLANARITY : 0.003 527 REMARK 3 DIHEDRAL : 15.507 2051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6690 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4ZPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%-12% PEG 20000, 4-6% TACSIMATE PH REMARK 280 7.0 OR 0.1 M BIS-TRIS PH 6.5, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.09950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.18200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.09950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.18200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 ASP A 70 REMARK 465 LYS A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 73 REMARK 465 PHE A 74 REMARK 465 ALA A 75 REMARK 465 ARG A 76 REMARK 465 SER A 77 REMARK 465 ASP A 78 REMARK 465 ASP A 79 REMARK 465 GLU A 80 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 VAL A 196 REMARK 465 LEU A 197 REMARK 465 ASN A 198 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 ILE A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 GLY A 270 REMARK 465 SER A 271 REMARK 465 SER A 272 REMARK 465 SER A 273 REMARK 465 VAL A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 VAL A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 VAL A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ASN A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 ASP A 298 REMARK 465 GLY A 299 REMARK 465 ILE A 312 REMARK 465 LYS A 313 REMARK 465 ALA A 314 REMARK 465 TRP A 315 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 VAL A 345 REMARK 465 THR A 346 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 ILE B 30 REMARK 465 LYS B 31 REMARK 465 SER B 32 REMARK 465 ASN B 33 REMARK 465 PRO B 34 REMARK 465 SER B 35 REMARK 465 LYS B 36 REMARK 465 PRO B 90 REMARK 465 ALA B 91 REMARK 465 ASP B 92 REMARK 465 ARG B 93 REMARK 465 ASN B 94 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 GLN B 97 REMARK 465 ASP B 98 REMARK 465 GLN B 99 REMARK 465 CYS B 100 REMARK 465 ARG B 101 REMARK 465 ALA B 102 REMARK 465 GLN B 103 REMARK 465 ILE B 104 REMARK 465 ARG B 105 REMARK 465 ASP B 106 REMARK 465 TRP B 107 REMARK 465 GLN B 108 REMARK 465 ASP B 109 REMARK 465 LEU B 110 REMARK 465 ASN B 121 REMARK 465 GLY B 122 REMARK 465 PHE B 123 REMARK 465 ASN B 177 REMARK 465 PRO B 178 REMARK 465 ASP B 179 REMARK 465 SER B 180 REMARK 465 ALA B 181 REMARK 465 GLN B 182 REMARK 465 GLY B 183 REMARK 465 VAL B 184 REMARK 465 ASP B 185 REMARK 465 GLU B 186 REMARK 465 ALA B 187 REMARK 465 HIS B 188 REMARK 465 GLY B 189 REMARK 465 PRO B 190 REMARK 465 PRO B 191 REMARK 465 GLN B 192 REMARK 465 ALA B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 195 REMARK 465 TYR B 196 REMARK 465 TYR B 197 REMARK 465 THR B 198 REMARK 465 PRO B 199 REMARK 465 ARG B 217 REMARK 465 LEU B 218 REMARK 465 ARG B 219 REMARK 465 CYS B 220 REMARK 465 LEU B 221 REMARK 465 LEU B 222 REMARK 465 GLY B 242 REMARK 465 GLN B 243 REMARK 465 ASN B 244 REMARK 465 LYS B 245 REMARK 465 LYS B 246 REMARK 465 GLY B 247 REMARK 465 LYS B 248 REMARK 465 ASP B 249 REMARK 465 GLY B 250 REMARK 465 ALA B 251 REMARK 465 LEU B 252 REMARK 465 GLN B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 331 O GLY A 332 1.68 REMARK 500 O VAL B 124 OG SER B 137 2.00 REMARK 500 OG SER A 180 CG2 THR A 183 2.00 REMARK 500 CB SER A 180 CG2 THR A 183 2.05 REMARK 500 O ALA A 107 N GLU A 111 2.14 REMARK 500 O TYR A 108 N LEU A 112 2.16 REMARK 500 OG SER B 80 CG1 VAL B 84 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 328 OH TYR B 239 3545 1.76 REMARK 500 N GLN A 81 OP2 DT D 17 4445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 126 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 191 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP A 191 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 PHE B 81 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -70.46 -60.70 REMARK 500 ALA A 123 79.33 -43.68 REMARK 500 LYS A 125 68.17 -163.15 REMARK 500 ALA A 172 26.43 -140.38 REMARK 500 SER A 192 40.29 -101.54 REMARK 500 GLN A 201 9.51 -67.35 REMARK 500 PRO A 301 4.34 -62.42 REMARK 500 GLU A 328 -145.97 -101.58 REMARK 500 ALA A 329 97.58 -163.94 REMARK 500 SER A 333 105.18 -57.44 REMARK 500 CYS A 336 -175.03 -178.81 REMARK 500 LEU B 86 64.32 -162.71 REMARK 500 ALA B 131 42.20 70.25 REMARK 500 THR B 162 -70.29 -79.27 REMARK 500 TYR B 239 79.27 -119.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 301 DBREF 5V0L A 70 346 UNP P27540 ARNT_HUMAN 70 346 DBREF 5V0L B 29 267 UNP P30561 AHR_MOUSE 29 267 DBREF 5V0L C 4 20 PDB 5V0L 5V0L 4 20 DBREF 5V0L D 4 17 PDB 5V0L 5V0L 4 17 SEQADV 5V0L GLY A 68 UNP P27540 EXPRESSION TAG SEQADV 5V0L SER A 69 UNP P27540 EXPRESSION TAG SEQADV 5V0L GLY B 27 UNP P30561 EXPRESSION TAG SEQADV 5V0L SER B 28 UNP P30561 EXPRESSION TAG SEQRES 1 A 279 GLY SER ASP LYS GLU ARG PHE ALA ARG SER ASP ASP GLU SEQRES 2 A 279 GLN SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN SEQRES 3 A 279 HIS SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR SEQRES 4 A 279 ALA TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SEQRES 5 A 279 SER ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU SEQRES 6 A 279 ARG MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR SEQRES 7 A 279 GLY ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE SEQRES 8 A 279 LEU THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA SEQRES 9 A 279 ALA ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY SEQRES 10 A 279 ARG VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU SEQRES 11 A 279 ASN GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR SEQRES 12 A 279 ASP GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU SEQRES 13 A 279 GLN LEU SER THR SER GLU ASN ALA LEU THR GLY ARG ILE SEQRES 14 A 279 LEU ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN SEQRES 15 A 279 GLN SER SER MET ARG MET CYS MET GLY SER ARG ARG SER SEQRES 16 A 279 PHE ILE CYS ARG MET ARG CYS GLY SER SER SER VAL ASP SEQRES 17 A 279 PRO VAL SER VAL ASN ARG LEU SER PHE VAL ARG ASN ARG SEQRES 18 A 279 CYS ARG ASN GLY LEU GLY SER VAL LYS ASP GLY GLU PRO SEQRES 19 A 279 HIS PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA SEQRES 20 A 279 TRP PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO SEQRES 21 A 279 GLU ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE SEQRES 22 A 279 GLY ARG LEU GLN VAL THR SEQRES 1 B 241 GLY SER GLY ILE LYS SER ASN PRO SER LYS ARG HIS ARG SEQRES 2 B 241 ASP ARG LEU ASN THR GLU LEU ASP ARG LEU ALA SER LEU SEQRES 3 B 241 LEU PRO PHE PRO GLN ASP VAL ILE ASN LYS LEU ASP LYS SEQRES 4 B 241 LEU SER VAL LEU ARG LEU SER VAL SER TYR LEU ARG ALA SEQRES 5 B 241 LYS SER PHE PHE ASP VAL ALA LEU LYS SER THR PRO ALA SEQRES 6 B 241 ASP ARG ASN GLY GLY GLN ASP GLN CYS ARG ALA GLN ILE SEQRES 7 B 241 ARG ASP TRP GLN ASP LEU GLN GLU GLY GLU PHE LEU LEU SEQRES 8 B 241 GLN ALA LEU ASN GLY PHE VAL LEU VAL VAL THR ALA ASP SEQRES 9 B 241 ALA LEU VAL PHE TYR ALA SER SER THR ILE GLN ASP TYR SEQRES 10 B 241 LEU GLY PHE GLN GLN SER ASP VAL ILE HIS GLN SER VAL SEQRES 11 B 241 TYR GLU LEU ILE HIS THR GLU ASP ARG ALA GLU PHE GLN SEQRES 12 B 241 ARG GLN LEU HIS TRP ALA LEU ASN PRO ASP SER ALA GLN SEQRES 13 B 241 GLY VAL ASP GLU ALA HIS GLY PRO PRO GLN ALA ALA VAL SEQRES 14 B 241 TYR TYR THR PRO ASP GLN LEU PRO PRO GLU ASN ALA SER SEQRES 15 B 241 PHE MET GLU ARG CYS PHE ARG CYS ARG LEU ARG CYS LEU SEQRES 16 B 241 LEU ASP ASN SER SER GLY PHE LEU ALA MET ASN PHE GLN SEQRES 17 B 241 GLY ARG LEU LYS TYR LEU HIS GLY GLN ASN LYS LYS GLY SEQRES 18 B 241 LYS ASP GLY ALA LEU LEU PRO PRO GLN LEU ALA LEU PHE SEQRES 19 B 241 ALA ILE ALA THR PRO LEU GLN SEQRES 1 C 17 DG DG DA DT DT DG DC DG DT DG DA DG DA SEQRES 2 C 17 DA DC DT DG SEQRES 1 D 14 DA DG DT DT DC DT DC DA DC DG DC DA DA SEQRES 2 D 14 DT HET PEG A 401 7 HET CIT B 301 13 HET PEG B 302 7 HET CIT C 101 13 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CIT CITRIC ACID FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 CIT 2(C6 H8 O7) HELIX 1 AA1 ARG A 91 ARG A 99 1 9 HELIX 2 AA2 ARG A 99 ASP A 114 1 16 HELIX 3 AA3 LEU A 129 MET A 134 1 6 HELIX 4 AA4 MET A 134 LEU A 142 1 9 HELIX 5 AA5 THR A 160 ASP A 173 1 14 HELIX 6 AA6 PRO A 200 GLY A 206 1 7 HELIX 7 AA7 THR A 208 VAL A 213 1 6 HELIX 8 AA8 HIS A 214 VAL A 218 5 5 HELIX 9 AA9 ARG B 37 ARG B 41 5 5 HELIX 10 AB1 LEU B 42 LEU B 52 1 11 HELIX 11 AB2 VAL B 59 LEU B 63 5 5 HELIX 12 AB3 ASP B 64 SER B 80 1 17 HELIX 13 AB4 GLU B 114 ALA B 119 1 6 HELIX 14 AB5 GLN B 147 ILE B 152 1 6 HELIX 15 AB6 VAL B 156 ILE B 160 5 5 HELIX 16 AB7 ASP B 164 TRP B 174 1 11 SHEET 1 AA1 3 VAL A 186 TYR A 188 0 SHEET 2 AA1 3 PHE A 177 VAL A 179 -1 N ILE A 178 O VAL A 187 SHEET 3 AA1 3 VAL A 338 ALA A 339 -1 O ALA A 339 N PHE A 177 SHEET 1 AA2 2 ARG A 261 PHE A 263 0 SHEET 2 AA2 2 CYS A 308 GLY A 310 -1 O GLY A 310 N ARG A 261 SHEET 1 AA3 4 LEU B 125 VAL B 127 0 SHEET 2 AA3 4 ALA B 258 THR B 264 -1 O ALA B 261 N LEU B 125 SHEET 3 AA3 4 ASN B 232 LYS B 238 -1 N ASN B 232 O THR B 264 SHEET 4 AA3 4 PHE B 209 MET B 210 -1 N PHE B 209 O PHE B 233 SHEET 1 AA4 2 CYS B 213 PHE B 214 0 SHEET 2 AA4 2 PHE B 228 LEU B 229 -1 O LEU B 229 N CYS B 213 CISPEP 1 PRO B 203 PRO B 204 0 -6.94 SITE 1 AC1 3 HIS B 161 THR B 162 GLU B 163 CRYST1 78.199 64.364 157.725 90.00 100.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012788 0.000000 0.002286 0.00000 SCALE2 0.000000 0.015537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006441 0.00000