data_5V0R # _entry.id 5V0R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5V0R WWPDB D_1000226722 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id SSGCID-NafoA.00601.c _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V0R _pdbx_database_status.recvd_initial_deposition_date 2017-02-28 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of ubiquitin-conjugating enzyme from Naegleria fowleri with modified Cys99' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Irwin, R.M.' 1 primary 'Mayclin, S.J.' 2 primary 'Lorimer, D.D.' 3 primary 'Edwards, T.E.' 4 # _cell.length_a 52.360 _cell.length_b 85.240 _cell.length_c 33.850 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5V0R _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 5V0R _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme' 19401.043 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 239 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NafoA.00601.c # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMLNNNQNNKKMSSSSKLRLLSDLQQLQKDPPEGITASPESENDLYVWNATITGPMDSIWEGGIFFLRLTFPE DYPTKPPKVKFTSKIFHPNVYKDGSI(CSA)LDIVQDKWSPIYTVDSILTSILSLLEDPNPDSPANPEAAKLFVNDPKEY KKRVRKCVESLME ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMLNNNQNNKKMSSSSKLRLLSDLQQLQKDPPEGITASPESENDLYVWNATITGPMDSIWEGGIFFLRLTFPE DYPTKPPKVKFTSKIFHPNVYKDGSICLDIVQDKWSPIYTVDSILTSILSLLEDPNPDSPANPEAAKLFVNDPKEYKKRV RKCVESLME ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SSGCID-NafoA.00601.c # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 LEU n 1 11 ASN n 1 12 ASN n 1 13 ASN n 1 14 GLN n 1 15 ASN n 1 16 ASN n 1 17 LYS n 1 18 LYS n 1 19 MET n 1 20 SER n 1 21 SER n 1 22 SER n 1 23 SER n 1 24 LYS n 1 25 LEU n 1 26 ARG n 1 27 LEU n 1 28 LEU n 1 29 SER n 1 30 ASP n 1 31 LEU n 1 32 GLN n 1 33 GLN n 1 34 LEU n 1 35 GLN n 1 36 LYS n 1 37 ASP n 1 38 PRO n 1 39 PRO n 1 40 GLU n 1 41 GLY n 1 42 ILE n 1 43 THR n 1 44 ALA n 1 45 SER n 1 46 PRO n 1 47 GLU n 1 48 SER n 1 49 GLU n 1 50 ASN n 1 51 ASP n 1 52 LEU n 1 53 TYR n 1 54 VAL n 1 55 TRP n 1 56 ASN n 1 57 ALA n 1 58 THR n 1 59 ILE n 1 60 THR n 1 61 GLY n 1 62 PRO n 1 63 MET n 1 64 ASP n 1 65 SER n 1 66 ILE n 1 67 TRP n 1 68 GLU n 1 69 GLY n 1 70 GLY n 1 71 ILE n 1 72 PHE n 1 73 PHE n 1 74 LEU n 1 75 ARG n 1 76 LEU n 1 77 THR n 1 78 PHE n 1 79 PRO n 1 80 GLU n 1 81 ASP n 1 82 TYR n 1 83 PRO n 1 84 THR n 1 85 LYS n 1 86 PRO n 1 87 PRO n 1 88 LYS n 1 89 VAL n 1 90 LYS n 1 91 PHE n 1 92 THR n 1 93 SER n 1 94 LYS n 1 95 ILE n 1 96 PHE n 1 97 HIS n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 TYR n 1 102 LYS n 1 103 ASP n 1 104 GLY n 1 105 SER n 1 106 ILE n 1 107 CSA n 1 108 LEU n 1 109 ASP n 1 110 ILE n 1 111 VAL n 1 112 GLN n 1 113 ASP n 1 114 LYS n 1 115 TRP n 1 116 SER n 1 117 PRO n 1 118 ILE n 1 119 TYR n 1 120 THR n 1 121 VAL n 1 122 ASP n 1 123 SER n 1 124 ILE n 1 125 LEU n 1 126 THR n 1 127 SER n 1 128 ILE n 1 129 LEU n 1 130 SER n 1 131 LEU n 1 132 LEU n 1 133 GLU n 1 134 ASP n 1 135 PRO n 1 136 ASN n 1 137 PRO n 1 138 ASP n 1 139 SER n 1 140 PRO n 1 141 ALA n 1 142 ASN n 1 143 PRO n 1 144 GLU n 1 145 ALA n 1 146 ALA n 1 147 LYS n 1 148 LEU n 1 149 PHE n 1 150 VAL n 1 151 ASN n 1 152 ASP n 1 153 PRO n 1 154 LYS n 1 155 GLU n 1 156 TYR n 1 157 LYS n 1 158 LYS n 1 159 ARG n 1 160 VAL n 1 161 ARG n 1 162 LYS n 1 163 CYS n 1 164 VAL n 1 165 GLU n 1 166 SER n 1 167 LEU n 1 168 MET n 1 169 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 30863' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Naegleria fowleri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5763 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5V0R _struct_ref.pdbx_db_accession 5V0R _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5V0R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5V0R _struct_ref_seq.db_align_beg -7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -7 _struct_ref_seq.pdbx_auth_seq_align_end 161 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CSA 'L-peptide linking' n S-ACETONYLCYSTEINE ? 'C6 H11 N O3 S' 177.221 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V0R _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Top96 C9 (100 mM Tris-HCl pH 8.5, 200 mM MgCl2, 25 % PEG 3350), cryo 15% ethylene glycol, apo, tray 286982 puck vxx6-11' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-01-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'RIGAKU VARIMAX' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.entry_id 5V0R _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.620 _reflns.d_resolution_high 1.550 _reflns.number_obs 22634 _reflns.number_all ? _reflns.percent_possible_obs 99.700 _reflns.pdbx_Rmerge_I_obs 0.027 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 48.140 _reflns.B_iso_Wilson_estimate 15.260 _reflns.pdbx_redundancy 10.822 _reflns.pdbx_Rrim_I_all 0.028 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_CC_half 1.000 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 244943 _reflns.pdbx_scaling_rejects 80 _reflns.pdbx_chi_squared 1.046 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.550 1.590 6428 ? 1593 ? 0.198 6.260 ? ? 4.035 ? ? 1636 ? ? ? ? ? 97.400 0.227 ? 0.966 1 2 1.590 1.630 11104 ? 1594 ? 0.187 9.410 ? ? 6.966 ? ? 1608 ? ? ? ? ? 99.100 0.201 ? 0.988 1 3 1.630 1.680 11994 ? 1556 ? 0.159 11.180 ? ? 7.708 ? ? 1564 ? ? ? ? ? 99.500 0.170 ? 0.993 1 4 1.680 1.730 12124 ? 1526 ? 0.128 14.150 ? ? 7.945 ? ? 1527 ? ? ? ? ? 99.900 0.137 ? 0.995 1 5 1.730 1.790 12367 ? 1481 ? 0.109 16.970 ? ? 8.350 ? ? 1481 ? ? ? ? ? 100.000 0.116 ? 0.996 1 6 1.790 1.850 12404 ? 1428 ? 0.091 20.960 ? ? 8.686 ? ? 1428 ? ? ? ? ? 100.000 0.096 ? 0.998 1 7 1.850 1.920 12504 ? 1364 ? 0.070 26.890 ? ? 9.167 ? ? 1364 ? ? ? ? ? 100.000 0.074 ? 0.998 1 8 1.920 2.000 12877 ? 1354 ? 0.055 34.390 ? ? 9.510 ? ? 1354 ? ? ? ? ? 100.000 0.058 ? 0.999 1 9 2.000 2.090 12711 ? 1280 ? 0.047 42.000 ? ? 9.930 ? ? 1280 ? ? ? ? ? 100.000 0.049 ? 0.999 1 10 2.090 2.190 12477 ? 1217 ? 0.042 51.130 ? ? 10.252 ? ? 1217 ? ? ? ? ? 100.000 0.044 ? 0.999 1 11 2.190 2.310 13414 ? 1175 ? 0.036 59.950 ? ? 11.416 ? ? 1176 ? ? ? ? ? 99.900 0.038 ? 1.000 1 12 2.310 2.450 14207 ? 1115 ? 0.034 70.270 ? ? 12.742 ? ? 1116 ? ? ? ? ? 99.900 0.035 ? 1.000 1 13 2.450 2.620 14035 ? 1052 ? 0.031 75.010 ? ? 13.341 ? ? 1052 ? ? ? ? ? 100.000 0.033 ? 1.000 1 14 2.620 2.830 13895 ? 977 ? 0.029 83.110 ? ? 14.222 ? ? 977 ? ? ? ? ? 100.000 0.030 ? 1.000 1 15 2.830 3.100 14122 ? 912 ? 0.026 96.280 ? ? 15.485 ? ? 912 ? ? ? ? ? 100.000 0.027 ? 1.000 1 16 3.100 3.470 15424 ? 824 ? 0.024 114.250 ? ? 18.718 ? ? 824 ? ? ? ? ? 100.000 0.025 ? 1.000 1 17 3.470 4.000 14873 ? 736 ? 0.021 129.610 ? ? 20.208 ? ? 736 ? ? ? ? ? 100.000 0.021 ? 1.000 1 18 4.000 4.900 12711 ? 638 ? 0.019 130.210 ? ? 19.923 ? ? 638 ? ? ? ? ? 100.000 0.019 ? 1.000 1 19 4.900 6.930 9897 ? 505 ? 0.019 127.220 ? ? 19.598 ? ? 506 ? ? ? ? ? 99.800 0.020 ? 1.000 1 20 6.930 42.620 5375 ? 307 ? 0.016 123.360 ? ? 17.508 ? ? 308 ? ? ? ? ? 99.700 0.016 ? 1.000 # _refine.entry_id 5V0R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 42.6200 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6800 _refine.ls_number_reflns_obs 22634 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1592 _refine.ls_R_factor_R_work 0.1561 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1910 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.3000 _refine.ls_number_reflns_R_free 2106 _refine.ls_number_reflns_R_work 20528 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 20.3808 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.070 _refine.B_iso_min 9.090 _refine.pdbx_overall_phase_error 17.0200 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 42.6200 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 246 _refine_hist.number_atoms_total 1390 _refine_hist.pdbx_number_residues_total 146 _refine_hist.pdbx_B_iso_mean_ligand 15.79 _refine_hist.pdbx_B_iso_mean_solvent 32.44 _refine_hist.pdbx_number_atoms_protein 1142 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1205 0.005 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1655 0.889 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 186 0.052 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 216 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 742 14.311 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.5499 1.5860 15 97.0000 1295 . 0.1964 0.2381 . 131 0.0000 1426 . 'X-RAY DIFFRACTION' . 1.5860 1.6256 15 99.0000 1346 . 0.1790 0.2309 . 117 0.0000 1463 . 'X-RAY DIFFRACTION' . 1.6256 1.6696 15 99.0000 1338 . 0.1716 0.2020 . 147 0.0000 1485 . 'X-RAY DIFFRACTION' . 1.6696 1.7187 15 100.0000 1329 . 0.1692 0.1863 . 153 0.0000 1482 . 'X-RAY DIFFRACTION' . 1.7187 1.7742 15 100.0000 1352 . 0.1640 0.1948 . 146 0.0000 1498 . 'X-RAY DIFFRACTION' . 1.7742 1.8376 15 100.0000 1331 . 0.1753 0.2350 . 158 0.0000 1489 . 'X-RAY DIFFRACTION' . 1.8376 1.9112 15 100.0000 1362 . 0.1688 0.1794 . 127 0.0000 1489 . 'X-RAY DIFFRACTION' . 1.9112 1.9982 15 100.0000 1369 . 0.1624 0.2029 . 140 0.0000 1509 . 'X-RAY DIFFRACTION' . 1.9982 2.1035 15 100.0000 1349 . 0.1497 0.1833 . 149 0.0000 1498 . 'X-RAY DIFFRACTION' . 2.1035 2.2353 15 100.0000 1366 . 0.1472 0.1790 . 154 0.0000 1520 . 'X-RAY DIFFRACTION' . 2.2353 2.4079 15 100.0000 1376 . 0.1455 0.1858 . 137 0.0000 1513 . 'X-RAY DIFFRACTION' . 2.4079 2.6502 15 100.0000 1379 . 0.1567 0.1850 . 131 0.0000 1510 . 'X-RAY DIFFRACTION' . 2.6502 3.0336 15 100.0000 1408 . 0.1549 0.1722 . 137 0.0000 1545 . 'X-RAY DIFFRACTION' . 3.0336 3.8216 15 100.0000 1420 . 0.1456 0.1742 . 129 0.0000 1549 . 'X-RAY DIFFRACTION' . 3.8216 42.6361 15 100.0000 1508 . 0.1544 0.2077 . 150 0.0000 1658 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5V0R _struct.title 'Crystal structure of ubiquitin-conjugating enzyme from Naegleria fowleri with modified Cys99' _struct.pdbx_descriptor 'ubiquitin-conjugating enzyme' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V0R _struct_keywords.text ;SSGCID, Naegleria fowleri, ubiquitin-conjugating enzyme, e2, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE ; _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 18 ? ASP A 37 ? LYS A 10 ASP A 29 1 ? 20 HELX_P HELX_P2 AA2 LEU A 108 ? GLN A 112 ? LEU A 100 GLN A 104 5 ? 5 HELX_P HELX_P3 AA3 THR A 120 ? LEU A 132 ? THR A 112 LEU A 124 1 ? 13 HELX_P HELX_P4 AA4 ASN A 142 ? ASP A 152 ? ASN A 134 ASP A 144 1 ? 11 HELX_P HELX_P5 AA5 ASP A 152 ? LYS A 162 ? ASP A 144 LYS A 154 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ILE 106 C ? ? ? 1_555 A CSA 107 N ? ? A ILE 98 A CSA 99 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale both ? A CSA 107 C ? ? ? 1_555 A LEU 108 N ? ? A CSA 99 A LEU 100 1_555 ? ? ? ? ? ? ? 1.336 ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 539 1_555 ? ? ? ? ? ? ? 2.137 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 310 1_555 ? ? ? ? ? ? ? 2.044 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 360 1_555 ? ? ? ? ? ? ? 2.036 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 365 1_555 ? ? ? ? ? ? ? 2.105 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 490 4_544 ? ? ? ? ? ? ? 2.133 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 482 4_544 ? ? ? ? ? ? ? 2.061 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 82 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 74 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 83 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 75 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.74 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 42 ? PRO A 46 ? ILE A 34 PRO A 38 AA1 2 VAL A 54 ? THR A 60 ? VAL A 46 THR A 52 AA1 3 ILE A 71 ? THR A 77 ? ILE A 63 THR A 69 AA1 4 LYS A 88 ? PHE A 91 ? LYS A 80 PHE A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 45 ? N SER A 37 O ASN A 56 ? O ASN A 48 AA1 2 3 N ALA A 57 ? N ALA A 49 O LEU A 74 ? O LEU A 66 AA1 3 4 N ARG A 75 ? N ARG A 67 O LYS A 90 ? O LYS A 82 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'binding site for residue MG A 201' AC2 Software A CL 202 ? 6 'binding site for residue CL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 310 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 360 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 365 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 482 . ? 4_544 ? 5 AC1 6 HOH D . ? HOH A 490 . ? 4_544 ? 6 AC1 6 HOH D . ? HOH A 539 . ? 1_555 ? 7 AC2 6 PRO A 79 ? PRO A 71 . ? 1_555 ? 8 AC2 6 GLU A 80 ? GLU A 72 . ? 1_555 ? 9 AC2 6 PRO A 143 ? PRO A 135 . ? 4_545 ? 10 AC2 6 GLU A 144 ? GLU A 136 . ? 4_545 ? 11 AC2 6 LYS A 147 ? LYS A 139 . ? 4_545 ? 12 AC2 6 HOH D . ? HOH A 509 . ? 1_555 ? # _atom_sites.entry_id 5V0R _atom_sites.fract_transf_matrix[1][1] 0.019099 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011732 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029542 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 ? ? ? A . n A 1 8 HIS 8 0 ? ? ? A . n A 1 9 MET 9 1 ? ? ? A . n A 1 10 LEU 10 2 ? ? ? A . n A 1 11 ASN 11 3 ? ? ? A . n A 1 12 ASN 12 4 ? ? ? A . n A 1 13 ASN 13 5 ? ? ? A . n A 1 14 GLN 14 6 ? ? ? A . n A 1 15 ASN 15 7 ? ? ? A . n A 1 16 ASN 16 8 ? ? ? A . n A 1 17 LYS 17 9 ? ? ? A . n A 1 18 LYS 18 10 10 LYS LYS A . n A 1 19 MET 19 11 11 MET MET A . n A 1 20 SER 20 12 12 SER SER A . n A 1 21 SER 21 13 13 SER SER A . n A 1 22 SER 22 14 14 SER SER A . n A 1 23 SER 23 15 15 SER SER A . n A 1 24 LYS 24 16 16 LYS LYS A . n A 1 25 LEU 25 17 17 LEU LEU A . n A 1 26 ARG 26 18 18 ARG ARG A . n A 1 27 LEU 27 19 19 LEU LEU A . n A 1 28 LEU 28 20 20 LEU LEU A . n A 1 29 SER 29 21 21 SER SER A . n A 1 30 ASP 30 22 22 ASP ASP A . n A 1 31 LEU 31 23 23 LEU LEU A . n A 1 32 GLN 32 24 24 GLN GLN A . n A 1 33 GLN 33 25 25 GLN GLN A . n A 1 34 LEU 34 26 26 LEU LEU A . n A 1 35 GLN 35 27 27 GLN GLN A . n A 1 36 LYS 36 28 28 LYS LYS A . n A 1 37 ASP 37 29 29 ASP ASP A . n A 1 38 PRO 38 30 30 PRO PRO A . n A 1 39 PRO 39 31 31 PRO PRO A . n A 1 40 GLU 40 32 32 GLU GLU A . n A 1 41 GLY 41 33 33 GLY GLY A . n A 1 42 ILE 42 34 34 ILE ILE A . n A 1 43 THR 43 35 35 THR THR A . n A 1 44 ALA 44 36 36 ALA ALA A . n A 1 45 SER 45 37 37 SER SER A . n A 1 46 PRO 46 38 38 PRO PRO A . n A 1 47 GLU 47 39 39 GLU GLU A . n A 1 48 SER 48 40 40 SER SER A . n A 1 49 GLU 49 41 41 GLU GLU A . n A 1 50 ASN 50 42 42 ASN ASN A . n A 1 51 ASP 51 43 43 ASP ASP A . n A 1 52 LEU 52 44 44 LEU LEU A . n A 1 53 TYR 53 45 45 TYR TYR A . n A 1 54 VAL 54 46 46 VAL VAL A . n A 1 55 TRP 55 47 47 TRP TRP A . n A 1 56 ASN 56 48 48 ASN ASN A . n A 1 57 ALA 57 49 49 ALA ALA A . n A 1 58 THR 58 50 50 THR THR A . n A 1 59 ILE 59 51 51 ILE ILE A . n A 1 60 THR 60 52 52 THR THR A . n A 1 61 GLY 61 53 53 GLY GLY A . n A 1 62 PRO 62 54 54 PRO PRO A . n A 1 63 MET 63 55 55 MET MET A . n A 1 64 ASP 64 56 56 ASP ASP A . n A 1 65 SER 65 57 57 SER SER A . n A 1 66 ILE 66 58 58 ILE ILE A . n A 1 67 TRP 67 59 59 TRP TRP A . n A 1 68 GLU 68 60 60 GLU GLU A . n A 1 69 GLY 69 61 61 GLY GLY A . n A 1 70 GLY 70 62 62 GLY GLY A . n A 1 71 ILE 71 63 63 ILE ILE A . n A 1 72 PHE 72 64 64 PHE PHE A . n A 1 73 PHE 73 65 65 PHE PHE A . n A 1 74 LEU 74 66 66 LEU LEU A . n A 1 75 ARG 75 67 67 ARG ARG A . n A 1 76 LEU 76 68 68 LEU LEU A . n A 1 77 THR 77 69 69 THR THR A . n A 1 78 PHE 78 70 70 PHE PHE A . n A 1 79 PRO 79 71 71 PRO PRO A . n A 1 80 GLU 80 72 72 GLU GLU A . n A 1 81 ASP 81 73 73 ASP ASP A . n A 1 82 TYR 82 74 74 TYR TYR A . n A 1 83 PRO 83 75 75 PRO PRO A . n A 1 84 THR 84 76 76 THR THR A . n A 1 85 LYS 85 77 77 LYS LYS A . n A 1 86 PRO 86 78 78 PRO PRO A . n A 1 87 PRO 87 79 79 PRO PRO A . n A 1 88 LYS 88 80 80 LYS LYS A . n A 1 89 VAL 89 81 81 VAL VAL A . n A 1 90 LYS 90 82 82 LYS LYS A . n A 1 91 PHE 91 83 83 PHE PHE A . n A 1 92 THR 92 84 84 THR THR A . n A 1 93 SER 93 85 85 SER SER A . n A 1 94 LYS 94 86 86 LYS LYS A . n A 1 95 ILE 95 87 87 ILE ILE A . n A 1 96 PHE 96 88 88 PHE PHE A . n A 1 97 HIS 97 89 89 HIS HIS A . n A 1 98 PRO 98 90 90 PRO PRO A . n A 1 99 ASN 99 91 91 ASN ASN A . n A 1 100 VAL 100 92 92 VAL VAL A . n A 1 101 TYR 101 93 93 TYR TYR A . n A 1 102 LYS 102 94 94 LYS LYS A . n A 1 103 ASP 103 95 95 ASP ASP A . n A 1 104 GLY 104 96 96 GLY GLY A . n A 1 105 SER 105 97 97 SER SER A . n A 1 106 ILE 106 98 98 ILE ILE A . n A 1 107 CSA 107 99 99 CSA CSA A . n A 1 108 LEU 108 100 100 LEU LEU A . n A 1 109 ASP 109 101 101 ASP ASP A . n A 1 110 ILE 110 102 102 ILE ILE A . n A 1 111 VAL 111 103 103 VAL VAL A . n A 1 112 GLN 112 104 104 GLN GLN A . n A 1 113 ASP 113 105 105 ASP ASP A . n A 1 114 LYS 114 106 106 LYS LYS A . n A 1 115 TRP 115 107 107 TRP TRP A . n A 1 116 SER 116 108 108 SER SER A . n A 1 117 PRO 117 109 109 PRO PRO A . n A 1 118 ILE 118 110 110 ILE ILE A . n A 1 119 TYR 119 111 111 TYR TYR A . n A 1 120 THR 120 112 112 THR THR A . n A 1 121 VAL 121 113 113 VAL VAL A . n A 1 122 ASP 122 114 114 ASP ASP A . n A 1 123 SER 123 115 115 SER SER A . n A 1 124 ILE 124 116 116 ILE ILE A . n A 1 125 LEU 125 117 117 LEU LEU A . n A 1 126 THR 126 118 118 THR THR A . n A 1 127 SER 127 119 119 SER SER A . n A 1 128 ILE 128 120 120 ILE ILE A . n A 1 129 LEU 129 121 121 LEU LEU A . n A 1 130 SER 130 122 122 SER SER A . n A 1 131 LEU 131 123 123 LEU LEU A . n A 1 132 LEU 132 124 124 LEU LEU A . n A 1 133 GLU 133 125 125 GLU GLU A . n A 1 134 ASP 134 126 126 ASP ASP A . n A 1 135 PRO 135 127 127 PRO PRO A . n A 1 136 ASN 136 128 128 ASN ASN A . n A 1 137 PRO 137 129 129 PRO PRO A . n A 1 138 ASP 138 130 130 ASP ASP A . n A 1 139 SER 139 131 131 SER SER A . n A 1 140 PRO 140 132 132 PRO PRO A . n A 1 141 ALA 141 133 133 ALA ALA A . n A 1 142 ASN 142 134 134 ASN ASN A . n A 1 143 PRO 143 135 135 PRO PRO A . n A 1 144 GLU 144 136 136 GLU GLU A . n A 1 145 ALA 145 137 137 ALA ALA A . n A 1 146 ALA 146 138 138 ALA ALA A . n A 1 147 LYS 147 139 139 LYS LYS A . n A 1 148 LEU 148 140 140 LEU LEU A . n A 1 149 PHE 149 141 141 PHE PHE A . n A 1 150 VAL 150 142 142 VAL VAL A . n A 1 151 ASN 151 143 143 ASN ASN A . n A 1 152 ASP 152 144 144 ASP ASP A . n A 1 153 PRO 153 145 145 PRO PRO A . n A 1 154 LYS 154 146 146 LYS LYS A . n A 1 155 GLU 155 147 147 GLU GLU A . n A 1 156 TYR 156 148 148 TYR TYR A . n A 1 157 LYS 157 149 149 LYS LYS A . n A 1 158 LYS 158 150 150 LYS LYS A . n A 1 159 ARG 159 151 151 ARG ARG A . n A 1 160 VAL 160 152 152 VAL VAL A . n A 1 161 ARG 161 153 153 ARG ARG A . n A 1 162 LYS 162 154 154 LYS LYS A . n A 1 163 CYS 163 155 155 CYS CYS A . n A 1 164 VAL 164 156 ? ? ? A . n A 1 165 GLU 165 157 ? ? ? A . n A 1 166 SER 166 158 ? ? ? A . n A 1 167 LEU 167 159 ? ? ? A . n A 1 168 MET 168 160 ? ? ? A . n A 1 169 GLU 169 161 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 CL 1 202 202 CL CL A . D 4 HOH 1 301 301 HOH HOH A . D 4 HOH 2 302 303 HOH HOH A . D 4 HOH 3 303 304 HOH HOH A . D 4 HOH 4 304 305 HOH HOH A . D 4 HOH 5 305 308 HOH HOH A . D 4 HOH 6 306 309 HOH HOH A . D 4 HOH 7 307 307 HOH HOH A . D 4 HOH 8 308 311 HOH HOH A . D 4 HOH 9 309 310 HOH HOH A . D 4 HOH 10 310 313 HOH HOH A . D 4 HOH 11 311 314 HOH HOH A . D 4 HOH 12 312 315 HOH HOH A . D 4 HOH 13 313 335 HOH HOH A . D 4 HOH 14 314 317 HOH HOH A . D 4 HOH 15 315 320 HOH HOH A . D 4 HOH 16 316 312 HOH HOH A . D 4 HOH 17 317 321 HOH HOH A . D 4 HOH 18 318 328 HOH HOH A . D 4 HOH 19 319 319 HOH HOH A . D 4 HOH 20 320 318 HOH HOH A . D 4 HOH 21 321 325 HOH HOH A . D 4 HOH 22 322 326 HOH HOH A . D 4 HOH 23 323 323 HOH HOH A . D 4 HOH 24 324 316 HOH HOH A . D 4 HOH 25 325 343 HOH HOH A . D 4 HOH 26 326 333 HOH HOH A . D 4 HOH 27 327 324 HOH HOH A . D 4 HOH 28 328 327 HOH HOH A . D 4 HOH 29 329 346 HOH HOH A . D 4 HOH 30 330 332 HOH HOH A . D 4 HOH 31 331 331 HOH HOH A . D 4 HOH 32 332 339 HOH HOH A . D 4 HOH 33 333 345 HOH HOH A . D 4 HOH 34 334 329 HOH HOH A . D 4 HOH 35 335 336 HOH HOH A . D 4 HOH 36 336 338 HOH HOH A . D 4 HOH 37 337 334 HOH HOH A . D 4 HOH 38 338 340 HOH HOH A . D 4 HOH 39 339 347 HOH HOH A . D 4 HOH 40 340 344 HOH HOH A . D 4 HOH 41 341 351 HOH HOH A . D 4 HOH 42 342 342 HOH HOH A . D 4 HOH 43 343 341 HOH HOH A . D 4 HOH 44 344 349 HOH HOH A . D 4 HOH 45 345 368 HOH HOH A . D 4 HOH 46 346 352 HOH HOH A . D 4 HOH 47 347 322 HOH HOH A . D 4 HOH 48 348 348 HOH HOH A . D 4 HOH 49 349 354 HOH HOH A . D 4 HOH 50 350 337 HOH HOH A . D 4 HOH 51 351 355 HOH HOH A . D 4 HOH 52 352 330 HOH HOH A . D 4 HOH 53 353 350 HOH HOH A . D 4 HOH 54 354 358 HOH HOH A . D 4 HOH 55 355 371 HOH HOH A . D 4 HOH 56 356 356 HOH HOH A . D 4 HOH 57 357 362 HOH HOH A . D 4 HOH 58 358 360 HOH HOH A . D 4 HOH 59 359 357 HOH HOH A . D 4 HOH 60 360 353 HOH HOH A . D 4 HOH 61 361 363 HOH HOH A . D 4 HOH 62 362 361 HOH HOH A . D 4 HOH 63 363 372 HOH HOH A . D 4 HOH 64 364 391 HOH HOH A . D 4 HOH 65 365 359 HOH HOH A . D 4 HOH 66 366 367 HOH HOH A . D 4 HOH 67 367 365 HOH HOH A . D 4 HOH 68 368 369 HOH HOH A . D 4 HOH 69 369 373 HOH HOH A . D 4 HOH 70 370 364 HOH HOH A . D 4 HOH 71 371 378 HOH HOH A . D 4 HOH 72 372 375 HOH HOH A . D 4 HOH 73 373 388 HOH HOH A . D 4 HOH 74 374 370 HOH HOH A . D 4 HOH 75 375 386 HOH HOH A . D 4 HOH 76 376 382 HOH HOH A . D 4 HOH 77 377 366 HOH HOH A . D 4 HOH 78 378 374 HOH HOH A . D 4 HOH 79 379 381 HOH HOH A . D 4 HOH 80 380 377 HOH HOH A . D 4 HOH 81 381 387 HOH HOH A . D 4 HOH 82 382 380 HOH HOH A . D 4 HOH 83 383 379 HOH HOH A . D 4 HOH 84 384 384 HOH HOH A . D 4 HOH 85 385 385 HOH HOH A . D 4 HOH 86 386 383 HOH HOH A . D 4 HOH 87 387 390 HOH HOH A . D 4 HOH 88 388 376 HOH HOH A . D 4 HOH 89 389 389 HOH HOH A . D 4 HOH 90 390 392 HOH HOH A . D 4 HOH 91 391 394 HOH HOH A . D 4 HOH 92 392 409 HOH HOH A . D 4 HOH 93 393 393 HOH HOH A . D 4 HOH 94 394 397 HOH HOH A . D 4 HOH 95 395 395 HOH HOH A . D 4 HOH 96 396 396 HOH HOH A . D 4 HOH 97 397 398 HOH HOH A . D 4 HOH 98 398 400 HOH HOH A . D 4 HOH 99 399 399 HOH HOH A . D 4 HOH 100 400 402 HOH HOH A . D 4 HOH 101 401 403 HOH HOH A . D 4 HOH 102 402 405 HOH HOH A . D 4 HOH 103 403 406 HOH HOH A . D 4 HOH 104 404 408 HOH HOH A . D 4 HOH 105 405 401 HOH HOH A . D 4 HOH 106 406 413 HOH HOH A . D 4 HOH 107 407 412 HOH HOH A . D 4 HOH 108 408 410 HOH HOH A . D 4 HOH 109 409 416 HOH HOH A . D 4 HOH 110 410 411 HOH HOH A . D 4 HOH 111 411 407 HOH HOH A . D 4 HOH 112 412 417 HOH HOH A . D 4 HOH 113 413 414 HOH HOH A . D 4 HOH 114 414 404 HOH HOH A . D 4 HOH 115 415 415 HOH HOH A . D 4 HOH 116 416 419 HOH HOH A . D 4 HOH 117 417 421 HOH HOH A . D 4 HOH 118 418 418 HOH HOH A . D 4 HOH 119 419 425 HOH HOH A . D 4 HOH 120 420 420 HOH HOH A . D 4 HOH 121 421 422 HOH HOH A . D 4 HOH 122 422 430 HOH HOH A . D 4 HOH 123 423 306 HOH HOH A . D 4 HOH 124 424 424 HOH HOH A . D 4 HOH 125 425 427 HOH HOH A . D 4 HOH 126 426 426 HOH HOH A . D 4 HOH 127 427 429 HOH HOH A . D 4 HOH 128 428 431 HOH HOH A . D 4 HOH 129 429 436 HOH HOH A . D 4 HOH 130 430 439 HOH HOH A . D 4 HOH 131 431 428 HOH HOH A . D 4 HOH 132 432 447 HOH HOH A . D 4 HOH 133 433 435 HOH HOH A . D 4 HOH 134 434 441 HOH HOH A . D 4 HOH 135 435 432 HOH HOH A . D 4 HOH 136 436 442 HOH HOH A . D 4 HOH 137 437 423 HOH HOH A . D 4 HOH 138 438 434 HOH HOH A . D 4 HOH 139 439 433 HOH HOH A . D 4 HOH 140 440 440 HOH HOH A . D 4 HOH 141 441 437 HOH HOH A . D 4 HOH 142 442 438 HOH HOH A . D 4 HOH 143 443 444 HOH HOH A . D 4 HOH 144 444 443 HOH HOH A . D 4 HOH 145 445 446 HOH HOH A . D 4 HOH 146 446 448 HOH HOH A . D 4 HOH 147 447 445 HOH HOH A . D 4 HOH 148 448 449 HOH HOH A . D 4 HOH 149 449 453 HOH HOH A . D 4 HOH 150 450 450 HOH HOH A . D 4 HOH 151 451 451 HOH HOH A . D 4 HOH 152 452 452 HOH HOH A . D 4 HOH 153 453 454 HOH HOH A . D 4 HOH 154 454 456 HOH HOH A . D 4 HOH 155 455 455 HOH HOH A . D 4 HOH 156 456 458 HOH HOH A . D 4 HOH 157 457 457 HOH HOH A . D 4 HOH 158 458 459 HOH HOH A . D 4 HOH 159 459 461 HOH HOH A . D 4 HOH 160 460 460 HOH HOH A . D 4 HOH 161 461 462 HOH HOH A . D 4 HOH 162 462 464 HOH HOH A . D 4 HOH 163 463 463 HOH HOH A . D 4 HOH 164 464 465 HOH HOH A . D 4 HOH 165 465 466 HOH HOH A . D 4 HOH 166 466 470 HOH HOH A . D 4 HOH 167 467 473 HOH HOH A . D 4 HOH 168 468 467 HOH HOH A . D 4 HOH 169 469 475 HOH HOH A . D 4 HOH 170 470 469 HOH HOH A . D 4 HOH 171 471 471 HOH HOH A . D 4 HOH 172 472 468 HOH HOH A . D 4 HOH 173 473 472 HOH HOH A . D 4 HOH 174 474 479 HOH HOH A . D 4 HOH 175 475 476 HOH HOH A . D 4 HOH 176 476 474 HOH HOH A . D 4 HOH 177 477 477 HOH HOH A . D 4 HOH 178 478 478 HOH HOH A . D 4 HOH 179 479 480 HOH HOH A . D 4 HOH 180 480 481 HOH HOH A . D 4 HOH 181 481 482 HOH HOH A . D 4 HOH 182 482 483 HOH HOH A . D 4 HOH 183 483 484 HOH HOH A . D 4 HOH 184 484 485 HOH HOH A . D 4 HOH 185 485 486 HOH HOH A . D 4 HOH 186 486 487 HOH HOH A . D 4 HOH 187 487 488 HOH HOH A . D 4 HOH 188 488 302 HOH HOH A . D 4 HOH 189 489 491 HOH HOH A . D 4 HOH 190 490 489 HOH HOH A . D 4 HOH 191 491 490 HOH HOH A . D 4 HOH 192 492 492 HOH HOH A . D 4 HOH 193 493 494 HOH HOH A . D 4 HOH 194 494 493 HOH HOH A . D 4 HOH 195 495 496 HOH HOH A . D 4 HOH 196 496 495 HOH HOH A . D 4 HOH 197 497 497 HOH HOH A . D 4 HOH 198 498 499 HOH HOH A . D 4 HOH 199 499 503 HOH HOH A . D 4 HOH 200 500 500 HOH HOH A . D 4 HOH 201 501 498 HOH HOH A . D 4 HOH 202 502 504 HOH HOH A . D 4 HOH 203 503 501 HOH HOH A . D 4 HOH 204 504 502 HOH HOH A . D 4 HOH 205 505 506 HOH HOH A . D 4 HOH 206 506 508 HOH HOH A . D 4 HOH 207 507 507 HOH HOH A . D 4 HOH 208 508 505 HOH HOH A . D 4 HOH 209 509 510 HOH HOH A . D 4 HOH 210 510 512 HOH HOH A . D 4 HOH 211 511 511 HOH HOH A . D 4 HOH 212 512 513 HOH HOH A . D 4 HOH 213 513 509 HOH HOH A . D 4 HOH 214 514 515 HOH HOH A . D 4 HOH 215 515 514 HOH HOH A . D 4 HOH 216 516 517 HOH HOH A . D 4 HOH 217 517 516 HOH HOH A . D 4 HOH 218 518 518 HOH HOH A . D 4 HOH 219 519 519 HOH HOH A . D 4 HOH 220 520 523 HOH HOH A . D 4 HOH 221 521 520 HOH HOH A . D 4 HOH 222 522 522 HOH HOH A . D 4 HOH 223 523 525 HOH HOH A . D 4 HOH 224 524 524 HOH HOH A . D 4 HOH 225 525 526 HOH HOH A . D 4 HOH 226 526 527 HOH HOH A . D 4 HOH 227 527 528 HOH HOH A . D 4 HOH 228 528 530 HOH HOH A . D 4 HOH 229 529 533 HOH HOH A . D 4 HOH 230 530 521 HOH HOH A . D 4 HOH 231 531 529 HOH HOH A . D 4 HOH 232 532 531 HOH HOH A . D 4 HOH 233 533 535 HOH HOH A . D 4 HOH 234 534 532 HOH HOH A . D 4 HOH 235 535 536 HOH HOH A . D 4 HOH 236 536 537 HOH HOH A . D 4 HOH 237 537 534 HOH HOH A . D 4 HOH 238 538 538 HOH HOH A . D 4 HOH 239 539 539 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2390 ? 1 MORE -36 ? 1 'SSA (A^2)' 14450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 446 ? D HOH . 2 1 A HOH 448 ? D HOH . 3 1 A HOH 463 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 539 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 310 ? 1_555 173.8 ? 2 O ? D HOH . ? A HOH 539 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 360 ? 1_555 91.0 ? 3 O ? D HOH . ? A HOH 310 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 360 ? 1_555 88.0 ? 4 O ? D HOH . ? A HOH 539 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 365 ? 1_555 88.4 ? 5 O ? D HOH . ? A HOH 310 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 365 ? 1_555 85.4 ? 6 O ? D HOH . ? A HOH 360 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 365 ? 1_555 91.8 ? 7 O ? D HOH . ? A HOH 539 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 490 ? 4_544 89.1 ? 8 O ? D HOH . ? A HOH 310 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 490 ? 4_544 97.1 ? 9 O ? D HOH . ? A HOH 360 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 490 ? 4_544 90.2 ? 10 O ? D HOH . ? A HOH 365 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 490 ? 4_544 176.8 ? 11 O ? D HOH . ? A HOH 539 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 482 ? 4_544 91.9 ? 12 O ? D HOH . ? A HOH 310 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 482 ? 4_544 89.4 ? 13 O ? D HOH . ? A HOH 360 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 482 ? 4_544 175.3 ? 14 O ? D HOH . ? A HOH 365 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 482 ? 4_544 91.9 ? 15 O ? D HOH . ? A HOH 490 ? 4_544 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 482 ? 4_544 86.1 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-03-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 5.0225 -2.2217 -16.3882 0.1484 0.0862 0.1115 0.0179 0.0116 0.0110 7.7442 2.9808 3.6356 -0.9559 1.2741 -0.9067 0.0268 -0.1521 0.1208 0.4518 0.2920 -0.1426 -0.3356 0.0244 0.1837 'X-RAY DIFFRACTION' 2 ? refined -2.1980 -6.5492 -9.2561 0.0962 0.0628 0.0969 0.0089 0.0114 0.0018 2.0014 3.2162 1.0329 0.5808 -0.0556 -0.3064 -0.1228 0.0654 0.0761 0.0768 0.0068 0.0436 -0.2681 -0.0748 -0.0502 'X-RAY DIFFRACTION' 3 ? refined -3.0621 -8.6497 -5.7289 0.1085 0.0976 0.1163 0.0016 0.0125 0.0015 3.4427 2.9146 1.1531 0.3621 0.2683 0.2988 -0.1328 -0.0523 0.1921 -0.0531 -0.1954 0.1080 -0.0920 0.0038 -0.0747 'X-RAY DIFFRACTION' 4 ? refined 1.2288 -15.8340 -3.2418 0.1239 0.0992 0.1020 -0.0034 0.0008 0.0282 2.6354 1.7069 0.4169 1.0920 -0.3710 0.3405 0.0214 -0.0572 0.0326 -0.1622 0.0788 0.0950 0.2024 0.1089 0.0420 'X-RAY DIFFRACTION' 5 ? refined 3.9710 -21.4148 -7.7198 0.1228 0.1348 0.1396 -0.0109 0.0015 0.0217 4.2679 3.1293 6.0387 2.5747 -4.8656 -2.0528 -0.0371 0.0862 -0.0487 0.0815 -0.0807 -0.0175 -0.0623 0.3480 -0.2225 'X-RAY DIFFRACTION' 6 ? refined 8.0933 -13.2433 -13.2355 0.1098 0.1227 0.1039 0.0326 0.0223 0.0165 2.2926 2.9137 2.0047 0.6801 1.5477 -0.1602 -0.1468 0.1123 0.0438 -0.0689 -0.0006 0.0116 0.1050 -0.1126 -0.0799 'X-RAY DIFFRACTION' 7 ? refined -4.8268 -22.7060 -13.4517 0.1211 0.1756 0.1925 0.0325 0.0217 0.0005 4.0262 7.7352 6.4044 3.9460 -0.0501 -2.9363 -0.0167 0.0493 -0.0760 0.3029 -0.0964 -0.1050 -0.6778 0.4228 0.3762 'X-RAY DIFFRACTION' 8 ? refined -17.2789 -24.9977 -9.5279 0.0968 0.1227 0.1091 -0.0293 0.0173 0.0306 8.3303 2.1222 5.2026 -0.3058 1.1410 2.4359 0.2075 -0.1075 -0.0997 -0.0524 0.1372 0.0470 -0.0394 0.0517 -0.3726 'X-RAY DIFFRACTION' 9 ? refined -17.6477 -15.6256 -4.2937 0.2815 0.3183 0.3378 -0.0195 0.0925 -0.1173 3.7869 4.7499 2.6084 4.1663 2.7455 3.3411 0.2631 -0.2302 -0.0129 -1.1753 1.0493 0.0494 0.0278 -0.3553 -0.2712 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 21 A 36 ;chain 'A' and (resid 21 through 36 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 37 A 60 ;chain 'A' and (resid 37 through 60 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 61 A 70 ;chain 'A' and (resid 61 through 70 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 71 A 96 ;chain 'A' and (resid 71 through 96 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 97 A 106 ;chain 'A' and (resid 97 through 106 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 107 A 120 ;chain 'A' and (resid 107 through 120 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 121 A 133 ;chain 'A' and (resid 121 through 133 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 134 A 151 ;chain 'A' and (resid 134 through 151 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 152 A 163 ;chain 'A' and (resid 152 through 155 ) ; ? ? ? ? ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 125 ? ? O A HOH 301 ? ? 2.05 2 1 O A HOH 439 ? ? O A HOH 481 ? ? 2.12 3 1 O A HOH 529 ? ? O A HOH 533 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 361 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 464 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_544 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 104 ? ? -128.62 -114.74 2 1 ASP A 144 ? ? -154.00 79.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 10 ? CG ? A LYS 18 CG 2 1 Y 1 A LYS 10 ? CD ? A LYS 18 CD 3 1 Y 1 A LYS 10 ? CE ? A LYS 18 CE 4 1 Y 1 A LYS 10 ? NZ ? A LYS 18 NZ 5 1 Y 1 A SER 13 ? OG ? A SER 21 OG 6 1 Y 1 A LYS 28 ? CG ? A LYS 36 CG 7 1 Y 1 A LYS 28 ? CD ? A LYS 36 CD 8 1 Y 1 A LYS 28 ? CE ? A LYS 36 CE 9 1 Y 1 A LYS 28 ? NZ ? A LYS 36 NZ 10 1 Y 1 A LYS 82 ? CG ? A LYS 90 CG 11 1 Y 1 A LYS 82 ? CD ? A LYS 90 CD 12 1 Y 1 A LYS 82 ? CE ? A LYS 90 CE 13 1 Y 1 A LYS 82 ? NZ ? A LYS 90 NZ 14 1 Y 1 A LYS 86 ? CG ? A LYS 94 CG 15 1 Y 1 A LYS 86 ? CD ? A LYS 94 CD 16 1 Y 1 A LYS 86 ? CE ? A LYS 94 CE 17 1 Y 1 A LYS 86 ? NZ ? A LYS 94 NZ 18 1 Y 1 A ARG 153 ? CG ? A ARG 161 CG 19 1 Y 1 A ARG 153 ? CD ? A ARG 161 CD 20 1 Y 1 A ARG 153 ? NE ? A ARG 161 NE 21 1 Y 1 A ARG 153 ? CZ ? A ARG 161 CZ 22 1 Y 1 A ARG 153 ? NH1 ? A ARG 161 NH1 23 1 Y 1 A ARG 153 ? NH2 ? A ARG 161 NH2 24 1 Y 1 A LYS 154 ? CG ? A LYS 162 CG 25 1 Y 1 A LYS 154 ? CD ? A LYS 162 CD 26 1 Y 1 A LYS 154 ? CE ? A LYS 162 CE 27 1 Y 1 A LYS 154 ? NZ ? A LYS 162 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A HIS -1 ? A HIS 7 8 1 Y 1 A HIS 0 ? A HIS 8 9 1 Y 1 A MET 1 ? A MET 9 10 1 Y 1 A LEU 2 ? A LEU 10 11 1 Y 1 A ASN 3 ? A ASN 11 12 1 Y 1 A ASN 4 ? A ASN 12 13 1 Y 1 A ASN 5 ? A ASN 13 14 1 Y 1 A GLN 6 ? A GLN 14 15 1 Y 1 A ASN 7 ? A ASN 15 16 1 Y 1 A ASN 8 ? A ASN 16 17 1 Y 1 A LYS 9 ? A LYS 17 18 1 Y 1 A VAL 156 ? A VAL 164 19 1 Y 1 A GLU 157 ? A GLU 165 20 1 Y 1 A SER 158 ? A SER 166 21 1 Y 1 A LEU 159 ? A LEU 167 22 1 Y 1 A MET 160 ? A MET 168 23 1 Y 1 A GLU 161 ? A GLU 169 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #