HEADER PROTEIN BINDING 02-MAR-17 5V1U TITLE TBIB1 IN COMPLEX WITH THE TBIA(BETA) LEADER PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBIB1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TBIA(BETA) THR(-5)GLU LEADER; COMPND 7 CHAIN: E, F, G, H; COMPND 8 FRAGMENT: UNP RESIDUES 1-20; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBACULUM TERRENUM (STRAIN ATCC BAA-798 / SOURCE 3 YNP1); SOURCE 4 ORGANISM_TAXID: 525904; SOURCE 5 STRAIN: ATCC BAA-798 / YNP1; SOURCE 6 GENE: TTER_2832; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOBACULUM TERRENUM; SOURCE 12 ORGANISM_TAXID: 525904 KEYWDS LASSO PEPTIDE, RIPP, PEPTIDE BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.CHEKAN,S.K.NAIR REVDAT 4 06-MAR-24 5V1U 1 LINK REVDAT 3 25-DEC-19 5V1U 1 JRNL REVDAT 2 13-NOV-19 5V1U 1 JRNL REVDAT 1 05-SEP-18 5V1U 0 JRNL AUTH J.R.CHEKAN,C.ONGPIPATTANAKUL,S.K.NAIR JRNL TITL STERIC COMPLEMENTARITY DIRECTS SEQUENCE PROMISCUOUS LEADER JRNL TITL 2 BINDING IN RIPP BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 24049 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31719203 JRNL DOI 10.1073/PNAS.1908364116 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 21979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2603 - 4.1011 0.98 2930 173 0.1682 0.1809 REMARK 3 2 4.1011 - 3.2563 0.81 2433 111 0.1813 0.2305 REMARK 3 3 3.2563 - 2.8450 0.98 2960 146 0.2106 0.2610 REMARK 3 4 2.8450 - 2.5850 0.98 2986 152 0.2194 0.2774 REMARK 3 5 2.5850 - 2.3998 0.98 2939 133 0.2278 0.2770 REMARK 3 6 2.3998 - 2.2584 0.84 2504 141 0.2378 0.3006 REMARK 3 7 2.2584 - 2.1453 0.70 2103 106 0.2636 0.3357 REMARK 3 8 2.1453 - 2.0519 0.69 2069 93 0.2178 0.2631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3244 REMARK 3 ANGLE : 0.853 4402 REMARK 3 CHIRALITY : 0.038 517 REMARK 3 PLANARITY : 0.005 563 REMARK 3 DIHEDRAL : 10.768 1201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24200 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% ISOPROPANOL, 0.05 M ZINC ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE (PH 6.5), 6 MG/ML PROTEIN, 1 MM REMARK 280 TBIA(BETA) T(-5)E, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 85 REMARK 465 ASP A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 87 REMARK 465 ALA B 88 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 ASP C 86 REMARK 465 GLU C 87 REMARK 465 ALA C 88 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 TYR D 84 REMARK 465 ALA D 85 REMARK 465 ASP D 86 REMARK 465 GLU D 87 REMARK 465 ALA D 88 REMARK 465 GLU E -5 REMARK 465 ARG E -4 REMARK 465 LEU E -3 REMARK 465 THR E -2 REMARK 465 MET F -21 REMARK 465 LEU F -3 REMARK 465 THR F -2 REMARK 465 MET G -21 REMARK 465 THR G -20 REMARK 465 LEU G -3 REMARK 465 THR G -2 REMARK 465 MET H -21 REMARK 465 THR H -20 REMARK 465 LYS H -19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 241 O HOH C 243 2.11 REMARK 500 OE2 GLU C 79 O HOH C 201 2.12 REMARK 500 O HOH F 107 O HOH F 118 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -117.24 55.10 REMARK 500 ASP B 13 -113.99 54.27 REMARK 500 ASP C 13 -114.73 56.70 REMARK 500 ASP D 13 -111.70 54.50 REMARK 500 THR E -20 45.94 -141.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD2 REMARK 620 2 GLU A 82 OE2 81.0 REMARK 620 3 ASP D 5 OD2 134.1 61.9 REMARK 620 4 GLU D 82 OE2 133.9 61.3 0.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 NE2 REMARK 620 2 GLU A 41 OE1 116.8 REMARK 620 3 GLU G -5 OE1 99.1 32.9 REMARK 620 4 HOH G 108 O 126.5 107.1 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE2 REMARK 620 2 ASP A 51 OD2 101.8 REMARK 620 3 HOH A 235 O 75.2 32.9 REMARK 620 4 GLU C 65 OE2 74.0 36.9 5.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 65 OE2 REMARK 620 2 GLU C 47 OE1 41.8 REMARK 620 3 GLU C 47 OE2 39.8 2.5 REMARK 620 4 ASP C 51 OD2 42.2 4.1 3.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 5 OD2 REMARK 620 2 GLU B 82 OE1 118.4 REMARK 620 3 GLU B 82 OE2 79.2 53.8 REMARK 620 4 ASP C 5 OD2 171.7 68.5 103.1 REMARK 620 5 GLU C 82 OE1 63.8 79.7 92.8 123.6 REMARK 620 6 GLU C 82 OE2 97.2 97.7 141.3 85.9 53.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 11 NE2 REMARK 620 2 GLU B 41 OE1 98.4 REMARK 620 3 GLU B 41 OE2 105.7 54.8 REMARK 620 4 GLU H -5 OE1 118.2 35.1 26.2 REMARK 620 5 HOH H 104 O 110.8 106.9 141.5 119.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 47 OE1 REMARK 620 2 GLU B 47 OE2 57.0 REMARK 620 3 ASP B 51 OD2 109.1 108.9 REMARK 620 4 GLU D 65 OE2 36.0 52.8 77.5 REMARK 620 5 HOH D 206 O 99.0 152.2 91.3 117.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 65 OE1 REMARK 620 2 GLU B 65 OE2 52.3 REMARK 620 3 GLU D 47 OE1 45.6 80.7 REMARK 620 4 GLU D 47 OE2 43.7 78.1 2.6 REMARK 620 5 ASP D 51 OD2 42.3 79.7 3.8 3.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 79 OE2 REMARK 620 2 HOH B 241 O 124.1 REMARK 620 3 ASP D 67 OD1 120.5 112.2 REMARK 620 4 HOH D 201 O 81.3 85.5 85.6 REMARK 620 5 HOH D 211 O 105.0 100.8 80.3 165.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 11 NE2 REMARK 620 2 GLU C 41 OE1 132.3 REMARK 620 3 HOH C 232 O 95.9 107.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 11 NE2 REMARK 620 2 GLU D 41 OE2 119.4 REMARK 620 3 HOH D 203 O 109.1 111.6 REMARK 620 4 HOH D 227 O 110.7 96.0 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V1V RELATED DB: PDB DBREF 5V1U A 1 88 UNP D1CIZ5 D1CIZ5_THET1 1 88 DBREF 5V1U B 1 88 UNP D1CIZ5 D1CIZ5_THET1 1 88 DBREF 5V1U C 1 88 UNP D1CIZ5 D1CIZ5_THET1 1 88 DBREF 5V1U D 1 88 UNP D1CIZ5 D1CIZ5_THET1 1 88 DBREF 5V1U E -21 -2 UNP D1CIY7 D1CIY7_THET1 1 20 DBREF 5V1U F -21 -2 UNP D1CIY7 D1CIY7_THET1 1 20 DBREF 5V1U G -21 -2 UNP D1CIY7 D1CIY7_THET1 1 20 DBREF 5V1U H -21 -2 UNP D1CIY7 D1CIY7_THET1 1 20 SEQADV 5V1U SER A -2 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ASN A -1 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ALA A 0 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U SER B -2 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ASN B -1 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ALA B 0 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U SER C -2 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ASN C -1 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ALA C 0 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U SER D -2 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ASN D -1 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U ALA D 0 UNP D1CIZ5 EXPRESSION TAG SEQADV 5V1U GLU E -5 UNP D1CIY7 THR 17 CONFLICT SEQADV 5V1U GLU F -5 UNP D1CIY7 THR 17 CONFLICT SEQADV 5V1U GLU G -5 UNP D1CIY7 THR 17 CONFLICT SEQADV 5V1U GLU H -5 UNP D1CIY7 THR 17 CONFLICT SEQRES 1 A 91 SER ASN ALA MET LYS ILE SER ASP ALA VAL VAL SER ALA SEQRES 2 A 91 HIS ILE ASP ASP GLU VAL VAL LEU LEU HIS LEU GLN THR SEQRES 3 A 91 GLY THR TYR PHE GLY LEU ASP ALA VAL GLY SER ARG ILE SEQRES 4 A 91 TRP SER LEU LEU GLU GLU GLY LYS ARG PRO GLU GLU ILE SEQRES 5 A 91 VAL ASP ALA ILE CYS ALA GLU TYR SER VAL ASP ARG PRO SEQRES 6 A 91 THR VAL GLU ARG ASP LEU ARG ASP PHE LEU ARG ALA LEU SEQRES 7 A 91 ALA ASN LYS GLU LEU LEU GLU GLY TYR ALA ASP GLU ALA SEQRES 1 B 91 SER ASN ALA MET LYS ILE SER ASP ALA VAL VAL SER ALA SEQRES 2 B 91 HIS ILE ASP ASP GLU VAL VAL LEU LEU HIS LEU GLN THR SEQRES 3 B 91 GLY THR TYR PHE GLY LEU ASP ALA VAL GLY SER ARG ILE SEQRES 4 B 91 TRP SER LEU LEU GLU GLU GLY LYS ARG PRO GLU GLU ILE SEQRES 5 B 91 VAL ASP ALA ILE CYS ALA GLU TYR SER VAL ASP ARG PRO SEQRES 6 B 91 THR VAL GLU ARG ASP LEU ARG ASP PHE LEU ARG ALA LEU SEQRES 7 B 91 ALA ASN LYS GLU LEU LEU GLU GLY TYR ALA ASP GLU ALA SEQRES 1 C 91 SER ASN ALA MET LYS ILE SER ASP ALA VAL VAL SER ALA SEQRES 2 C 91 HIS ILE ASP ASP GLU VAL VAL LEU LEU HIS LEU GLN THR SEQRES 3 C 91 GLY THR TYR PHE GLY LEU ASP ALA VAL GLY SER ARG ILE SEQRES 4 C 91 TRP SER LEU LEU GLU GLU GLY LYS ARG PRO GLU GLU ILE SEQRES 5 C 91 VAL ASP ALA ILE CYS ALA GLU TYR SER VAL ASP ARG PRO SEQRES 6 C 91 THR VAL GLU ARG ASP LEU ARG ASP PHE LEU ARG ALA LEU SEQRES 7 C 91 ALA ASN LYS GLU LEU LEU GLU GLY TYR ALA ASP GLU ALA SEQRES 1 D 91 SER ASN ALA MET LYS ILE SER ASP ALA VAL VAL SER ALA SEQRES 2 D 91 HIS ILE ASP ASP GLU VAL VAL LEU LEU HIS LEU GLN THR SEQRES 3 D 91 GLY THR TYR PHE GLY LEU ASP ALA VAL GLY SER ARG ILE SEQRES 4 D 91 TRP SER LEU LEU GLU GLU GLY LYS ARG PRO GLU GLU ILE SEQRES 5 D 91 VAL ASP ALA ILE CYS ALA GLU TYR SER VAL ASP ARG PRO SEQRES 6 D 91 THR VAL GLU ARG ASP LEU ARG ASP PHE LEU ARG ALA LEU SEQRES 7 D 91 ALA ASN LYS GLU LEU LEU GLU GLY TYR ALA ASP GLU ALA SEQRES 1 E 20 MET THR LYS THR TYR THR ALA PRO THR LEU VAL GLU TYR SEQRES 2 E 20 GLY GLY LEU GLU ARG LEU THR SEQRES 1 F 20 MET THR LYS THR TYR THR ALA PRO THR LEU VAL GLU TYR SEQRES 2 F 20 GLY GLY LEU GLU ARG LEU THR SEQRES 1 G 20 MET THR LYS THR TYR THR ALA PRO THR LEU VAL GLU TYR SEQRES 2 G 20 GLY GLY LEU GLU ARG LEU THR SEQRES 1 H 20 MET THR LYS THR TYR THR ALA PRO THR LEU VAL GLU TYR SEQRES 2 H 20 GLY GLY LEU GLU ARG LEU THR HET ZN A 101 1 HET ZN A 102 1 HET ZN B 101 1 HET ZN B 102 1 HET ZN B 103 1 HET ZN B 104 1 HET ZN B 105 1 HET ZN C 101 1 HET ZN C 102 1 HET ZN C 103 1 HET ZN D 101 1 HETNAM ZN ZINC ION FORMUL 9 ZN 11(ZN 2+) FORMUL 20 HOH *213(H2 O) HELIX 1 AA1 ASP A 30 GLU A 42 1 13 HELIX 2 AA2 ARG A 45 GLU A 56 1 12 HELIX 3 AA3 ASP A 60 LYS A 78 1 19 HELIX 4 AA4 ASP B 30 GLU B 42 1 13 HELIX 5 AA5 ARG B 45 GLU B 56 1 12 HELIX 6 AA6 ASP B 60 LYS B 78 1 19 HELIX 7 AA7 ASP C 30 GLU C 42 1 13 HELIX 8 AA8 ARG C 45 TYR C 57 1 13 HELIX 9 AA9 ASP C 60 LYS C 78 1 19 HELIX 10 AB1 ASP D 30 GLU D 42 1 13 HELIX 11 AB2 ARG D 45 TYR D 57 1 13 HELIX 12 AB3 ASP D 60 LYS D 78 1 19 SHEET 1 AA1 2 LYS A 2 ILE A 3 0 SHEET 2 AA1 2 LEU A 81 GLU A 82 -1 O GLU A 82 N LYS A 2 SHEET 1 AA2 4 VAL A 7 ILE A 12 0 SHEET 2 AA2 4 GLU A 15 HIS A 20 -1 O VAL A 17 N ALA A 10 SHEET 3 AA2 4 THR A 25 LEU A 29 -1 O PHE A 27 N LEU A 18 SHEET 4 AA2 4 LEU E -12 GLY E -7 -1 O VAL E -11 N GLY A 28 SHEET 1 AA3 2 TYR A 57 SER A 58 0 SHEET 2 AA3 2 LYS E -19 THR E -18 1 O LYS E -19 N SER A 58 SHEET 1 AA4 2 LYS B 2 ILE B 3 0 SHEET 2 AA4 2 LEU B 81 GLU B 82 -1 O GLU B 82 N LYS B 2 SHEET 1 AA5 4 VAL B 7 ILE B 12 0 SHEET 2 AA5 4 GLU B 15 HIS B 20 -1 O VAL B 17 N ALA B 10 SHEET 3 AA5 4 THR B 25 LEU B 29 -1 O THR B 25 N HIS B 20 SHEET 4 AA5 4 LEU F -12 GLY F -7 -1 O GLY F -8 N TYR B 26 SHEET 1 AA6 2 TYR B 57 SER B 58 0 SHEET 2 AA6 2 LYS F -19 THR F -18 1 O LYS F -19 N SER B 58 SHEET 1 AA7 2 LYS C 2 ILE C 3 0 SHEET 2 AA7 2 LEU C 81 GLU C 82 -1 O GLU C 82 N LYS C 2 SHEET 1 AA8 4 VAL C 7 ILE C 12 0 SHEET 2 AA8 4 GLU C 15 HIS C 20 -1 O VAL C 17 N ALA C 10 SHEET 3 AA8 4 THR C 25 LEU C 29 -1 O THR C 25 N HIS C 20 SHEET 4 AA8 4 LEU G -12 GLY G -7 -1 O VAL G -11 N GLY C 28 SHEET 1 AA9 2 LYS D 2 ILE D 3 0 SHEET 2 AA9 2 LEU D 81 GLU D 82 -1 O GLU D 82 N LYS D 2 SHEET 1 AB1 4 VAL D 7 ILE D 12 0 SHEET 2 AB1 4 GLU D 15 HIS D 20 -1 O VAL D 17 N ALA D 10 SHEET 3 AB1 4 THR D 25 LEU D 29 -1 O THR D 25 N HIS D 20 SHEET 4 AB1 4 LEU H -12 GLY H -7 -1 O VAL H -11 N GLY D 28 LINK OD2 ASP A 5 ZN ZN A 102 1555 1555 2.46 LINK NE2 HIS A 11 ZN ZN A 101 1555 1555 1.90 LINK OE1 GLU A 41 ZN ZN A 101 1555 1555 2.06 LINK OE2 GLU A 47 ZN ZN C 103 1555 1545 1.89 LINK OD2 ASP A 51 ZN ZN C 103 1555 1545 1.95 LINK OE2 GLU A 65 ZN ZN C 102 1555 1545 2.28 LINK OE2 GLU A 82 ZN ZN A 102 1555 1555 2.22 LINK ZN ZN A 101 OE1 GLU G -5 1655 1555 2.23 LINK ZN ZN A 101 O HOH G 108 1555 1455 2.40 LINK ZN ZN A 102 OD2 ASP D 5 1665 1555 1.97 LINK ZN ZN A 102 OE2 GLU D 82 1665 1555 2.38 LINK O HOH A 235 ZN ZN C 103 1565 1555 2.41 LINK OD2 ASP B 5 ZN ZN B 101 1555 1555 2.46 LINK NE2 HIS B 11 ZN ZN B 103 1555 1555 1.94 LINK OE1 GLU B 41 ZN ZN B 103 1555 1555 2.27 LINK OE2 GLU B 41 ZN ZN B 103 1555 1555 2.50 LINK OE1 GLU B 47 ZN ZN B 104 1555 1555 2.51 LINK OE2 GLU B 47 ZN ZN B 104 1555 1555 2.01 LINK OD2 ASP B 51 ZN ZN B 104 1555 1555 1.92 LINK OE1 GLU B 65 ZN ZN B 105 1555 1555 2.66 LINK OE2 GLU B 65 ZN ZN B 105 1555 1555 2.22 LINK OE2 GLU B 79 ZN ZN B 102 1555 1555 1.88 LINK OE1 GLU B 82 ZN ZN B 101 1555 1555 2.62 LINK OE2 GLU B 82 ZN ZN B 101 1555 1555 2.14 LINK ZN ZN B 101 OD2 ASP C 5 1555 1555 2.16 LINK ZN ZN B 101 OE1 GLU C 82 1555 1555 2.67 LINK ZN ZN B 101 OE2 GLU C 82 1555 1555 2.13 LINK ZN ZN B 102 O HOH B 241 1555 1555 2.18 LINK ZN ZN B 102 OD1 ASP D 67 1555 1555 2.13 LINK ZN ZN B 102 O HOH D 201 1555 1555 2.40 LINK ZN ZN B 102 O HOH D 211 1555 1555 2.47 LINK ZN ZN B 103 OE1 GLU H -5 1565 1555 2.24 LINK ZN ZN B 103 O HOH H 104 1555 1545 2.09 LINK ZN ZN B 104 OE2 GLU D 65 1655 1555 2.40 LINK ZN ZN B 104 O HOH D 206 1555 1455 2.09 LINK ZN ZN B 105 OE1 GLU D 47 1655 1555 2.38 LINK ZN ZN B 105 OE2 GLU D 47 1655 1555 2.10 LINK ZN ZN B 105 OD2 ASP D 51 1655 1555 2.01 LINK NE2 HIS C 11 ZN ZN C 101 1555 1555 2.07 LINK OE1 GLU C 41 ZN ZN C 101 1555 1555 1.97 LINK OE1 GLU C 47 ZN ZN C 102 1555 1555 2.36 LINK OE2 GLU C 47 ZN ZN C 102 1555 1555 2.08 LINK OD2 ASP C 51 ZN ZN C 102 1555 1555 2.09 LINK OE2 GLU C 65 ZN ZN C 103 1555 1555 2.63 LINK ZN ZN C 101 O HOH C 232 1555 1555 2.11 LINK NE2 HIS D 11 ZN ZN D 101 1555 1555 2.00 LINK OE2 GLU D 41 ZN ZN D 101 1555 1555 1.89 LINK ZN ZN D 101 O HOH D 203 1555 1555 2.45 LINK ZN ZN D 101 O HOH D 227 1555 1555 2.18 SITE 1 AC1 4 HIS A 11 GLU A 41 GLU G -5 HOH G 108 SITE 1 AC2 4 ASP A 5 GLU A 82 ASP D 5 GLU D 82 SITE 1 AC3 4 ASP B 5 GLU B 82 ASP C 5 GLU C 82 SITE 1 AC4 5 GLU B 79 HOH B 241 ASP D 67 HOH D 201 SITE 2 AC4 5 HOH D 211 SITE 1 AC5 4 HIS B 11 GLU B 41 GLU H -5 HOH H 104 SITE 1 AC6 4 GLU B 47 ASP B 51 GLU D 65 HOH D 206 SITE 1 AC7 3 GLU B 65 GLU D 47 ASP D 51 SITE 1 AC8 3 HIS C 11 GLU C 41 HOH C 232 SITE 1 AC9 4 GLU A 65 HOH A 226 GLU C 47 ASP C 51 SITE 1 AD1 4 GLU A 47 ASP A 51 HOH A 235 GLU C 65 SITE 1 AD2 4 HIS D 11 GLU D 41 HOH D 203 HOH D 227 CRYST1 43.155 48.630 55.287 78.30 66.88 88.12 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023172 -0.000760 -0.009954 0.00000 SCALE2 0.000000 0.020575 -0.004347 0.00000 SCALE3 0.000000 0.000000 0.020102 0.00000