HEADER CELL INVASION 03-MAR-17 5V2B TITLE PEPTIDE 38148 MODIFIED FROM FRAGMENT 41-60 OF PLASMODIUM FALCIPARUM TITLE 2 THROMBOSPONDIN-RELATED SPOROZOITE PROTEIN (TRSP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOSPONDIN-RELATED SPOROZOITE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 41-60; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 36329 KEYWDS MODIFIED PEPTIDE, CHEMICALLY SYNTHESIZED, PF-TRSP PROTEIN, ALPHA- KEYWDS 2 HELIX RESIDUES 8-18, CELL INVASION EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR A.BERMUDEZ,M.E.PATARROYO REVDAT 2 14-JUN-23 5V2B 1 REMARK REVDAT 1 08-AUG-18 5V2B 0 JRNL AUTH A.BERMUDEZ,M.E.PATARROYO JRNL TITL PEPTIDE 38148 MODIFIED FROM FRAGMENT 41-60 OF PLASMODIUM JRNL TITL 2 FALCIPARUM THROMBOSPONDIN-RELATED SPOROZOITE PROTEIN (TRSP) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 220 NOES REMARK 4 REMARK 4 5V2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226679. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295; 285; 305; 315 REMARK 210 PH : 3.7; 3.7; 3.7; 3.7 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 16.6 MG/ML 38148, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : INSIGHT II REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 2 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 3 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 4 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 5 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 6 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 7 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 8 GLU A 17 CD GLU A 17 OE2 0.119 REMARK 500 9 GLU A 17 CD GLU A 17 OE2 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 ARG A 4 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 1 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 1 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 2 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 2 ARG A 4 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 2 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 2 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 3 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 3 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 3 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 4 ASP A 2 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 4 ARG A 4 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 TYR A 5 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 4 LYS A 7 N - CA - CB ANGL. DEV. = 13.8 DEGREES REMARK 500 4 LYS A 7 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 4 PHE A 9 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 4 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 4 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 4 ALA A 19 CB - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 4 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 5 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 5 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 5 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 5 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 6 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 6 ARG A 4 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 6 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 6 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 7 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 7 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 LYS A 7 N - CA - CB ANGL. DEV. = 20.8 DEGREES REMARK 500 7 SER A 8 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 7 ILE A 10 C - N - CA ANGL. DEV. = 17.7 DEGREES REMARK 500 7 ILE A 10 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 7 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 7 HIS A 18 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 7 ALA A 19 CB - CA - C ANGL. DEV. = 9.6 DEGREES REMARK 500 7 HIS A 20 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 8 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 8 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ASN A 6 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 8 LYS A 7 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 8 ASN A 11 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 58 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 72.35 -161.50 REMARK 500 1 ASN A 6 -37.44 -143.02 REMARK 500 1 ILE A 10 61.00 64.31 REMARK 500 1 HIS A 18 80.04 58.05 REMARK 500 2 ASP A 2 70.72 -159.49 REMARK 500 2 ASN A 6 -3.82 -168.11 REMARK 500 2 ILE A 10 66.52 80.16 REMARK 500 2 HIS A 18 80.31 57.82 REMARK 500 3 ASP A 2 70.92 -160.90 REMARK 500 3 ASN A 6 -37.50 -143.05 REMARK 500 3 HIS A 18 80.09 57.95 REMARK 500 4 ASP A 2 74.78 -160.04 REMARK 500 4 ASN A 6 83.15 67.09 REMARK 500 4 PHE A 9 6.21 92.33 REMARK 500 4 ILE A 10 71.62 58.68 REMARK 500 4 HIS A 18 77.04 59.83 REMARK 500 4 ALA A 19 -116.79 -141.85 REMARK 500 5 ASP A 2 80.52 -163.13 REMARK 500 5 THR A 3 54.28 -106.33 REMARK 500 5 TYR A 5 38.25 -87.63 REMARK 500 5 ASN A 6 -38.06 -150.01 REMARK 500 5 LYS A 7 55.93 70.39 REMARK 500 5 ILE A 10 60.12 65.04 REMARK 500 5 HIS A 18 -103.30 -117.92 REMARK 500 5 ALA A 19 96.18 63.36 REMARK 500 6 ASP A 2 66.85 -154.22 REMARK 500 6 ASN A 6 -4.71 -167.74 REMARK 500 6 ILE A 10 67.86 81.27 REMARK 500 6 HIS A 18 -108.12 -126.97 REMARK 500 6 ALA A 19 84.11 69.20 REMARK 500 7 ASP A 2 75.17 -161.92 REMARK 500 7 ASN A 6 44.33 37.01 REMARK 500 7 LYS A 7 0.60 -67.46 REMARK 500 7 SER A 8 -88.00 -72.59 REMARK 500 7 PHE A 9 -56.68 26.34 REMARK 500 7 ILE A 10 89.58 138.13 REMARK 500 7 HIS A 18 66.85 60.53 REMARK 500 7 ALA A 19 -110.77 -151.63 REMARK 500 8 TYR A 5 44.47 -87.00 REMARK 500 8 ASN A 6 55.51 35.71 REMARK 500 8 PHE A 9 13.06 89.99 REMARK 500 8 ILE A 10 77.97 59.56 REMARK 500 8 ALA A 19 90.95 59.45 REMARK 500 9 ASP A 2 69.95 -160.73 REMARK 500 9 ASN A 6 -35.94 -143.84 REMARK 500 9 ILE A 10 60.23 65.07 REMARK 500 9 HIS A 18 100.83 64.37 REMARK 500 9 ALA A 19 104.68 72.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30265 RELATED DB: BMRB REMARK 900 PEPTIDE 38148 MODIFIED FROM FRAGMENT 41-60 OF PLASMODIUM FALCIPARUM REMARK 900 THROMBOSPONDIN-RELATED SPOROZOITE PROTEIN (TRSP) REMARK 900 RELATED ID: 5UY2 RELATED DB: PDB DBREF 5V2B A 1 20 UNP Q8I2A0 Q8I2A0_PLAF7 41 60 SEQADV 5V2B THR A 3 UNP Q8I2A0 VAL 43 ENGINEERED MUTATION SEQADV 5V2B LYS A 13 UNP Q8I2A0 ARG 53 ENGINEERED MUTATION SEQADV 5V2B HIS A 14 UNP Q8I2A0 LEU 54 ENGINEERED MUTATION SEQRES 1 A 20 SER ASP THR ARG TYR ASN LYS SER PHE ILE ASN ASN LYS SEQRES 2 A 20 HIS LEU ASN GLU HIS ALA HIS HELIX 1 AA1 ASN A 6 ALA A 19 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1