HEADER HYDROLASE 04-MAR-17 5V2I TITLE CRYSTAL STRUCTURE OF A MUTANT GLYCOSYLASPARAGINASE (G172D) THAT CAUSES TITLE 2 THE GENETIC DISEASE ASPARTYLGLUCOSAMINURIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLASPARAGINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA; SOURCE 3 ORGANISM_TAXID: 238; SOURCE 4 GENE: BES09_04975; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-AHA, CATALYTIC MECHANISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANDE,H.GUO REVDAT 5 04-OCT-23 5V2I 1 REMARK REVDAT 4 25-DEC-19 5V2I 1 REMARK REVDAT 3 20-SEP-17 5V2I 1 REMARK REVDAT 2 28-JUN-17 5V2I 1 JRNL REVDAT 1 17-MAY-17 5V2I 0 JRNL AUTH S.PANDE,D.LAKSHMINARASIMHAN,H.C.GUO JRNL TITL CRYSTAL STRUCTURE OF A MUTANT GLYCOSYLASPARAGINASE SHEDDING JRNL TITL 2 LIGHT ON ASPARTYLGLYCOSAMINURIA-CAUSING MECHANISM AS WELL AS JRNL TITL 3 ON HYDROLYSIS OF NON-CHITOBIOSE SUBSTRATE. JRNL REF MOL. GENET. METAB. V. 121 150 2017 JRNL REFN ESSN 1096-7206 JRNL PMID 28457719 JRNL DOI 10.1016/J.YMGME.2017.04.008 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 42925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : -0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4245 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4126 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5719 ; 1.915 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9481 ; 1.073 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 545 ; 6.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;34.196 ;24.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 751 ;13.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4859 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 942 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2195 ; 1.658 ; 1.509 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2194 ; 1.651 ; 1.508 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2735 ; 2.487 ; 2.245 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2736 ; 2.489 ; 2.246 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 2.672 ; 1.938 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2050 ; 2.669 ; 1.938 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2984 ; 4.103 ; 2.753 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5004 ; 5.651 ;13.535 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4879 ; 5.507 ;13.265 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5V2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1P4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25% POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 465 SER A 139 REMARK 465 GLN A 140 REMARK 465 TYR A 141 REMARK 465 LYS A 142 REMARK 465 PRO A 143 REMARK 465 ILE A 144 REMARK 465 VAL A 145 REMARK 465 ASN A 146 REMARK 465 ILE A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 HIS A 150 REMARK 465 ASP A 151 REMARK 465 ASP B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 GLU B 48 REMARK 465 ARG B 49 REMARK 465 SER B 50 REMARK 465 VAL B 51 REMARK 465 GLY B 52 REMARK 465 TYR B 53 REMARK 465 GLY B 54 REMARK 465 LYS B 137 REMARK 465 THR B 138 REMARK 465 SER B 139 REMARK 465 GLN B 140 REMARK 465 TYR B 141 REMARK 465 LYS B 142 REMARK 465 PRO B 143 REMARK 465 ILE B 144 REMARK 465 VAL B 145 REMARK 465 ASN B 146 REMARK 465 ILE B 147 REMARK 465 GLU B 148 REMARK 465 ASN B 149 REMARK 465 HIS B 150 REMARK 465 ASP B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 136 CG CD1 CD2 REMARK 470 LEU B 136 CG CD1 CD2 REMARK 470 SER B 171 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 1 CB OG1 CG2 REMARK 480 THR B 1 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 229 O HOH A 301 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 1 CA THR B 1 CB -0.202 REMARK 500 ARG B 245 CZ ARG B 245 NH1 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 45 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 66 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 245 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 245 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 11 171.50 82.06 REMARK 500 GLU A 134 -71.63 -58.10 REMARK 500 TRP A 135 -34.41 -36.99 REMARK 500 TYR A 175 19.68 59.70 REMARK 500 LYS A 176 158.50 -49.84 REMARK 500 ALA A 189 -81.29 -97.27 REMARK 500 ILE A 197 -61.04 -129.61 REMARK 500 ASP A 273 152.72 -49.32 REMARK 500 TRP B 11 171.07 73.45 REMARK 500 HIS B 84 -2.79 73.83 REMARK 500 ASN B 87 77.46 -119.10 REMARK 500 ALA B 189 -84.93 -99.38 REMARK 500 ILE B 197 -58.00 -126.03 REMARK 500 ASP B 281 -159.61 -135.90 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5V2I A 1 295 UNP A0A1E3DWI1_ELIME DBREF2 5V2I A A0A1E3DWI1 37 331 DBREF1 5V2I B 1 295 UNP A0A1E3DWI1_ELIME DBREF2 5V2I B A0A1E3DWI1 37 331 SEQADV 5V2I THR A 2 UNP A0A1E3DWI VAL 38 CONFLICT SEQADV 5V2I HIS A 16 UNP A0A1E3DWI GLN 52 CONFLICT SEQADV 5V2I ALA A 126 UNP A0A1E3DWI PRO 162 CONFLICT SEQADV 5V2I ASP A 172 UNP A0A1E3DWI GLY 208 ENGINEERED MUTATION SEQADV 5V2I ASN A 244 UNP A0A1E3DWI LYS 280 CONFLICT SEQADV 5V2I THR A 289 UNP A0A1E3DWI LYS 325 CONFLICT SEQADV 5V2I GLY A 291 UNP A0A1E3DWI GLU 327 CONFLICT SEQADV 5V2I THR B 2 UNP A0A1E3DWI VAL 38 CONFLICT SEQADV 5V2I HIS B 16 UNP A0A1E3DWI GLN 52 CONFLICT SEQADV 5V2I ALA B 126 UNP A0A1E3DWI PRO 162 CONFLICT SEQADV 5V2I ASP B 172 UNP A0A1E3DWI GLY 208 ENGINEERED MUTATION SEQADV 5V2I ASN B 244 UNP A0A1E3DWI LYS 280 CONFLICT SEQADV 5V2I THR B 289 UNP A0A1E3DWI LYS 325 CONFLICT SEQADV 5V2I GLY B 291 UNP A0A1E3DWI GLU 327 CONFLICT SEQRES 1 A 295 THR THR ASN LYS PRO ILE VAL LEU SER THR TRP ASN PHE SEQRES 2 A 295 GLY LEU HIS ALA ASN VAL GLU ALA TRP LYS VAL LEU SER SEQRES 3 A 295 LYS GLY GLY LYS ALA LEU ASP ALA VAL GLU LYS GLY VAL SEQRES 4 A 295 ARG LEU VAL GLU ASP ASP PRO THR GLU ARG SER VAL GLY SEQRES 5 A 295 TYR GLY GLY ARG PRO ASP ARG ASP GLY ARG VAL THR LEU SEQRES 6 A 295 ASP ALA CYS ILE MET ASP GLU ASN TYR ASN ILE GLY SER SEQRES 7 A 295 VAL ALA CYS MET GLU HIS ILE LYS ASN PRO ILE SER VAL SEQRES 8 A 295 ALA ARG ALA VAL MET GLU LYS THR PRO HIS VAL MET LEU SEQRES 9 A 295 VAL GLY ASP GLY ALA LEU GLU PHE ALA LEU SER GLN GLY SEQRES 10 A 295 PHE LYS LYS GLU ASN LEU LEU THR ALA GLU SER GLU LYS SEQRES 11 A 295 GLU TRP LYS GLU TRP LEU LYS THR SER GLN TYR LYS PRO SEQRES 12 A 295 ILE VAL ASN ILE GLU ASN HIS ASP THR ILE GLY MET ILE SEQRES 13 A 295 ALA LEU ASP ALA GLN GLY ASN LEU SER GLY ALA CYS THR SEQRES 14 A 295 THR SER ASP MET ALA TYR LYS MET HIS GLY ARG VAL GLY SEQRES 15 A 295 ASP SER PRO ILE ILE GLY ALA GLY LEU PHE VAL ASP ASN SEQRES 16 A 295 GLU ILE GLY ALA ALA THR ALA THR GLY HIS GLY GLU GLU SEQRES 17 A 295 VAL ILE ARG THR VAL GLY THR HIS LEU VAL VAL GLU LEU SEQRES 18 A 295 MET ASN GLN GLY ARG THR PRO GLN GLN ALA CYS LYS GLU SEQRES 19 A 295 ALA VAL GLU ARG ILE VAL LYS ILE VAL ASN ARG ARG GLY SEQRES 20 A 295 LYS ASN LEU LYS ASP ILE GLN VAL GLY PHE ILE ALA LEU SEQRES 21 A 295 ASN LYS LYS GLY GLU TYR GLY ALA TYR CYS ILE GLN ASP SEQRES 22 A 295 GLY PHE ASN PHE ALA VAL HIS ASP GLN LYS GLY ASN ARG SEQRES 23 A 295 LEU GLU THR PRO GLY PHE ALA LEU LYS SEQRES 1 B 295 THR THR ASN LYS PRO ILE VAL LEU SER THR TRP ASN PHE SEQRES 2 B 295 GLY LEU HIS ALA ASN VAL GLU ALA TRP LYS VAL LEU SER SEQRES 3 B 295 LYS GLY GLY LYS ALA LEU ASP ALA VAL GLU LYS GLY VAL SEQRES 4 B 295 ARG LEU VAL GLU ASP ASP PRO THR GLU ARG SER VAL GLY SEQRES 5 B 295 TYR GLY GLY ARG PRO ASP ARG ASP GLY ARG VAL THR LEU SEQRES 6 B 295 ASP ALA CYS ILE MET ASP GLU ASN TYR ASN ILE GLY SER SEQRES 7 B 295 VAL ALA CYS MET GLU HIS ILE LYS ASN PRO ILE SER VAL SEQRES 8 B 295 ALA ARG ALA VAL MET GLU LYS THR PRO HIS VAL MET LEU SEQRES 9 B 295 VAL GLY ASP GLY ALA LEU GLU PHE ALA LEU SER GLN GLY SEQRES 10 B 295 PHE LYS LYS GLU ASN LEU LEU THR ALA GLU SER GLU LYS SEQRES 11 B 295 GLU TRP LYS GLU TRP LEU LYS THR SER GLN TYR LYS PRO SEQRES 12 B 295 ILE VAL ASN ILE GLU ASN HIS ASP THR ILE GLY MET ILE SEQRES 13 B 295 ALA LEU ASP ALA GLN GLY ASN LEU SER GLY ALA CYS THR SEQRES 14 B 295 THR SER ASP MET ALA TYR LYS MET HIS GLY ARG VAL GLY SEQRES 15 B 295 ASP SER PRO ILE ILE GLY ALA GLY LEU PHE VAL ASP ASN SEQRES 16 B 295 GLU ILE GLY ALA ALA THR ALA THR GLY HIS GLY GLU GLU SEQRES 17 B 295 VAL ILE ARG THR VAL GLY THR HIS LEU VAL VAL GLU LEU SEQRES 18 B 295 MET ASN GLN GLY ARG THR PRO GLN GLN ALA CYS LYS GLU SEQRES 19 B 295 ALA VAL GLU ARG ILE VAL LYS ILE VAL ASN ARG ARG GLY SEQRES 20 B 295 LYS ASN LEU LYS ASP ILE GLN VAL GLY PHE ILE ALA LEU SEQRES 21 B 295 ASN LYS LYS GLY GLU TYR GLY ALA TYR CYS ILE GLN ASP SEQRES 22 B 295 GLY PHE ASN PHE ALA VAL HIS ASP GLN LYS GLY ASN ARG SEQRES 23 B 295 LEU GLU THR PRO GLY PHE ALA LEU LYS FORMUL 3 HOH *332(H2 O) HELIX 1 AA1 PHE A 13 SER A 26 1 14 HELIX 2 AA2 LYS A 30 ASP A 45 1 16 HELIX 3 AA3 ASN A 87 THR A 99 1 13 HELIX 4 AA4 GLY A 106 GLN A 116 1 11 HELIX 5 AA5 THR A 125 LEU A 136 1 12 HELIX 6 AA6 HIS A 205 VAL A 213 1 9 HELIX 7 AA7 VAL A 213 GLN A 224 1 12 HELIX 8 AA8 THR A 227 ARG A 246 1 20 HELIX 9 AA9 ASN A 249 ILE A 253 5 5 HELIX 10 AB1 ASN B 12 SER B 26 1 15 HELIX 11 AB2 LYS B 30 ASP B 44 1 15 HELIX 12 AB3 ASN B 87 THR B 99 1 13 HELIX 13 AB4 GLY B 106 GLN B 116 1 11 HELIX 14 AB5 THR B 125 LEU B 136 1 12 HELIX 15 AB6 HIS B 205 VAL B 213 1 9 HELIX 16 AB7 VAL B 213 GLN B 224 1 12 HELIX 17 AB8 THR B 227 ARG B 246 1 20 HELIX 18 AB9 ASN B 249 ILE B 253 5 5 SHEET 1 AA1 8 MET A 103 VAL A 105 0 SHEET 2 AA1 8 ILE A 76 MET A 82 1 N SER A 78 O LEU A 104 SHEET 3 AA1 8 LEU A 65 MET A 70 -1 N ALA A 67 O VAL A 79 SHEET 4 AA1 8 LEU A 164 THR A 170 -1 O THR A 170 N ASP A 66 SHEET 5 AA1 8 ILE A 153 LEU A 158 -1 N MET A 155 O ALA A 167 SHEET 6 AA1 8 ILE A 6 THR A 10 -1 N LEU A 8 O ILE A 156 SHEET 7 AA1 8 PHE A 277 ASP A 281 -1 O HIS A 280 N VAL A 7 SHEET 8 AA1 8 GLY A 284 GLU A 288 -1 O GLU A 288 N PHE A 277 SHEET 1 AA2 5 LEU A 191 ASP A 194 0 SHEET 2 AA2 5 GLY A 198 GLY A 204 -1 O GLY A 198 N ASP A 194 SHEET 3 AA2 5 VAL A 255 ASN A 261 -1 O LEU A 260 N ALA A 199 SHEET 4 AA2 5 TYR A 266 CYS A 270 -1 O TYR A 269 N PHE A 257 SHEET 5 AA2 5 GLY A 291 PHE A 292 1 O GLY A 291 N CYS A 270 SHEET 1 AA3 8 MET B 103 VAL B 105 0 SHEET 2 AA3 8 ILE B 76 GLU B 83 1 N SER B 78 O LEU B 104 SHEET 3 AA3 8 THR B 64 MET B 70 -1 N ALA B 67 O VAL B 79 SHEET 4 AA3 8 LEU B 164 THR B 170 -1 O GLY B 166 N MET B 70 SHEET 5 AA3 8 ILE B 153 LEU B 158 -1 N MET B 155 O ALA B 167 SHEET 6 AA3 8 ILE B 6 THR B 10 -1 N ILE B 6 O LEU B 158 SHEET 7 AA3 8 PHE B 277 ASP B 281 -1 O ALA B 278 N SER B 9 SHEET 8 AA3 8 GLY B 284 GLU B 288 -1 O GLU B 288 N PHE B 277 SHEET 1 AA4 5 LEU B 191 ASP B 194 0 SHEET 2 AA4 5 GLY B 198 GLY B 204 -1 O GLY B 198 N ASP B 194 SHEET 3 AA4 5 VAL B 255 ASN B 261 -1 O LEU B 260 N ALA B 199 SHEET 4 AA4 5 TYR B 266 CYS B 270 -1 O TYR B 269 N PHE B 257 SHEET 5 AA4 5 GLY B 291 PHE B 292 1 O GLY B 291 N CYS B 270 CISPEP 1 LYS A 4 PRO A 5 0 -3.57 CISPEP 2 ASP A 172 MET A 173 0 -1.21 CISPEP 3 LYS B 4 PRO B 5 0 0.58 CRYST1 46.040 52.770 61.890 81.51 90.15 105.93 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021720 0.006199 -0.000901 0.00000 SCALE2 0.000000 0.019707 -0.003047 0.00000 SCALE3 0.000000 0.000000 0.016350 0.00000