HEADER OXIDOREDUCTASE 06-MAR-17 5V2X TITLE ETHYLENE FORMING ENZYME IN COMPLEX WITH MANGANESE AND 2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA-KETOGLUTARIC ACID, 2-KETOGLUTARIC ACID, 2-OXOGLUTARIC ACID, KEYWDS 2 OXOGLUTARIC ACID, ETHYLENE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,S.MARTINEZ,J.HU,R.P.HAUSINGER REVDAT 5 04-OCT-23 5V2X 1 LINK REVDAT 4 01-JAN-20 5V2X 1 REMARK REVDAT 3 27-SEP-17 5V2X 1 REMARK REVDAT 2 13-SEP-17 5V2X 1 JRNL REVDAT 1 16-AUG-17 5V2X 0 JRNL AUTH S.MARTINEZ,M.FELLNER,C.Q.HERR,A.RITCHIE,J.HU,R.P.HAUSINGER JRNL TITL STRUCTURES AND MECHANISMS OF THE NON-HEME FE(II)- AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT ETHYLENE-FORMING ENZYME: SUBSTRATE JRNL TITL 3 BINDING CREATES A TWIST. JRNL REF J. AM. CHEM. SOC. V. 139 11980 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28780854 JRNL DOI 10.1021/JACS.7B06186 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 3316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0447 - 5.7360 0.99 3869 205 0.1774 0.2175 REMARK 3 2 5.7360 - 4.5544 1.00 3910 180 0.1402 0.1674 REMARK 3 3 4.5544 - 3.9791 1.00 3924 210 0.1142 0.1451 REMARK 3 4 3.9791 - 3.6155 1.00 3852 231 0.1254 0.1581 REMARK 3 5 3.6155 - 3.3564 1.00 3895 233 0.1310 0.1589 REMARK 3 6 3.3564 - 3.1586 1.00 3838 268 0.1457 0.1818 REMARK 3 7 3.1586 - 3.0005 1.00 3955 186 0.1519 0.2027 REMARK 3 8 3.0005 - 2.8699 1.00 3851 203 0.1539 0.2020 REMARK 3 9 2.8699 - 2.7594 1.00 3957 190 0.1454 0.1997 REMARK 3 10 2.7594 - 2.6642 1.00 3860 232 0.1488 0.1899 REMARK 3 11 2.6642 - 2.5809 1.00 3896 199 0.1522 0.2289 REMARK 3 12 2.5809 - 2.5071 1.00 3898 216 0.1476 0.1840 REMARK 3 13 2.5071 - 2.4411 1.00 3893 233 0.1520 0.2031 REMARK 3 14 2.4411 - 2.3816 1.00 3929 176 0.1510 0.2186 REMARK 3 15 2.3816 - 2.3274 1.00 3894 219 0.1579 0.1988 REMARK 3 16 2.3274 - 2.2779 1.00 3836 236 0.1653 0.2146 REMARK 3 17 2.2779 - 2.2324 1.00 3894 250 0.1710 0.2049 REMARK 3 18 2.2324 - 2.1902 1.00 3850 232 0.1671 0.1805 REMARK 3 19 2.1902 - 2.1511 1.00 3864 239 0.1814 0.2315 REMARK 3 20 2.1511 - 2.1147 1.00 3880 219 0.1761 0.2196 REMARK 3 21 2.1147 - 2.0805 1.00 3874 219 0.1839 0.2395 REMARK 3 22 2.0805 - 2.0485 1.00 3962 178 0.1928 0.2375 REMARK 3 23 2.0485 - 2.0184 1.00 3901 217 0.2038 0.2295 REMARK 3 24 2.0184 - 1.9900 1.00 3855 251 0.2120 0.2479 REMARK 3 25 1.9900 - 1.9631 1.00 3912 211 0.2149 0.2403 REMARK 3 26 1.9631 - 1.9376 1.00 3901 188 0.2259 0.2856 REMARK 3 27 1.9376 - 1.9134 1.00 3903 190 0.2330 0.2269 REMARK 3 28 1.9134 - 1.8903 1.00 3928 189 0.2396 0.3011 REMARK 3 29 1.8903 - 1.8683 1.00 3939 204 0.2346 0.2906 REMARK 3 30 1.8683 - 1.8473 0.91 3571 160 0.2587 0.2635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5717 REMARK 3 ANGLE : 0.750 7754 REMARK 3 CHIRALITY : 0.049 821 REMARK 3 PLANARITY : 0.006 1022 REMARK 3 DIHEDRAL : 3.048 4702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64351 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.847 REMARK 200 RESOLUTION RANGE LOW (A) : 45.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5V2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 UL 61 MG/ML EFE (25 MM HEPES PH REMARK 280 8.0, 1 MM TCEP, 0.6 MM 2-OXOGLUTARATE) WAS MIXED WITH 0.18 UL REMARK 280 RESERVOIR SOLUTION. THE SITTING DROP RESERVOIR OF 50 UL REMARK 280 CONTAINED 0.2 M LITHIUM CHLORIDE, 0.1 M TRIS-HCL PH 8.0, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 6,000. THE CRYSTAL WAS SOAKED FOR ABOUT A REMARK 280 MINUTE IN 25% GLYCEROL, 75% RESERVOIR SOLUTION BEFORE FREEZING REMARK 280 IT., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.20550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.19250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.77300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.19250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.20550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.77300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 ARG A 346 REMARK 465 ALA A 347 REMARK 465 THR A 348 REMARK 465 GLY A 349 REMARK 465 SER A 350 REMARK 465 ASP B 344 REMARK 465 THR B 345 REMARK 465 ARG B 346 REMARK 465 ALA B 347 REMARK 465 THR B 348 REMARK 465 GLY B 349 REMARK 465 SER B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 SER A 299 OG REMARK 470 ARG A 316 CD NE CZ NH1 NH2 REMARK 470 GLU B 297 CD OE1 OE2 REMARK 470 ARG B 316 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 855 O HOH B 906 2.00 REMARK 500 O HOH A 931 O HOH A 949 2.06 REMARK 500 O HOH B 855 O HOH B 953 2.10 REMARK 500 O HOH A 812 O HOH B 807 2.11 REMARK 500 O HOH A 816 O HOH A 846 2.11 REMARK 500 O HOH A 900 O HOH A 923 2.12 REMARK 500 O HOH A 519 O HOH A 543 2.13 REMARK 500 O HOH A 879 O HOH A 923 2.14 REMARK 500 O HOH A 834 O HOH A 837 2.14 REMARK 500 O HOH A 859 O HOH A 876 2.14 REMARK 500 O HOH A 810 O HOH A 881 2.15 REMARK 500 O HOH A 791 O HOH A 817 2.15 REMARK 500 O HOH A 787 O HOH A 827 2.15 REMARK 500 O HOH B 823 O HOH B 971 2.16 REMARK 500 O HOH B 803 O HOH B 887 2.16 REMARK 500 O HOH B 734 O HOH B 951 2.16 REMARK 500 O HOH B 515 O HOH B 822 2.16 REMARK 500 O HOH A 927 O HOH A 936 2.17 REMARK 500 O HOH B 823 O HOH B 895 2.17 REMARK 500 O HOH A 698 O HOH A 843 2.17 REMARK 500 O HOH A 951 O HOH A 1000 2.17 REMARK 500 O HOH A 788 O HOH A 919 2.18 REMARK 500 O HOH B 897 O HOH B 934 2.18 REMARK 500 O HOH A 868 O HOH A 898 2.19 REMARK 500 O4 AKG B 403 O HOH B 501 2.19 REMARK 500 O HOH A 617 O HOH A 940 2.19 REMARK 500 O HOH B 886 O HOH B 899 2.19 REMARK 500 O HOH A 840 O HOH A 865 2.19 REMARK 500 O HOH A 628 O HOH A 948 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 922 O HOH B 936 2454 2.16 REMARK 500 O HOH B 503 O HOH B 884 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -72.24 -137.42 REMARK 500 ASP A 201 -166.88 -78.53 REMARK 500 MET B 1 -55.56 -140.56 REMARK 500 ASP B 201 -165.64 -77.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 998 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 999 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1000 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1001 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1002 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 982 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 983 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 984 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 985 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 986 DISTANCE = 6.74 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD1 101.4 REMARK 620 3 HIS A 268 NE2 84.7 94.5 REMARK 620 4 AKG A 402 O2 89.0 166.7 94.6 REMARK 620 5 AKG A 403 O4 87.8 168.2 93.7 1.5 REMARK 620 6 HOH A 508 O 171.0 86.8 91.2 83.3 84.5 REMARK 620 7 HOH A 531 O 95.1 90.9 174.5 79.9 80.8 88.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 189 NE2 REMARK 620 2 ASP B 191 OD1 101.0 REMARK 620 3 HIS B 268 NE2 85.3 94.5 REMARK 620 4 AKG B 402 O4 84.1 174.8 87.0 REMARK 620 5 AKG B 403 O2 81.4 172.8 92.4 6.3 REMARK 620 6 HOH B 519 O 95.3 91.6 173.7 86.8 81.4 REMARK 620 7 HOH B 521 O 172.9 85.7 91.9 89.2 92.2 86.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V2T RELATED DB: PDB REMARK 900 RELATED ID: 5V2U RELATED DB: PDB REMARK 900 RELATED ID: 5V2V RELATED DB: PDB REMARK 900 RELATED ID: 5V2Y RELATED DB: PDB REMARK 900 RELATED ID: 5V2Z RELATED DB: PDB REMARK 900 RELATED ID: 5V31 RELATED DB: PDB REMARK 900 RELATED ID: 5V32 RELATED DB: PDB REMARK 900 RELATED ID: 5V34 RELATED DB: PDB DBREF 5V2X A 1 350 UNP P32021 EFE_PSESH 1 350 DBREF 5V2X B 1 350 UNP P32021 EFE_PSESH 1 350 SEQADV 5V2X SER A -1 UNP P32021 EXPRESSION TAG SEQADV 5V2X HIS A 0 UNP P32021 EXPRESSION TAG SEQADV 5V2X SER B -1 UNP P32021 EXPRESSION TAG SEQADV 5V2X HIS B 0 UNP P32021 EXPRESSION TAG SEQRES 1 A 352 SER HIS MET THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 A 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 A 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 A 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 A 352 ALA MET ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 A 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 A 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 A 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 A 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 A 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 A 352 SER MET LYS THR PHE MET GLU GLU LEU GLY LEU ALA GLY SEQRES 12 A 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 A 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 A 352 HIS HIS MET ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 A 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 A 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 A 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 A 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MET PHE GLU SEQRES 19 A 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 A 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MET SEQRES 21 A 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 A 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 A 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 A 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 A 352 THR ASN MET PHE MET ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 A 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 A 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 A 352 SER SEQRES 1 B 352 SER HIS MET THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 B 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 B 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 B 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 B 352 ALA MET ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 B 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 B 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 B 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 B 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 B 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 B 352 SER MET LYS THR PHE MET GLU GLU LEU GLY LEU ALA GLY SEQRES 12 B 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 B 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 B 352 HIS HIS MET ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 B 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 B 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 B 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 B 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MET PHE GLU SEQRES 19 B 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 B 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MET SEQRES 21 B 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 B 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 B 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 B 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 B 352 THR ASN MET PHE MET ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 B 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 B 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 B 352 SER HET MN A 401 1 HET AKG A 402 10 HET AKG A 403 10 HET MN B 401 1 HET AKG B 402 10 HET AKG B 403 10 HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 MN 2(MN 2+) FORMUL 4 AKG 4(C5 H6 O5) FORMUL 9 HOH *988(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 SER A 68 1 7 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 GLY A 252 THR A 259 1 8 HELIX 7 AA7 TYR A 306 TYR A 318 1 13 HELIX 8 AA8 ARG A 321 ASN A 331 1 11 HELIX 9 AA9 LEU A 333 SER A 343 1 11 HELIX 10 AB1 CYS B 16 GLY B 34 1 19 HELIX 11 AB2 ASP B 41 LYS B 60 1 20 HELIX 12 AB3 PRO B 62 SER B 68 1 7 HELIX 13 AB4 ASP B 106 ALA B 111 1 6 HELIX 14 AB5 ASN B 123 PHE B 152 1 30 HELIX 15 AB6 GLY B 252 THR B 259 1 8 HELIX 16 AB7 TYR B 306 TYR B 318 1 13 HELIX 17 AB8 ARG B 321 ASN B 331 1 11 HELIX 18 AB9 LEU B 333 SER B 343 1 11 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O LYS A 39 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N VAL A 196 O PHE A 250 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N HIS A 169 O PHE A 283 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N PHE A 96 O VAL A 172 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N VAL A 79 O ILE A 95 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O HIS A 268 N HIS A 189 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 SHEET 1 AA5 8 THR B 6 PHE B 7 0 SHEET 2 AA5 8 PHE B 36 LYS B 39 1 O LYS B 39 N PHE B 7 SHEET 3 AA5 8 VAL B 246 PRO B 251 -1 O TRP B 247 N ILE B 38 SHEET 4 AA5 8 LEU B 195 GLN B 200 -1 N ALA B 198 O THR B 248 SHEET 5 AA5 8 ARG B 277 HIS B 284 -1 O TYR B 282 N ILE B 197 SHEET 6 AA5 8 HIS B 169 PHE B 175 -1 N HIS B 169 O PHE B 283 SHEET 7 AA5 8 GLU B 94 VAL B 98 -1 N VAL B 98 O MET B 170 SHEET 8 AA5 8 GLY B 77 VAL B 79 -1 N VAL B 79 O ILE B 95 SHEET 1 AA6 2 VAL B 85 THR B 86 0 SHEET 2 AA6 2 LYS B 89 PRO B 90 -1 O LYS B 89 N THR B 86 SHEET 1 AA7 4 ARG B 184 HIS B 189 0 SHEET 2 AA7 4 HIS B 268 LYS B 271 -1 O HIS B 268 N HIS B 189 SHEET 3 AA7 4 LEU B 206 ILE B 208 -1 N TYR B 207 O LYS B 269 SHEET 4 AA7 4 THR B 238 PHE B 239 -1 O THR B 238 N ILE B 208 SHEET 1 AA8 2 SER B 291 ALA B 292 0 SHEET 2 AA8 2 ILE B 304 HIS B 305 -1 O ILE B 304 N ALA B 292 LINK NE2 HIS A 189 MN MN A 401 1555 1555 2.24 LINK OD1 ASP A 191 MN MN A 401 1555 1555 2.19 LINK NE2 HIS A 268 MN MN A 401 1555 1555 2.19 LINK MN MN A 401 O2 AAKG A 402 1555 1555 2.05 LINK MN MN A 401 O4 BAKG A 403 1555 1555 2.38 LINK MN MN A 401 O HOH A 508 1555 1555 2.32 LINK MN MN A 401 O HOH A 531 1555 1555 2.26 LINK NE2 HIS B 189 MN MN B 401 1555 1555 2.27 LINK OD1 ASP B 191 MN MN B 401 1555 1555 2.13 LINK NE2 HIS B 268 MN MN B 401 1555 1555 2.19 LINK MN MN B 401 O4 AAKG B 402 1555 1555 2.30 LINK MN MN B 401 O2 BAKG B 403 1555 1555 2.13 LINK MN MN B 401 O HOH B 519 1555 1555 2.21 LINK MN MN B 401 O HOH B 521 1555 1555 2.26 CISPEP 1 GLU A 235 PRO A 236 0 -0.10 CISPEP 2 GLU B 235 PRO B 236 0 -0.23 SITE 1 AC1 7 HIS A 189 ASP A 191 HIS A 268 AKG A 402 SITE 2 AC1 7 AKG A 403 HOH A 508 HOH A 531 SITE 1 AC2 14 ARG A 171 PHE A 175 ILE A 186 HIS A 189 SITE 2 AC2 14 LEU A 206 HIS A 268 VAL A 270 ARG A 277 SITE 3 AC2 14 ALA A 279 MN A 401 AKG A 403 HOH A 508 SITE 4 AC2 14 HOH A 526 HOH A 531 SITE 1 AC3 13 ARG A 171 LEU A 173 PHE A 175 HIS A 189 SITE 2 AC3 13 HIS A 268 VAL A 270 ARG A 277 ALA A 279 SITE 3 AC3 13 MN A 401 AKG A 402 HOH A 526 HOH A 531 SITE 4 AC3 13 HOH A 540 SITE 1 AC4 7 HIS B 189 ASP B 191 HIS B 268 AKG B 402 SITE 2 AC4 7 AKG B 403 HOH B 519 HOH B 521 SITE 1 AC5 12 ARG B 171 LEU B 173 PHE B 175 ILE B 186 SITE 2 AC5 12 HIS B 189 LEU B 206 HIS B 268 VAL B 270 SITE 3 AC5 12 ARG B 277 MN B 401 AKG B 403 HOH B 519 SITE 1 AC6 13 ARG B 171 PHE B 175 ILE B 186 HIS B 189 SITE 2 AC6 13 HIS B 268 VAL B 270 ARG B 277 ALA B 279 SITE 3 AC6 13 MN B 401 AKG B 402 HOH B 501 HOH B 519 SITE 4 AC6 13 HOH B 521 CRYST1 74.411 97.546 102.385 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009767 0.00000