HEADER TRANSFERASE 07-MAR-17 5V3D TITLE CRYSTAL STRUCTURE OF FOSFOMYCIN RESISTANCE PROTEIN FROM KLEBSIELLA TITLE 2 PNEUMONIAE WITH BOUND FOSFOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOSFOMYCIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOSA, FOSAKP, FOSFOMYCIN, GLUTATHIONE TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KLONTZ,S.GUENTHER,Z.SILVERSTEIN,E.SUNDBERG REVDAT 4 04-OCT-23 5V3D 1 LINK REVDAT 3 08-NOV-17 5V3D 1 JRNL REVDAT 2 20-SEP-17 5V3D 1 JRNL REVDAT 1 30-AUG-17 5V3D 0 JRNL AUTH E.H.KLONTZ,A.D.TOMICH,S.GUNTHER,J.A.LEMKUL,D.DEREDGE, JRNL AUTH 2 Z.SILVERSTEIN,J.F.SHAW,C.MCELHENY,Y.DOI,P.L.WINTRODE, JRNL AUTH 3 A.D.MACKERELL,N.SLUIS-CREMER,E.J.SUNDBERG JRNL TITL STRUCTURE AND DYNAMICS OF FOSA-MEDIATED FOSFOMYCIN JRNL TITL 2 RESISTANCE IN KLEBSIELLA PNEUMONIAE AND ESCHERICHIA COLI. JRNL REF ANTIMICROB. AGENTS V. 61 2017 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 28874374 JRNL DOI 10.1128/AAC.01572-17 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 41577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2978 - 4.6103 0.87 2500 125 0.1545 0.1831 REMARK 3 2 4.6103 - 3.6616 0.89 2515 135 0.1322 0.1622 REMARK 3 3 3.6616 - 3.1994 0.89 2553 135 0.1502 0.1875 REMARK 3 4 3.1994 - 2.9071 0.90 2578 130 0.1523 0.1699 REMARK 3 5 2.9071 - 2.6989 0.91 2579 132 0.1656 0.1999 REMARK 3 6 2.6989 - 2.5399 0.92 2660 133 0.1663 0.2265 REMARK 3 7 2.5399 - 2.4127 0.92 2619 135 0.1717 0.2230 REMARK 3 8 2.4127 - 2.3078 0.91 2619 142 0.1716 0.2104 REMARK 3 9 2.3078 - 2.2190 0.93 2623 136 0.1649 0.1645 REMARK 3 10 2.2190 - 2.1424 0.94 2708 135 0.1614 0.1992 REMARK 3 11 2.1424 - 2.0754 0.93 2649 147 0.1658 0.2135 REMARK 3 12 2.0754 - 2.0161 0.94 2671 147 0.1767 0.2228 REMARK 3 13 2.0161 - 1.9631 0.95 2726 141 0.1658 0.1871 REMARK 3 14 1.9631 - 1.9152 0.92 2649 147 0.1641 0.2287 REMARK 3 15 1.9152 - 1.8716 0.94 2671 139 0.1700 0.1850 REMARK 3 16 1.8716 - 1.8318 0.95 2700 146 0.1738 0.2538 REMARK 3 17 1.8318 - 1.7952 0.96 2741 138 0.1945 0.2385 REMARK 3 18 1.7952 - 1.7613 0.96 2739 146 0.1917 0.2536 REMARK 3 19 1.7613 - 1.7299 0.96 2763 139 0.2059 0.2547 REMARK 3 20 1.7299 - 1.7005 0.97 2801 137 0.2128 0.2730 REMARK 3 21 1.7005 - 1.6731 0.96 2695 149 0.2224 0.3313 REMARK 3 22 1.6731 - 1.6474 0.97 2842 141 0.2237 0.2885 REMARK 3 23 1.6474 - 1.6231 0.95 2679 143 0.2484 0.2591 REMARK 3 24 1.6231 - 1.6003 0.96 2718 145 0.2484 0.2631 REMARK 3 25 1.6003 - 1.5787 0.97 2787 154 0.2591 0.3269 REMARK 3 26 1.5787 - 1.5582 0.97 2790 143 0.2645 0.3381 REMARK 3 27 1.5582 - 1.5387 0.91 2590 155 0.2860 0.2833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2261 REMARK 3 ANGLE : 0.885 3073 REMARK 3 CHIRALITY : 0.051 328 REMARK 3 PLANARITY : 0.005 394 REMARK 3 DIHEDRAL : 13.506 1318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.539 REMARK 200 RESOLUTION RANGE LOW (A) : 29.293 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LQP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL OF FOSAKP SOLUTION: 9MG/ML FOSAKP REMARK 280 IN STORAGE SOLUTION (75MM NACL, 10MM TRIS, PH 7.5), 6MM MNCL2, REMARK 280 6MM FOSFOMYCIN. 1UL OF MOTHER LIQUOR: 0.22 M KBR, 20% PEG2000 REMARK 280 MME CRYSTALS APPEAR IN 2-3 DAYS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.03550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.75850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.57750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.75850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.03550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.57750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 GLU B 138 REMARK 465 GLN B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 FCN A 205 C4 PEG B 201 1.50 REMARK 500 O HOH A 385 O HOH A 409 1.95 REMARK 500 O HOH A 410 O HOH A 417 1.95 REMARK 500 O HOH A 360 O HOH A 370 2.00 REMARK 500 O HOH A 418 O HOH A 425 2.04 REMARK 500 O ALA B 124 OE1 GLU B 128 2.05 REMARK 500 N MET A 1 O HOH A 301 2.06 REMARK 500 O HOH B 301 O HOH B 416 2.11 REMARK 500 O HOH B 326 O HOH B 336 2.14 REMARK 500 C1 FCN A 205 O4 PEG B 201 2.15 REMARK 500 O HOH B 325 O HOH B 402 2.16 REMARK 500 O HOH A 365 O HOH A 374 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 449 O HOH A 451 4545 2.05 REMARK 500 O HOH A 348 O HOH B 380 3554 2.08 REMARK 500 O HOH A 314 O HOH A 371 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 74 CD GLU B 74 OE1 -0.085 REMARK 500 GLU B 74 CD GLU B 74 OE2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 452 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 7 NE2 REMARK 620 2 FCN A 205 O3P 125.9 REMARK 620 3 FCN A 205 O 94.1 74.0 REMARK 620 4 HIS B 67 NE2 114.6 116.5 85.0 REMARK 620 5 GLU B 113 OE1 91.5 102.6 174.4 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 NE2 REMARK 620 2 GLU A 113 OE1 93.1 REMARK 620 3 FCN A 203 O 86.8 179.4 REMARK 620 4 FCN A 203 O1P 113.8 103.3 76.2 REMARK 620 5 HIS B 7 NE2 115.9 94.5 86.1 125.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 95 OD1 REMARK 620 2 SER A 97 O 74.0 REMARK 620 3 SER A 97 OG 92.2 73.4 REMARK 620 4 GLU A 98 O 136.1 64.8 90.4 REMARK 620 5 GLY A 99 O 90.7 74.6 145.7 64.7 REMARK 620 6 SER A 101 OG 87.3 150.1 131.6 122.0 82.7 REMARK 620 7 HOH A 361 O 126.4 141.9 74.0 96.4 129.2 68.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 95 OD1 REMARK 620 2 SER B 97 O 73.4 REMARK 620 3 SER B 97 OG 90.7 72.6 REMARK 620 4 GLU B 98 O 137.7 67.3 92.0 REMARK 620 5 GLY B 99 O 91.8 79.4 149.9 66.7 REMARK 620 6 SER B 101 OG 84.0 147.7 131.4 123.3 78.7 REMARK 620 7 HOH B 352 O 126.6 142.2 75.2 94.8 125.3 70.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FCN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 DBREF 5V3D A 1 139 UNP W8UNW6 W8UNW6_KLEPN 1 139 DBREF 5V3D B 1 139 UNP W8UNW6 W8UNW6_KLEPN 1 139 SEQADV 5V3D HIS A 140 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS A 141 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS A 142 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS A 143 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS A 144 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS A 145 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 140 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 141 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 142 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 143 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 144 UNP W8UNW6 EXPRESSION TAG SEQADV 5V3D HIS B 145 UNP W8UNW6 EXPRESSION TAG SEQRES 1 A 145 MET LEU SER GLY LEU ASN HIS LEU THR LEU ALA VAL SER SEQRES 2 A 145 GLN LEU ALA PRO SER VAL ALA PHE TYR GLN GLN LEU LEU SEQRES 3 A 145 GLY MET THR LEU HIS ALA ARG TRP ASP SER GLY ALA TYR SEQRES 4 A 145 LEU SER CYS GLY ASP LEU TRP LEU CYS LEU SER LEU ASP SEQRES 5 A 145 PRO GLN ARG ARG VAL THR PRO PRO GLU GLU SER ASP TYR SEQRES 6 A 145 THR HIS TYR ALA PHE SER ILE SER GLU ALA ASP PHE ALA SEQRES 7 A 145 SER PHE ALA ALA ARG LEU GLU ALA ALA GLY VAL ALA VAL SEQRES 8 A 145 TRP LYS LEU ASN ARG SER GLU GLY ALA SER HIS TYR PHE SEQRES 9 A 145 LEU ASP PRO ASP GLY HIS LYS LEU GLU LEU HIS VAL GLY SEQRES 10 A 145 SER LEU ALA GLN ARG LEU ALA ALA CYS ARG GLU GLN PRO SEQRES 11 A 145 TYR LYS GLY MET VAL PHE PHE GLU GLN HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 MET LEU SER GLY LEU ASN HIS LEU THR LEU ALA VAL SER SEQRES 2 B 145 GLN LEU ALA PRO SER VAL ALA PHE TYR GLN GLN LEU LEU SEQRES 3 B 145 GLY MET THR LEU HIS ALA ARG TRP ASP SER GLY ALA TYR SEQRES 4 B 145 LEU SER CYS GLY ASP LEU TRP LEU CYS LEU SER LEU ASP SEQRES 5 B 145 PRO GLN ARG ARG VAL THR PRO PRO GLU GLU SER ASP TYR SEQRES 6 B 145 THR HIS TYR ALA PHE SER ILE SER GLU ALA ASP PHE ALA SEQRES 7 B 145 SER PHE ALA ALA ARG LEU GLU ALA ALA GLY VAL ALA VAL SEQRES 8 B 145 TRP LYS LEU ASN ARG SER GLU GLY ALA SER HIS TYR PHE SEQRES 9 B 145 LEU ASP PRO ASP GLY HIS LYS LEU GLU LEU HIS VAL GLY SEQRES 10 B 145 SER LEU ALA GLN ARG LEU ALA ALA CYS ARG GLU GLN PRO SEQRES 11 B 145 TYR LYS GLY MET VAL PHE PHE GLU GLN HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS HET MN A 201 1 HET K A 202 1 HET FCN A 203 8 HET MN A 204 1 HET FCN A 205 8 HET PEG B 201 7 HET K B 202 1 HET EDO B 203 4 HETNAM MN MANGANESE (II) ION HETNAM K POTASSIUM ION HETNAM FCN FOSFOMYCIN HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN FCN 1,2-EPOXYPROPYLPHOSPHONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 K 2(K 1+) FORMUL 5 FCN 2(C3 H7 O4 P) FORMUL 8 PEG C4 H10 O3 FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *277(H2 O) HELIX 1 AA1 GLN A 14 LEU A 25 1 12 HELIX 2 AA2 PRO A 59 SER A 63 5 5 HELIX 3 AA3 SER A 73 ALA A 87 1 15 HELIX 4 AA4 SER A 118 GLN A 129 1 12 HELIX 5 AA5 GLN B 14 LEU B 25 1 12 HELIX 6 AA6 PRO B 59 SER B 63 5 5 HELIX 7 AA7 SER B 73 ALA B 87 1 15 HELIX 8 AA8 SER B 118 GLN B 129 1 12 SHEET 1 AA1 9 VAL B 91 LYS B 93 0 SHEET 2 AA1 9 SER B 101 LEU B 105 -1 O TYR B 103 N TRP B 92 SHEET 3 AA1 9 LYS B 111 HIS B 115 -1 O LEU B 112 N PHE B 104 SHEET 4 AA1 9 HIS B 67 ILE B 72 1 N PHE B 70 O GLU B 113 SHEET 5 AA1 9 LEU A 2 VAL A 12 -1 N ASN A 6 O ALA B 69 SHEET 6 AA1 9 LEU A 45 LEU A 51 1 O CYS A 48 N LEU A 8 SHEET 7 AA1 9 GLY A 37 CYS A 42 -1 N LEU A 40 O LEU A 47 SHEET 8 AA1 9 THR A 29 TRP A 34 -1 N TRP A 34 O GLY A 37 SHEET 9 AA1 9 VAL B 135 PHE B 136 -1 O VAL B 135 N ARG A 33 SHEET 1 AA2 9 VAL A 91 LYS A 93 0 SHEET 2 AA2 9 SER A 101 LEU A 105 -1 O TYR A 103 N TRP A 92 SHEET 3 AA2 9 LYS A 111 HIS A 115 -1 O LEU A 112 N PHE A 104 SHEET 4 AA2 9 HIS A 67 SER A 71 1 N PHE A 70 O GLU A 113 SHEET 5 AA2 9 LEU B 5 VAL B 12 -1 O ASN B 6 N ALA A 69 SHEET 6 AA2 9 LEU B 45 LEU B 51 1 O CYS B 48 N LEU B 8 SHEET 7 AA2 9 GLY B 37 CYS B 42 -1 N LEU B 40 O LEU B 47 SHEET 8 AA2 9 THR B 29 TRP B 34 -1 N HIS B 31 O TYR B 39 SHEET 9 AA2 9 VAL A 135 PHE A 136 -1 N VAL A 135 O ARG B 33 LINK NE2 HIS A 7 MN MN A 204 1555 1555 2.17 LINK NE2 HIS A 67 MN MN A 201 1555 1555 2.20 LINK OD1 ASN A 95 K K A 202 1555 1555 2.69 LINK O SER A 97 K K A 202 1555 1555 2.96 LINK OG SER A 97 K K A 202 1555 1555 2.70 LINK O GLU A 98 K K A 202 1555 1555 3.10 LINK O GLY A 99 K K A 202 1555 1555 2.75 LINK OG SER A 101 K K A 202 1555 1555 2.80 LINK OE1 GLU A 113 MN MN A 201 1555 1555 2.03 LINK MN MN A 201 O FCN A 203 1555 1555 2.36 LINK MN MN A 201 O1P FCN A 203 1555 1555 2.01 LINK MN MN A 201 NE2 HIS B 7 1555 1555 2.19 LINK K K A 202 O HOH A 361 1555 1555 2.81 LINK MN MN A 204 O3P FCN A 205 1555 1555 2.10 LINK MN MN A 204 O FCN A 205 1555 1555 2.52 LINK MN MN A 204 NE2 HIS B 67 1555 1555 2.17 LINK MN MN A 204 OE1 GLU B 113 1555 1555 2.06 LINK OD1 ASN B 95 K K B 202 1555 1555 2.69 LINK O SER B 97 K K B 202 1555 1555 2.95 LINK OG SER B 97 K K B 202 1555 1555 2.76 LINK O GLU B 98 K K B 202 1555 1555 3.01 LINK O GLY B 99 K K B 202 1555 1555 2.66 LINK OG SER B 101 K K B 202 1555 1555 2.82 LINK K K B 202 O HOH B 352 1555 1555 2.80 SITE 1 AC1 4 HIS A 67 GLU A 113 FCN A 203 HIS B 7 SITE 1 AC2 7 ASN A 95 SER A 97 GLU A 98 GLY A 99 SITE 2 AC2 7 SER A 101 HIS A 115 HOH A 361 SITE 1 AC3 14 TYR A 65 HIS A 67 SER A 97 TYR A 103 SITE 2 AC3 14 GLU A 113 ARG A 122 MN A 201 HOH A 341 SITE 3 AC3 14 HOH A 355 HOH A 361 HIS B 7 THR B 9 SITE 4 AC3 14 TRP B 46 CYS B 48 SITE 1 AC4 4 HIS A 7 FCN A 205 HIS B 67 GLU B 113 SITE 1 AC5 7 ASN B 95 SER B 97 GLU B 98 GLY B 99 SITE 2 AC5 7 SER B 101 HIS B 115 HOH B 352 SITE 1 AC6 2 LEU B 5 HOH B 339 CRYST1 40.071 47.155 149.517 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006688 0.00000