HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-MAR-17 5V3H TITLE CRYSTAL STRUCTURE OF SMYD2 WITH SAM AND EPZ033294 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N- COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-,2.1.1.43; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTB-LIC KEYWDS PROTEIN-INHIBITOR COMPLEX, PROTEIN LYSINE METHYLTRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN REVDAT 4 06-MAR-24 5V3H 1 REMARK REVDAT 3 08-MAY-19 5V3H 1 JRNL REVDAT 2 13-JUN-18 5V3H 1 TITLE REVDAT 1 25-APR-18 5V3H 0 JRNL AUTH M.J.THOMENIUS,J.TOTMAN,D.HARVEY,L.H.MITCHELL,T.V.RIERA, JRNL AUTH 2 K.COSMOPOULOS,A.R.GRASSIAN,C.KLAUS,M.FOLEY,E.A.ADMIRAND, JRNL AUTH 3 H.JAHIC,C.MAJER,T.WIGLE,S.L.JACQUES,J.GUREASKO,D.BRACH, JRNL AUTH 4 T.LINGARAJ,K.WEST,S.SMITH,N.RIOUX,N.J.WATERS,C.TANG, JRNL AUTH 5 A.RAIMONDI,M.MUNCHHOF,J.E.MILLS,S.RIBICH,M.PORTER SCOTT, JRNL AUTH 6 K.W.KUNTZ,W.P.JANZEN,M.MOYER,J.J.SMITH,R.CHESWORTH, JRNL AUTH 7 R.A.COPELAND,P.A.BORIACK-SJODIN JRNL TITL SMALL MOLECULE INHIBITORS AND CRISPR/CAS9 MUTAGENESIS JRNL TITL 2 DEMONSTRATE THAT SMYD2 AND SMYD3 ACTIVITY ARE DISPENSABLE JRNL TITL 3 FOR AUTONOMOUS CANCER CELL PROLIFERATION. JRNL REF PLOS ONE V. 13 97372 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29856759 JRNL DOI 10.1371/JOURNAL.PONE.0197372 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 16191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3748 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3536 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5047 ; 1.345 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8180 ; 0.962 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;37.207 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;16.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.142 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 837 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -39.8324 1.8709 17.6891 REMARK 3 T TENSOR REMARK 3 T11: 0.4318 T22: 0.1628 REMARK 3 T33: 0.2788 T12: -0.0242 REMARK 3 T13: 0.0084 T23: 0.2103 REMARK 3 L TENSOR REMARK 3 L11: 3.7186 L22: 1.3193 REMARK 3 L33: 6.4001 L12: -1.8481 REMARK 3 L13: -1.8779 L23: 1.0412 REMARK 3 S TENSOR REMARK 3 S11: 0.3290 S12: 0.3820 S13: 0.5406 REMARK 3 S21: -0.2798 S22: 0.0358 S23: 0.0108 REMARK 3 S31: -1.5712 S32: -0.1444 S33: -0.3649 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9620 -18.7271 7.7733 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1976 REMARK 3 T33: 0.0735 T12: 0.0350 REMARK 3 T13: -0.0073 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 5.1591 L22: 2.3413 REMARK 3 L33: 4.6239 L12: 0.4235 REMARK 3 L13: -1.3265 L23: 0.6841 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: 0.5086 S13: -0.4703 REMARK 3 S21: -0.2634 S22: 0.0843 S23: -0.1446 REMARK 3 S31: 0.1869 S32: 0.1330 S33: 0.0611 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7712 -17.0922 15.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.5757 REMARK 3 T33: 0.2313 T12: 0.0996 REMARK 3 T13: -0.0173 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 4.7339 L22: 7.1349 REMARK 3 L33: 1.6438 L12: -0.6752 REMARK 3 L13: -2.0554 L23: 0.9683 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: -0.2134 S13: -0.6113 REMARK 3 S21: -0.4108 S22: -0.1193 S23: -0.7611 REMARK 3 S31: 0.0837 S32: 0.6884 S33: 0.0800 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2531 -7.5406 28.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.0523 REMARK 3 T33: 0.0400 T12: -0.0061 REMARK 3 T13: -0.0290 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.3118 L22: 1.7356 REMARK 3 L33: 6.1015 L12: -0.5046 REMARK 3 L13: -2.7966 L23: 1.0244 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.3165 S13: 0.1625 REMARK 3 S21: 0.2141 S22: 0.1136 S23: -0.0998 REMARK 3 S31: -0.3998 S32: 0.4879 S33: -0.2275 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 271 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5540 -22.7405 48.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.7002 T22: 0.8005 REMARK 3 T33: 0.2793 T12: 0.2004 REMARK 3 T13: -0.1174 T23: 0.1325 REMARK 3 L TENSOR REMARK 3 L11: 1.3455 L22: 6.6129 REMARK 3 L33: 1.9263 L12: 1.6307 REMARK 3 L13: 1.0496 L23: 0.9522 REMARK 3 S TENSOR REMARK 3 S11: 0.4582 S12: -0.2879 S13: -0.4822 REMARK 3 S21: 0.3305 S22: -0.1107 S23: -0.2233 REMARK 3 S31: 0.4609 S32: 0.5628 S33: -0.3475 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 312 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): -40.2283 -31.1733 40.2159 REMARK 3 T TENSOR REMARK 3 T11: 2.0087 T22: 0.2331 REMARK 3 T33: 0.4858 T12: 0.3775 REMARK 3 T13: 0.6648 T23: 0.2060 REMARK 3 L TENSOR REMARK 3 L11: 2.8657 L22: 3.1112 REMARK 3 L33: 6.2646 L12: 1.1004 REMARK 3 L13: 3.3868 L23: 3.5831 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: -0.4881 S13: -0.8358 REMARK 3 S21: 1.8553 S22: 0.4412 S23: 0.1040 REMARK 3 S31: 1.9894 S32: -0.0971 S33: -0.3808 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 356 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): -51.5469 -22.6820 33.8885 REMARK 3 T TENSOR REMARK 3 T11: 0.3872 T22: 0.2750 REMARK 3 T33: 0.3554 T12: -0.1392 REMARK 3 T13: 0.3228 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 2.5006 L22: 3.6017 REMARK 3 L33: 7.6534 L12: -0.0402 REMARK 3 L13: 1.5411 L23: -0.4387 REMARK 3 S TENSOR REMARK 3 S11: -0.2996 S12: 0.0229 S13: -0.6410 REMARK 3 S21: 0.5857 S22: -0.0023 S23: 0.6171 REMARK 3 S31: 1.0204 S32: -0.9404 S33: 0.3020 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 398 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): -57.7046 -16.6447 23.2628 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.8356 REMARK 3 T33: 0.5386 T12: -0.1707 REMARK 3 T13: 0.0478 T23: -0.2808 REMARK 3 L TENSOR REMARK 3 L11: 2.7812 L22: 8.6468 REMARK 3 L33: 1.4368 L12: 3.0210 REMARK 3 L13: 0.9063 L23: -0.5443 REMARK 3 S TENSOR REMARK 3 S11: -0.3139 S12: 0.0041 S13: -0.1712 REMARK 3 S21: -0.8046 S22: 0.3637 S23: 1.1188 REMARK 3 S31: 0.2428 S32: -0.8280 S33: -0.0498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5V3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% V/V ETHANOL, 0.1 M TRIS PH 7.5, 26% REMARK 280 W/V PEG3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.38750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.78000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.38750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -10 REMARK 465 ILE A -9 REMARK 465 ALA A -8 REMARK 465 ASP A -7 REMARK 465 TYR A -6 REMARK 465 HIS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 215 O4 PEG A 508 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 70 43.17 -140.02 REMARK 500 LYS A 87 -33.53 -37.43 REMARK 500 ASN A 143 43.35 -81.36 REMARK 500 VAL A 277 53.86 -115.96 REMARK 500 LYS A 281 76.99 -104.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 311 LYS A 312 -145.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 109.5 REMARK 620 3 CYS A 74 SG 101.4 96.4 REMARK 620 4 CYS A 78 SG 113.5 117.0 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 105.8 REMARK 620 3 HIS A 86 NE2 123.6 105.2 REMARK 620 4 CYS A 90 SG 114.5 105.0 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 114.7 REMARK 620 3 CYS A 264 SG 111.1 104.6 REMARK 620 4 CYS A 267 SG 92.2 116.1 118.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8WG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8WG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V37 RELATED DB: PDB DBREF 5V3H A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQADV 5V3H SER A -10 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ILE A -9 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ALA A -8 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ASP A -7 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H TYR A -6 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H LYS A -5 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ASP A -4 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ASP A -3 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ASP A -2 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H ASP A -1 UNP Q9NRG4 EXPRESSION TAG SEQADV 5V3H LYS A 0 UNP Q9NRG4 EXPRESSION TAG SEQRES 1 A 444 SER ILE ALA ASP TYR LYS ASP ASP ASP ASP LYS MET ARG SEQRES 2 A 444 ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SER PRO SEQRES 3 A 444 GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO PHE GLN SEQRES 4 A 444 VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR ALA TYR SEQRES 5 A 444 VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS GLU TYR SEQRES 6 A 444 CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS GLY ARG SEQRES 7 A 444 CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS GLN LYS SEQRES 8 A 444 GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER PRO MET SEQRES 9 A 444 VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU THR VAL SEQRES 10 A 444 ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS ILE HIS SEQRES 11 A 444 PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA VAL LYS SEQRES 12 A 444 GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN GLU LYS SEQRES 13 A 444 LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU HIS HIS SEQRES 14 A 444 PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN ASP SER SEQRES 15 A 444 LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN GLY PHE SEQRES 16 A 444 THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SER ALA SEQRES 17 A 444 ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER CYS CYS SEQRES 18 A 444 PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU ALA GLU SEQRES 19 A 444 VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU GLU VAL SEQRES 20 A 444 PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR GLU ASP SEQRES 21 A 444 ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE THR CYS SEQRES 22 A 444 GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP LYS ALA SEQRES 23 A 444 LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO LYS ALA SEQRES 24 A 444 GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG ASN VAL SEQRES 25 A 444 ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SER PRO SEQRES 26 A 444 SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN GLU LYS SEQRES 27 A 444 MET SER SER VAL PHE GLU ASP SER ASN VAL TYR MET LEU SEQRES 28 A 444 HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU TYR MET SEQRES 29 A 444 GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN LYS ILE SEQRES 30 A 444 ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SER LEU SEQRES 31 A 444 ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG LEU TYR SEQRES 32 A 444 MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS ALA LEU SEQRES 33 A 444 LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS GLY LYS SEQRES 34 A 444 ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU ILE GLU SEQRES 35 A 444 SER HIS HET SAM A 501 27 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET 8WG A 505 29 HET 8WG A 506 29 HET PEG A 507 7 HET PEG A 508 7 HET EDO A 509 4 HET GOL A 510 6 HET GOL A 511 6 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION HETNAM 8WG N-[1-({1-[(4-CHLOROPHENYL)METHYL]-1H-PYRAZOL-4- HETNAM 2 8WG YL}METHYL)AZETIDIN-3-YL]-1-CYCLOPROPYL-1H-1,2,3- HETNAM 3 8WG TRIAZOLE-4-CARBOXAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ZN 3(ZN 2+) FORMUL 6 8WG 2(C20 H22 CL N7 O) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 EDO C2 H6 O2 FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *129(H2 O) HELIX 1 AA1 LYS A -5 GLY A 5 1 11 HELIX 2 AA2 VAL A 45 ARG A 48 5 4 HELIX 3 AA3 ASN A 75 ASP A 82 1 8 HELIX 4 AA4 ASP A 82 LYS A 87 1 6 HELIX 5 AA5 GLU A 89 GLY A 97 1 9 HELIX 6 AA6 SER A 103 HIS A 119 1 17 HELIX 7 AA7 THR A 123 LYS A 127 5 5 HELIX 8 AA8 ALA A 130 PHE A 134 5 5 HELIX 9 AA9 HIS A 137 LEU A 141 5 5 HELIX 10 AB1 GLU A 144 SER A 161 1 18 HELIX 11 AB2 ASP A 168 GLY A 183 1 16 HELIX 12 AB3 ASP A 201 MET A 205 5 5 HELIX 13 AB4 PRO A 246 PHE A 259 1 14 HELIX 14 AB5 CYS A 264 LYS A 270 1 7 HELIX 15 AB6 LYS A 272 VAL A 277 1 6 HELIX 16 AB7 LYS A 287 LYS A 312 1 26 HELIX 17 AB8 SER A 313 SER A 329 1 17 HELIX 18 AB9 ASN A 336 MET A 353 1 18 HELIX 19 AC1 ASP A 355 TYR A 374 1 20 HELIX 20 AC2 SER A 378 LEU A 395 1 18 HELIX 21 AC3 HIS A 397 HIS A 416 1 20 HELIX 22 AC4 HIS A 420 GLU A 431 1 12 SHEET 1 AA1 2 LEU A 9 CYS A 13 0 SHEET 2 AA1 2 ARG A 19 ALA A 23 -1 O GLY A 20 N PHE A 12 SHEET 1 AA2 3 LEU A 32 PRO A 37 0 SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N LYS A 218 O LEU A 221 SHEET 1 AA3 3 ALA A 40 LEU A 43 0 SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O ILE A 198 N ALA A 40 SHEET 3 AA3 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 AA4 2 SER A 63 LYS A 64 0 SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AA5 2 ASN A 206 HIS A 207 0 SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 55 ZN ZN A 503 1555 1555 2.38 LINK SG CYS A 65 ZN ZN A 504 1555 1555 2.35 LINK SG CYS A 68 ZN ZN A 504 1555 1555 2.34 LINK SG CYS A 74 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 78 ZN ZN A 503 1555 1555 2.35 LINK NE2 HIS A 86 ZN ZN A 504 1555 1555 2.18 LINK SG CYS A 90 ZN ZN A 504 1555 1555 2.35 LINK SG CYS A 209 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 262 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 264 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 267 ZN ZN A 502 1555 1555 2.33 SITE 1 AC1 14 LYS A 17 ARG A 19 GLU A 135 HIS A 137 SITE 2 AC1 14 CYS A 181 ASN A 182 ALA A 203 LEU A 204 SITE 3 AC1 14 ASN A 206 HIS A 207 TYR A 240 TYR A 258 SITE 4 AC1 14 PHE A 260 HOH A 622 SITE 1 AC2 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 SITE 1 AC3 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AC4 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AC5 15 GLY A 183 PHE A 184 THR A 185 GLU A 187 SITE 2 AC5 15 ASP A 188 GLU A 189 VAL A 215 TYR A 217 SITE 3 AC5 15 TYR A 240 TYR A 258 LEU A 379 HIS A 416 SITE 4 AC5 15 8WG A 506 PEG A 508 GOL A 511 SITE 1 AC6 11 LEU A 108 GLY A 183 PHE A 184 THR A 185 SITE 2 AC6 11 SER A 196 ILE A 241 ASP A 242 TYR A 245 SITE 3 AC6 11 ARG A 253 HIS A 341 8WG A 505 SITE 1 AC7 7 PRO A 211 VAL A 213 VAL A 215 THR A 238 SITE 2 AC7 7 SER A 239 PEG A 508 GOL A 511 SITE 1 AC8 8 ILE A 214 VAL A 215 SER A 378 LEU A 379 SITE 2 AC8 8 ASN A 380 8WG A 505 PEG A 507 GOL A 511 SITE 1 AC9 5 ALA A 38 TYR A 39 LYS A 115 HOH A 636 SITE 2 AC9 5 HOH A 652 SITE 1 AD1 1 GLU A 104 SITE 1 AD2 7 SER A 239 TYR A 240 ILE A 241 ASP A 242 SITE 2 AD2 7 8WG A 505 PEG A 507 PEG A 508 CRYST1 157.560 54.775 79.702 90.00 114.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006347 0.000000 0.002855 0.00000 SCALE2 0.000000 0.018257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013757 0.00000