HEADER OXYGEN TRANSPORT 08-MAR-17 5V3T TITLE CRYSTAL STRUCTURE OF THE GROUP II TRUNCATED HEMOGLOBIN FROM BACILLUS TITLE 2 ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GROUP 2 TRUNCATED HEMOGLOBIN YJBI,PROTOZOAN/CYANOBACTERIAL COMPND 5 GLOBIN FAMILY PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: YJBI, GBAA_1209, BASH2_04647, BVB96_06425; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRUNCATED HEMOGLOBIN, OXYGEN TRANSPORT, HEME PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.VARNADO,E.SORELLE,J.SOMAN,J.S.OLSON REVDAT 3 04-OCT-23 5V3T 1 REMARK REVDAT 2 27-SEP-17 5V3T 1 REMARK REVDAT 1 12-APR-17 5V3T 0 JRNL AUTH C.L.VARNADO,E.SORELLE,J.SOMAN,J.S.OLSON JRNL TITL CRYSTAL STRUCTURE OF THE GROUP II TRUNCATED HEMOGLOBIN FROM JRNL TITL 2 BACILLUS ANTHRACIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 24734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3047 - 4.5764 0.97 1874 164 0.1670 0.1644 REMARK 3 2 4.5764 - 3.6326 0.97 1793 156 0.1539 0.1623 REMARK 3 3 3.6326 - 3.1735 0.91 1663 145 0.1864 0.1967 REMARK 3 4 3.1735 - 2.8833 0.88 1583 139 0.2166 0.3167 REMARK 3 5 2.8833 - 2.6767 0.88 1592 138 0.2111 0.2448 REMARK 3 6 2.6767 - 2.5189 0.87 1568 136 0.2065 0.2768 REMARK 3 7 2.5189 - 2.3927 0.88 1581 136 0.2092 0.2276 REMARK 3 8 2.3927 - 2.2886 0.88 1568 134 0.2123 0.2804 REMARK 3 9 2.2886 - 2.2005 0.88 1582 136 0.2105 0.2534 REMARK 3 10 2.2005 - 2.1245 0.88 1563 136 0.2130 0.2374 REMARK 3 11 2.1245 - 2.0581 0.90 1592 139 0.2333 0.2884 REMARK 3 12 2.0581 - 1.9993 0.89 1594 137 0.2407 0.3373 REMARK 3 13 1.9993 - 1.9466 0.90 1603 141 0.2459 0.3215 REMARK 3 14 1.9466 - 1.8991 0.90 1602 139 0.2462 0.3348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2213 REMARK 3 ANGLE : 1.138 3026 REMARK 3 CHIRALITY : 0.042 304 REMARK 3 PLANARITY : 0.006 387 REMARK 3 DIHEDRAL : 14.904 797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 22.0737 15.1725 7.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.2708 REMARK 3 T33: 0.2075 T12: 0.0055 REMARK 3 T13: -0.0037 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.0382 L22: 6.8116 REMARK 3 L33: 3.9955 L12: -0.1488 REMARK 3 L13: 0.2218 L23: 3.5681 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.0829 S13: 0.0199 REMARK 3 S21: 0.0112 S22: -0.2126 S23: 0.2904 REMARK 3 S31: -0.3534 S32: -0.3236 S33: 0.1845 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 12.6510 38.0303 17.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.1476 REMARK 3 T33: 0.1848 T12: -0.0067 REMARK 3 T13: -0.0311 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.5225 L22: 1.6599 REMARK 3 L33: 2.5341 L12: -1.2068 REMARK 3 L13: 0.2686 L23: -0.5378 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0839 S13: 0.0116 REMARK 3 S21: -0.0529 S22: 0.0368 S23: 0.0289 REMARK 3 S31: 0.0333 S32: -0.0297 S33: -0.0915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1179 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.3L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.899 REMARK 200 RESOLUTION RANGE LOW (A) : 56.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 3.150 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.28 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1UX8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.28000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.28000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.28000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.88500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.08500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.28000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.88500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.08500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 24.88500 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -61.08500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 24.88500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 61.08500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 49.77000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.28000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 24.88500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 61.08500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 345 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 128 REMARK 465 THR B 129 REMARK 465 GLY B 130 REMARK 465 GLU B 131 REMARK 465 ILE B 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 386 O HOH B 388 1.93 REMARK 500 O HOH A 340 O HOH A 343 1.96 REMARK 500 FE HEM A 201 C CYN A 202 1.98 REMARK 500 O HOH A 332 O HOH A 359 2.04 REMARK 500 OD1 ASN A 127 O HOH A 301 2.06 REMARK 500 FE HEM B 201 C CYN B 202 2.07 REMARK 500 O4 SO4 B 203 O HOH B 301 2.10 REMARK 500 O HOH A 306 O HOH A 358 2.12 REMARK 500 O HOH B 368 O HOH B 391 2.12 REMARK 500 O HOH B 375 O HOH B 389 2.13 REMARK 500 O GLY A 13 O HOH A 302 2.13 REMARK 500 O GLY B 13 O HOH B 302 2.16 REMARK 500 O1 SO4 A 204 O HOH A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 327 O HOH A 359 3655 1.96 REMARK 500 O HOH A 330 O HOH B 377 8555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 72 56.13 35.88 REMARK 500 MET B 72 53.55 33.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HEM A 201 NA 83.3 REMARK 620 3 HEM A 201 NB 85.1 87.5 REMARK 620 4 HEM A 201 NC 87.3 170.6 90.7 REMARK 620 5 HEM A 201 ND 86.3 90.9 171.4 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 NE2 REMARK 620 2 HEM B 201 NA 86.6 REMARK 620 3 HEM B 201 NB 90.4 91.3 REMARK 620 4 HEM B 201 NC 90.2 175.8 91.5 REMARK 620 5 HEM B 201 ND 87.6 89.1 178.0 88.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3V RELATED DB: PDB REMARK 900 RELATED ID: 5V3U RELATED DB: PDB DBREF 5V3T A 1 132 UNP Q81TQ7 Q81TQ7_BACAN 1 132 DBREF 5V3T B 1 132 UNP Q81TQ7 Q81TQ7_BACAN 1 132 SEQRES 1 A 132 MET SER LYS GLN PRO MET THR PRO PHE GLU ALA ILE GLY SEQRES 2 A 132 GLY GLU GLN CYS ILE GLU ILE LEU VAL ASP THR PHE TYR SEQRES 3 A 132 SER TYR VAL SER LYS HIS PRO ASP LEU SER PRO ILE PHE SEQRES 4 A 132 PRO ASP ASP LEU THR GLU THR ALA ARG LYS GLN LYS GLN SEQRES 5 A 132 PHE LEU THR GLN TYR LEU GLY GLY PRO ASN LEU TYR THR SEQRES 6 A 132 GLU GLU HIS GLY HIS PRO MET LEU ARG ALA ARG HIS LEU SEQRES 7 A 132 PRO PHE GLU ILE THR PRO LYS ARG ALA GLU ALA TRP LEU SEQRES 8 A 132 SER CYS MET GLU GLN ALA MET ASP ASP THR GLY VAL HIS SEQRES 9 A 132 GLY HIS ILE ARG GLU PHE VAL PHE GLU ARG LEU ALA LEU SEQRES 10 A 132 THR ALA GLN HIS MET VAL ASN THR PRO ASN GLU THR GLY SEQRES 11 A 132 GLU ILE SEQRES 1 B 132 MET SER LYS GLN PRO MET THR PRO PHE GLU ALA ILE GLY SEQRES 2 B 132 GLY GLU GLN CYS ILE GLU ILE LEU VAL ASP THR PHE TYR SEQRES 3 B 132 SER TYR VAL SER LYS HIS PRO ASP LEU SER PRO ILE PHE SEQRES 4 B 132 PRO ASP ASP LEU THR GLU THR ALA ARG LYS GLN LYS GLN SEQRES 5 B 132 PHE LEU THR GLN TYR LEU GLY GLY PRO ASN LEU TYR THR SEQRES 6 B 132 GLU GLU HIS GLY HIS PRO MET LEU ARG ALA ARG HIS LEU SEQRES 7 B 132 PRO PHE GLU ILE THR PRO LYS ARG ALA GLU ALA TRP LEU SEQRES 8 B 132 SER CYS MET GLU GLN ALA MET ASP ASP THR GLY VAL HIS SEQRES 9 B 132 GLY HIS ILE ARG GLU PHE VAL PHE GLU ARG LEU ALA LEU SEQRES 10 B 132 THR ALA GLN HIS MET VAL ASN THR PRO ASN GLU THR GLY SEQRES 11 B 132 GLU ILE HET HEM A 201 43 HET CYN A 202 2 HET SO4 A 203 5 HET SO4 A 204 5 HET HEM B 201 43 HET CYN B 202 2 HET SO4 B 203 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CYN CYANIDE ION HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CYN 2(C N 1-) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *170(H2 O) HELIX 1 AA1 THR A 7 ILE A 12 1 6 HELIX 2 AA2 GLY A 13 HIS A 32 1 20 HELIX 3 AA3 LEU A 35 PHE A 39 5 5 HELIX 4 AA4 LEU A 43 LEU A 58 1 16 HELIX 5 AA5 ASN A 62 GLY A 69 1 8 HELIX 6 AA6 MET A 72 HIS A 77 1 6 HELIX 7 AA7 THR A 83 GLY A 102 1 20 HELIX 8 AA8 HIS A 104 VAL A 123 1 20 HELIX 9 AA9 THR B 7 GLY B 13 1 7 HELIX 10 AB1 GLY B 13 HIS B 32 1 20 HELIX 11 AB2 LEU B 35 PHE B 39 5 5 HELIX 12 AB3 LEU B 43 LEU B 58 1 16 HELIX 13 AB4 ASN B 62 GLY B 69 1 8 HELIX 14 AB5 MET B 72 LEU B 78 1 7 HELIX 15 AB6 THR B 83 GLY B 102 1 20 HELIX 16 AB7 HIS B 104 VAL B 123 1 20 LINK NE2 HIS A 77 FE HEM A 201 1555 1555 2.10 LINK NE2 HIS B 77 FE HEM B 201 1555 1555 2.04 SITE 1 AC1 17 ILE A 38 PHE A 39 THR A 46 LYS A 49 SITE 2 AC1 17 GLN A 50 PHE A 53 TYR A 64 LEU A 73 SITE 3 AC1 17 HIS A 77 ILE A 82 ALA A 87 TRP A 90 SITE 4 AC1 17 ALA A 119 CYN A 202 HOH A 313 HOH A 338 SITE 5 AC1 17 ARG B 114 SITE 1 AC2 4 TYR A 26 GLN A 50 TRP A 90 HEM A 201 SITE 1 AC3 5 HIS A 68 HOH A 313 HOH A 317 PHE B 110 SITE 2 AC3 5 ARG B 114 SITE 1 AC4 5 HIS A 104 GLY A 105 HIS A 106 HOH A 303 SITE 2 AC4 5 HOH A 333 SITE 1 AC5 16 ILE B 38 PHE B 39 THR B 46 LYS B 49 SITE 2 AC5 16 GLN B 50 PHE B 53 TYR B 64 HIS B 77 SITE 3 AC5 16 PHE B 80 ALA B 87 TRP B 90 THR B 118 SITE 4 AC5 16 ALA B 119 CYN B 202 HOH B 309 HOH B 311 SITE 1 AC6 4 TYR B 26 GLN B 50 TRP B 90 HEM B 201 SITE 1 AC7 8 GLN A 56 THR A 65 HIS A 70 PRO A 71 SITE 2 AC7 8 HIS B 104 GLY B 105 HOH B 301 HOH B 307 CRYST1 49.770 122.170 112.560 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008884 0.00000