HEADER TRANSFERASE 08-MAR-17 5V3W TITLE CRYSTAL STRUCTURE OF THE APO FORM OF THIOESTERASE DOMAIN OF MTB PKS13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13 (TERMINATION POLYKETIDE COMPND 3 SYNTHASE); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 113-395); COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS, ERS027654_02263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOESTERASE DOMAIN, PKS13, MYCOBACTERIUM, POLYKETIDE SYNTHASE, KEYWDS 2 MYCOLIC ACID CONDENSATION, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 3 ALPHA/BETA HYDROLASE, THIOESTERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 4 04-OCT-23 5V3W 1 REMARK REVDAT 3 26-JUL-17 5V3W 1 JRNL REVDAT 2 19-JUL-17 5V3W 1 JRNL REVDAT 1 05-JUL-17 5V3W 0 JRNL AUTH A.AGGARWAL,M.K.PARAI,N.SHETTY,D.WALLIS,L.WOOLHISER, JRNL AUTH 2 C.HASTINGS,N.K.DUTTA,S.GALAVIZ,R.C.DHAKAL,R.SHRESTHA, JRNL AUTH 3 S.WAKABAYASHI,C.WALPOLE,D.MATTHEWS,D.FLOYD,P.SCULLION, JRNL AUTH 4 J.RILEY,O.EPEMOLU,S.NORVAL,T.SNAVELY,G.T.ROBERTSON, JRNL AUTH 5 E.J.RUBIN,T.R.IOERGER,F.A.SIRGEL,R.VAN DER MERWE, JRNL AUTH 6 P.D.VAN HELDEN,P.KELLER,E.C.BOTTGER,P.C.KARAKOUSIS, JRNL AUTH 7 A.J.LENAERTS,J.C.SACCHETTINI JRNL TITL DEVELOPMENT OF A NOVEL LEAD THAT TARGETS M. TUBERCULOSIS JRNL TITL 2 POLYKETIDE SYNTHASE 13. JRNL REF CELL V. 170 249 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28669536 JRNL DOI 10.1016/J.CELL.2017.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 58467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2601 - 4.7517 0.99 2840 139 0.1787 0.1767 REMARK 3 2 4.7517 - 3.7725 1.00 2727 145 0.1420 0.1621 REMARK 3 3 3.7725 - 3.2959 0.99 2692 141 0.1601 0.1783 REMARK 3 4 3.2959 - 2.9947 1.00 2664 167 0.1773 0.2206 REMARK 3 5 2.9947 - 2.7801 1.00 2658 142 0.1793 0.2077 REMARK 3 6 2.7801 - 2.6162 1.00 2680 141 0.1766 0.2194 REMARK 3 7 2.6162 - 2.4852 1.00 2639 151 0.1709 0.2042 REMARK 3 8 2.4852 - 2.3771 1.00 2664 142 0.1645 0.2038 REMARK 3 9 2.3771 - 2.2856 1.00 2635 142 0.1588 0.2318 REMARK 3 10 2.2856 - 2.2067 0.99 2616 140 0.1924 0.2439 REMARK 3 11 2.2067 - 2.1377 1.00 2634 143 0.1589 0.1847 REMARK 3 12 2.1377 - 2.0766 1.00 2642 141 0.1655 0.1901 REMARK 3 13 2.0766 - 2.0219 1.00 2632 150 0.1575 0.2068 REMARK 3 14 2.0219 - 1.9726 1.00 2608 154 0.1587 0.2011 REMARK 3 15 1.9726 - 1.9278 1.00 2592 129 0.1819 0.2403 REMARK 3 16 1.9278 - 1.8867 0.99 2654 129 0.2214 0.2645 REMARK 3 17 1.8867 - 1.8490 1.00 2619 141 0.1708 0.2015 REMARK 3 18 1.8490 - 1.8141 1.00 2621 129 0.1661 0.2103 REMARK 3 19 1.8141 - 1.7817 1.00 2610 155 0.1720 0.2343 REMARK 3 20 1.7817 - 1.7515 1.00 2612 131 0.1876 0.2437 REMARK 3 21 1.7515 - 1.7233 0.92 2469 107 0.1970 0.2240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4347 REMARK 3 ANGLE : 1.249 5901 REMARK 3 CHIRALITY : 0.056 636 REMARK 3 PLANARITY : 0.007 787 REMARK 3 DIHEDRAL : 13.599 1596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1451 THROUGH 1590 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5967 28.4162 20.7124 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1133 REMARK 3 T33: 0.0802 T12: -0.0068 REMARK 3 T13: 0.0073 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.5049 L22: 0.8278 REMARK 3 L33: 0.6491 L12: 0.1667 REMARK 3 L13: 0.4491 L23: -0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.1135 S13: -0.0144 REMARK 3 S21: 0.1185 S22: -0.0502 S23: 0.0119 REMARK 3 S31: 0.0003 S32: -0.0222 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1591 THROUGH 1645 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1087 17.4835 10.5855 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.2461 REMARK 3 T33: 0.1819 T12: -0.0324 REMARK 3 T13: -0.0005 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5023 L22: 6.4438 REMARK 3 L33: 1.4101 L12: -0.2770 REMARK 3 L13: 0.0510 L23: 3.1264 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: 0.1091 S13: -0.1317 REMARK 3 S21: 0.4254 S22: -0.3110 S23: 0.2525 REMARK 3 S31: 0.1855 S32: -0.3224 S33: 0.1590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1646 THROUGH 1727 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7725 37.8281 13.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.0959 REMARK 3 T33: 0.1177 T12: -0.0083 REMARK 3 T13: 0.0100 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.6903 L22: 2.0692 REMARK 3 L33: 1.6894 L12: 0.1902 REMARK 3 L13: 0.8152 L23: -0.3523 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.0114 S13: 0.1896 REMARK 3 S21: 0.0726 S22: -0.0181 S23: 0.0517 REMARK 3 S31: -0.1463 S32: -0.0484 S33: 0.0624 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1451 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8387 63.9590 4.7137 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0974 REMARK 3 T33: 0.0942 T12: 0.0007 REMARK 3 T13: -0.0008 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.1552 L22: 1.8233 REMARK 3 L33: 1.6709 L12: 0.0169 REMARK 3 L13: -0.0285 L23: 0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.0273 S13: 0.0041 REMARK 3 S21: -0.0577 S22: -0.0010 S23: -0.0858 REMARK 3 S31: -0.0569 S32: 0.1278 S33: -0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1572 THROUGH 1645 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7286 67.1741 -15.4144 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2264 REMARK 3 T33: 0.2594 T12: -0.0173 REMARK 3 T13: -0.0847 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.2552 L22: 1.3895 REMARK 3 L33: 1.9631 L12: -0.0849 REMARK 3 L13: 1.0244 L23: -1.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: 0.1752 S13: -0.0828 REMARK 3 S21: -0.4680 S22: 0.0685 S23: 0.3940 REMARK 3 S31: 0.2689 S32: -0.1693 S33: -0.0807 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1646 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1846 54.3374 7.4179 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0971 REMARK 3 T33: 0.1405 T12: -0.0137 REMARK 3 T13: 0.0152 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.1891 L22: 1.9301 REMARK 3 L33: 2.1630 L12: 0.0114 REMARK 3 L13: 0.5832 L23: -0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.0413 S13: -0.0843 REMARK 3 S21: 0.0969 S22: 0.0092 S23: 0.1289 REMARK 3 S31: 0.1020 S32: 0.0041 S33: -0.0531 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2479 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TEJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0-1.8 M AMMONIUM REMARK 280 SULFATE, 2%-5% V/V PPG P400, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.45650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.45650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 THR B 1589 REMARK 465 PHE B 1590 REMARK 465 ASN B 1591 REMARK 465 VAL B 1592 REMARK 465 THR B 1593 REMARK 465 ILE B 1594 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLN A1647 CG CD OE1 NE2 REMARK 470 MET A1669 CG SD CE REMARK 470 THR A1727 OG1 CG2 REMARK 470 GLN B1451 CG CD OE1 NE2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 ARG B1576 CG CD NE CZ NH1 NH2 REMARK 470 PHE B1585 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 VAL B1623 CG1 CG2 REMARK 470 GLN B1624 CG CD OE1 NE2 REMARK 470 MET B1669 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 1661 O HOH A 1901 1.89 REMARK 500 O HOH A 1985 O HOH A 2143 2.08 REMARK 500 O HOH B 1940 O HOH B 2091 2.12 REMARK 500 O HOH B 1903 O HOH B 1940 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2000 O HOH B 2084 2565 2.03 REMARK 500 O HOH B 1948 O HOH B 2085 2665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1533 -132.30 60.98 REMARK 500 GLN A1570 71.87 -103.10 REMARK 500 ALA A1596 128.05 -38.92 REMARK 500 SER B1533 -132.76 62.20 REMARK 500 GLN B1570 68.95 -102.57 REMARK 500 GLN B1624 70.57 -113.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2154 DISTANCE = 6.47 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2Q5 A 1801 REMARK 610 2Q5 B 1801 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2Q5 A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2Q5 B 1801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3X RELATED DB: PDB REMARK 900 RELATED ID: 5V3Y RELATED DB: PDB REMARK 900 RELATED ID: 5V3Z RELATED DB: PDB REMARK 900 RELATED ID: 5V40 RELATED DB: PDB REMARK 900 RELATED ID: 5V41 RELATED DB: PDB REMARK 900 RELATED ID: 5V42 RELATED DB: PDB DBREF1 5V3W A 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3W A A0A0T9CRX1 113 395 DBREF1 5V3W B 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3W B A0A0T9CRX1 113 395 SEQADV 5V3W SER A 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3W ASN A 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3W ALA A 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3W SER B 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3W ASN B 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3W ALA B 1450 UNP A0A0T9CRX EXPRESSION TAG SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET 2Q5 A1801 10 HET 2Q5 B1801 13 HETNAM 2Q5 (2R)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2- HETNAM 2 2Q5 HYDROXYPROPYL]OXY}PROPYL]OXY}PROPYL]OXY}PROPAN-1-OL FORMUL 3 2Q5 2(C12 H26 O5) FORMUL 5 HOH *471(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 ASN A 1591 1 21 HELIX 6 AA6 PRO A 1598 GLU A 1604 1 7 HELIX 7 AA7 ASP A 1606 GLN A 1620 1 15 HELIX 8 AA8 PRO A 1626 ILE A 1643 1 18 HELIX 9 AA9 ASP A 1644 ALA A 1646 5 3 HELIX 10 AB1 HIS A 1664 GLU A 1671 1 8 HELIX 11 AB2 PRO A 1672 VAL A 1676 5 5 HELIX 12 AB3 GLU A 1698 ALA A 1702 5 5 HELIX 13 AB4 ILE A 1707 THR A 1727 1 21 HELIX 14 AB5 SER B 1480 VAL B 1483 5 4 HELIX 15 AB6 TYR B 1484 ARG B 1490 1 7 HELIX 16 AB7 SER B 1506 GLY B 1523 1 18 HELIX 17 AB8 SER B 1533 LEU B 1549 1 17 HELIX 18 AB9 THR B 1571 LYS B 1588 1 18 HELIX 19 AC1 PRO B 1598 GLU B 1603 1 6 HELIX 20 AC2 ASP B 1606 SER B 1621 1 16 HELIX 21 AC3 PRO B 1626 ILE B 1643 1 18 HELIX 22 AC4 ASP B 1644 ALA B 1646 5 3 HELIX 23 AC5 HIS B 1664 GLU B 1671 1 8 HELIX 24 AC6 PRO B 1672 VAL B 1676 5 5 HELIX 25 AC7 GLU B 1698 ALA B 1702 5 5 HELIX 26 AC8 PRO B 1706 ARG B 1726 1 21 SHEET 1 AA1 8 ILE A1452 ASP A1453 0 SHEET 2 AA1 8 VAL A1456 ARG A1460 -1 O VAL A1456 N ASP A1453 SHEET 3 AA1 8 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 4 AA1 8 VAL A1471 PHE A1474 1 N VAL A1473 O PHE A1500 SHEET 5 AA1 8 TYR A1527 TRP A1532 1 O VAL A1530 N PHE A1472 SHEET 6 AA1 8 VAL A1553 ILE A1559 1 O ILE A1559 N GLY A1531 SHEET 7 AA1 8 VAL A1655 MET A1659 1 O THR A1656 N VAL A1556 SHEET 8 AA1 8 LEU A1690 PRO A1694 1 O GLU A1691 N LEU A1657 SHEET 1 AA2 8 ILE B1452 ASP B1453 0 SHEET 2 AA2 8 VAL B1456 ARG B1460 -1 O VAL B1456 N ASP B1453 SHEET 3 AA2 8 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 4 AA2 8 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 5 AA2 8 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 6 AA2 8 VAL B1553 ILE B1559 1 O ILE B1559 N GLY B1531 SHEET 7 AA2 8 VAL B1655 MET B1659 1 O THR B1656 N LEU B1558 SHEET 8 AA2 8 LEU B1690 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 2.07 CISPEP 2 GLU A 1705 PRO A 1706 0 3.39 CISPEP 3 GLY B 1525 PRO B 1526 0 2.13 CISPEP 4 GLU B 1705 PRO B 1706 0 3.94 SITE 1 AC1 10 SER A1533 ASP A1560 ALA A1561 VAL A1562 SITE 2 AC1 10 ASN A1640 ILE A1643 TYR A1663 TYR A1674 SITE 3 AC1 10 HIS A1699 HOH A1985 SITE 1 AC2 11 SER B1533 VAL B1537 ASP B1560 ALA B1561 SITE 2 AC2 11 ASN B1640 TYR B1663 HIS B1664 ALA B1667 SITE 3 AC2 11 TYR B1674 HIS B1699 HOH B1902 CRYST1 88.666 106.913 57.815 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017297 0.00000