HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-MAR-17 5V3X TITLE CRYSTAL STRUCTURE OF MTB PKS13 THIOESTERASE DOMAIN IN COMPLEX WITH TITLE 2 INHIBITOR TAM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13 (TERMINATION POLYKETIDE COMPND 3 SYNTHASE); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 113-395); COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS, ERS027654_02263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOESTERASE DOMAIN, TAM1 COMPLEX, PKS13, MYCOBACTERIUM, POLYKETIDE KEYWDS 2 SYNTHASE, MYCOLIC ACID CONDENSATION, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, ALPHA/BETA HYDROLASE, THIOESTERASE, TRANSFERASE- KEYWDS 4 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 4 04-OCT-23 5V3X 1 REMARK REVDAT 3 26-JUL-17 5V3X 1 JRNL REVDAT 2 19-JUL-17 5V3X 1 JRNL REVDAT 1 05-JUL-17 5V3X 0 JRNL AUTH A.AGGARWAL,M.K.PARAI,N.SHETTY,D.WALLIS,L.WOOLHISER, JRNL AUTH 2 C.HASTINGS,N.K.DUTTA,S.GALAVIZ,R.C.DHAKAL,R.SHRESTHA, JRNL AUTH 3 S.WAKABAYASHI,C.WALPOLE,D.MATTHEWS,D.FLOYD,P.SCULLION, JRNL AUTH 4 J.RILEY,O.EPEMOLU,S.NORVAL,T.SNAVELY,G.T.ROBERTSON, JRNL AUTH 5 E.J.RUBIN,T.R.IOERGER,F.A.SIRGEL,R.VAN DER MERWE, JRNL AUTH 6 P.D.VAN HELDEN,P.KELLER,E.C.BOTTGER,P.C.KARAKOUSIS, JRNL AUTH 7 A.J.LENAERTS,J.C.SACCHETTINI JRNL TITL DEVELOPMENT OF A NOVEL LEAD THAT TARGETS M. TUBERCULOSIS JRNL TITL 2 POLYKETIDE SYNTHASE 13. JRNL REF CELL V. 170 249 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28669536 JRNL DOI 10.1016/J.CELL.2017.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 39731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5918 - 4.6623 0.97 2975 180 0.1884 0.2322 REMARK 3 2 4.6623 - 3.7020 0.97 2822 164 0.1619 0.1950 REMARK 3 3 3.7020 - 3.2344 0.86 2487 136 0.1811 0.2356 REMARK 3 4 3.2344 - 2.9389 1.00 2890 146 0.2003 0.2724 REMARK 3 5 2.9389 - 2.7283 1.00 2873 156 0.2088 0.2725 REMARK 3 6 2.7283 - 2.5675 1.00 2886 133 0.2042 0.2574 REMARK 3 7 2.5675 - 2.4390 1.00 2860 147 0.1919 0.2435 REMARK 3 8 2.4390 - 2.3328 1.00 2829 155 0.1967 0.2564 REMARK 3 9 2.3328 - 2.2430 0.67 1892 88 0.2495 0.2896 REMARK 3 10 2.2430 - 2.1657 0.76 2139 120 0.2681 0.3621 REMARK 3 11 2.1657 - 2.0979 1.00 2855 146 0.2245 0.2607 REMARK 3 12 2.0979 - 2.0380 1.00 2808 148 0.2510 0.3000 REMARK 3 13 2.0380 - 1.9843 1.00 2848 150 0.2465 0.2925 REMARK 3 14 1.9843 - 1.9359 0.91 2575 123 0.3088 0.3247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4262 REMARK 3 ANGLE : 1.130 5801 REMARK 3 CHIRALITY : 0.048 618 REMARK 3 PLANARITY : 0.006 771 REMARK 3 DIHEDRAL : 15.252 1534 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1453 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4591 30.8861 23.5227 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1700 REMARK 3 T33: 0.1609 T12: -0.0041 REMARK 3 T13: -0.0030 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.1876 L22: 2.3459 REMARK 3 L33: 4.1002 L12: -0.0504 REMARK 3 L13: 0.6091 L23: -0.3209 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: -0.3295 S13: -0.0787 REMARK 3 S21: 0.2155 S22: 0.0013 S23: 0.0671 REMARK 3 S31: 0.2637 S32: -0.0772 S33: -0.0624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1572 THROUGH 1626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1090 21.3668 7.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.4436 T22: 0.3662 REMARK 3 T33: 0.4162 T12: -0.0339 REMARK 3 T13: 0.0309 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 7.5426 L22: 1.9760 REMARK 3 L33: 3.1869 L12: -1.3108 REMARK 3 L13: -0.3853 L23: -1.4432 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: -0.0020 S13: -0.5583 REMARK 3 S21: 0.3053 S22: -0.1895 S23: 0.5583 REMARK 3 S31: 0.4626 S32: -0.1599 S33: 0.1936 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1627 THROUGH 1644 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5348 21.2503 12.6912 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.2665 REMARK 3 T33: 0.4154 T12: 0.0045 REMARK 3 T13: -0.0122 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 3.7647 L22: 9.1725 REMARK 3 L33: 3.1381 L12: 0.6986 REMARK 3 L13: 0.0800 L23: 1.4928 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.3900 S13: -0.7442 REMARK 3 S21: -0.1418 S22: -0.0722 S23: 0.2220 REMARK 3 S31: 0.8588 S32: 0.1383 S33: -0.1287 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1645 THROUGH 1727 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2518 39.3381 12.7713 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1471 REMARK 3 T33: 0.1635 T12: 0.0264 REMARK 3 T13: 0.0044 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 5.0623 L22: 3.0064 REMARK 3 L33: 2.7546 L12: 0.3290 REMARK 3 L13: 0.3155 L23: -0.5602 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.2556 S13: 0.3197 REMARK 3 S21: -0.0425 S22: -0.0077 S23: -0.0213 REMARK 3 S31: -0.1630 S32: 0.0621 S33: 0.0690 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1451 THROUGH 1526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8570 71.0306 6.9901 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.1889 REMARK 3 T33: 0.4163 T12: -0.0036 REMARK 3 T13: -0.0397 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.7422 L22: 4.2796 REMARK 3 L33: 5.9599 L12: -0.1058 REMARK 3 L13: -1.8416 L23: -0.7952 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0442 S13: 0.6430 REMARK 3 S21: 0.0460 S22: 0.1645 S23: -0.5810 REMARK 3 S31: -0.1641 S32: 0.4102 S33: -0.0429 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1527 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4575 59.1635 1.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.1426 REMARK 3 T33: 0.3092 T12: 0.0167 REMARK 3 T13: 0.0320 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.4305 L22: 3.6428 REMARK 3 L33: 4.0137 L12: -0.0234 REMARK 3 L13: -1.3004 L23: 0.3987 REMARK 3 S TENSOR REMARK 3 S11: -0.2520 S12: 0.0665 S13: 0.0116 REMARK 3 S21: -0.3551 S22: 0.1507 S23: -0.4957 REMARK 3 S31: 0.2718 S32: 0.0711 S33: 0.0210 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1572 THROUGH 1626 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4442 69.8183 -17.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.3655 T22: 0.5107 REMARK 3 T33: 0.3442 T12: -0.1668 REMARK 3 T13: -0.0884 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 4.6505 L22: 9.3240 REMARK 3 L33: 3.6442 L12: 0.3635 REMARK 3 L13: 0.1238 L23: 2.2456 REMARK 3 S TENSOR REMARK 3 S11: -0.2021 S12: 0.2226 S13: 0.0269 REMARK 3 S21: -0.5969 S22: 0.3641 S23: 0.7618 REMARK 3 S31: 0.2556 S32: -0.3731 S33: -0.1598 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1627 THROUGH 1644 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6757 71.6706 -7.7101 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.2616 REMARK 3 T33: 0.3293 T12: -0.0631 REMARK 3 T13: -0.0435 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 7.6555 L22: 5.3234 REMARK 3 L33: 5.1390 L12: -6.3809 REMARK 3 L13: -1.2296 L23: 1.3209 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.2623 S13: 0.0300 REMARK 3 S21: 0.3989 S22: 0.3430 S23: 0.3087 REMARK 3 S31: 0.1341 S32: 0.1353 S33: -0.0647 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1645 THROUGH 1689 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2161 54.0972 0.3888 REMARK 3 T TENSOR REMARK 3 T11: 0.3852 T22: 0.1468 REMARK 3 T33: 0.2245 T12: -0.0481 REMARK 3 T13: 0.0156 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 7.7050 L22: 4.1442 REMARK 3 L33: 3.8640 L12: -1.4786 REMARK 3 L13: 1.5839 L23: -1.1658 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.4441 S13: -0.3810 REMARK 3 S21: -0.4724 S22: 0.0505 S23: 0.0392 REMARK 3 S31: 0.4272 S32: -0.1508 S33: -0.0376 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1690 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6160 58.9707 15.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.1919 REMARK 3 T33: 0.1869 T12: 0.0422 REMARK 3 T13: 0.0033 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 4.4104 L22: 5.2093 REMARK 3 L33: 6.4219 L12: 1.2733 REMARK 3 L13: 1.0029 L23: 1.1716 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: -0.4652 S13: 0.1542 REMARK 3 S21: 0.5351 S22: 0.1730 S23: -0.2523 REMARK 3 S31: 0.2664 S32: 0.0487 S33: -0.0533 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2347 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.936 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5V3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0-1.8 M AMMONIUM REMARK 280 SULFATE, 2%-5% V/V PPG P400, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.60350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.77300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.60350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.77300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 GLN A 1451 REMARK 465 ILE A 1452 REMARK 465 GLN A 1620 REMARK 465 SER A 1621 REMARK 465 GLY A 1622 REMARK 465 VAL A 1623 REMARK 465 GLN A 1624 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 GLY B 1466 REMARK 465 THR B 1589 REMARK 465 PHE B 1590 REMARK 465 ASN B 1591 REMARK 465 VAL B 1592 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1453 CG OD1 OD2 REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 ARG A1547 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1587 CG CD OE1 OE2 REMARK 470 LYS A1588 CG CD CE NZ REMARK 470 VAL A1592 CG1 CG2 REMARK 470 THR A1593 OG1 CG2 REMARK 470 ILE A1594 CG1 CG2 CD1 REMARK 470 ILE A1597 CG1 CG2 CD1 REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLU A1604 CG CD OE1 OE2 REMARK 470 ARG A1612 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1613 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A1614 CG1 CG2 REMARK 470 LEU A1615 CG CD1 CD2 REMARK 470 VAL A1618 CG1 CG2 REMARK 470 SER A1619 OG REMARK 470 ILE A1625 CG1 CG2 CD1 REMARK 470 ILE A1630 CG1 CG2 CD1 REMARK 470 GLU A1631 CG CD OE1 OE2 REMARK 470 MET A1669 CG SD CE REMARK 470 THR A1727 OG1 CG2 REMARK 470 GLN B1451 CG CD OE1 NE2 REMARK 470 ILE B1452 CG1 CG2 CD1 REMARK 470 ASP B1453 CG OD1 OD2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1567 CG CD OE1 OE2 REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 ARG B1576 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1577 CG CD CE NZ REMARK 470 PHE B1585 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 THR B1593 OG1 CG2 REMARK 470 ILE B1594 CG1 CG2 CD1 REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 GLN B1624 CG CD OE1 NE2 REMARK 470 ASP B1652 CG OD1 OD2 REMARK 470 MET B1669 CG SD CE REMARK 470 GLU B1713 CG CD OE1 OE2 REMARK 470 ARG B1726 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1901 O HOH B 2000 2.10 REMARK 500 NH1 ARG B 1563 O HOH B 1901 2.11 REMARK 500 O THR A 1589 O HOH A 1901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 1485 OE2 GLU B 1608 3545 1.71 REMARK 500 OE1 GLU A 1485 NH1 ARG B 1634 3545 1.71 REMARK 500 OE2 GLU A 1485 CG GLU B 1608 3545 2.01 REMARK 500 OE2 GLU A 1485 CD GLU B 1608 3545 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1533 -132.85 61.61 REMARK 500 GLN A1570 76.65 -109.06 REMARK 500 PRO A1595 -168.73 -72.77 REMARK 500 SER B1533 -131.74 59.69 REMARK 500 GLN B1570 78.07 -108.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2050 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2009 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I28 A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I28 B 1801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3W RELATED DB: PDB REMARK 900 RELATED ID: 5V3Y RELATED DB: PDB REMARK 900 RELATED ID: 5V3Z RELATED DB: PDB REMARK 900 RELATED ID: 5V40 RELATED DB: PDB REMARK 900 RELATED ID: 5V41 RELATED DB: PDB REMARK 900 RELATED ID: 5V42 RELATED DB: PDB DBREF1 5V3X A 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3X A A0A0T9CRX1 113 395 DBREF1 5V3X B 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3X B A0A0T9CRX1 113 395 SEQADV 5V3X SER A 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3X ASN A 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3X ALA A 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3X SER B 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3X ASN B 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3X ALA B 1450 UNP A0A0T9CRX EXPRESSION TAG SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET I28 A1801 29 HET I28 B1801 29 HETNAM I28 ETHYL 5-HYDROXY-4-[(4-METHYLPIPERIDIN-1-YL)METHYL]-2- HETNAM 2 I28 PHENYL-1-BENZOFURAN-3-CARBOXYLATE FORMUL 3 I28 2(C24 H27 N O4) FORMUL 5 HOH *259(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 PHE A 1590 1 20 HELIX 6 AA6 PRO A 1598 GLU A 1603 1 6 HELIX 7 AA7 ASP A 1606 SER A 1619 1 14 HELIX 8 AA8 PRO A 1626 THR A 1645 1 20 HELIX 9 AA9 HIS A 1664 GLU A 1671 1 8 HELIX 10 AB1 PRO A 1672 VAL A 1676 5 5 HELIX 11 AB2 GLU A 1698 ALA A 1702 5 5 HELIX 12 AB3 PRO A 1706 THR A 1727 1 22 HELIX 13 AB4 SER B 1480 VAL B 1483 5 4 HELIX 14 AB5 TYR B 1484 ARG B 1490 1 7 HELIX 15 AB6 SER B 1506 GLY B 1523 1 18 HELIX 16 AB7 SER B 1533 LEU B 1549 1 17 HELIX 17 AB8 THR B 1571 LYS B 1588 1 18 HELIX 18 AB9 PRO B 1598 GLU B 1603 1 6 HELIX 19 AC1 ASP B 1606 SER B 1621 1 16 HELIX 20 AC2 PRO B 1626 ALA B 1646 1 21 HELIX 21 AC3 HIS B 1664 GLU B 1671 1 8 HELIX 22 AC4 PRO B 1672 VAL B 1676 5 5 HELIX 23 AC5 GLU B 1698 ALA B 1702 5 5 HELIX 24 AC6 PRO B 1706 ARG B 1726 1 21 SHEET 1 AA1 7 VAL A1456 ARG A1460 0 SHEET 2 AA1 7 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 3 AA1 7 VAL A1471 PHE A1474 1 N VAL A1473 O PHE A1500 SHEET 4 AA1 7 TYR A1527 TRP A1532 1 O VAL A1530 N PHE A1472 SHEET 5 AA1 7 VAL A1553 ILE A1559 1 O GLY A1557 N LEU A1529 SHEET 6 AA1 7 VAL A1655 MET A1659 1 O TYR A1658 N LEU A1558 SHEET 7 AA1 7 LEU A1690 PRO A1694 1 O GLU A1691 N LEU A1657 SHEET 1 AA2 8 ILE B1452 ASP B1453 0 SHEET 2 AA2 8 VAL B1456 ARG B1460 -1 O VAL B1456 N ASP B1453 SHEET 3 AA2 8 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 4 AA2 8 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 5 AA2 8 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 6 AA2 8 VAL B1553 ILE B1559 1 O GLY B1557 N LEU B1529 SHEET 7 AA2 8 VAL B1655 MET B1659 1 O TYR B1658 N LEU B1558 SHEET 8 AA2 8 LEU B1690 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 -1.22 CISPEP 2 GLU A 1705 PRO A 1706 0 1.42 CISPEP 3 GLY B 1525 PRO B 1526 0 -0.73 CISPEP 4 GLU B 1705 PRO B 1706 0 0.79 SITE 1 AC1 11 GLN A1633 SER A1636 TYR A1637 ASN A1640 SITE 2 AC1 11 ASP A1644 TYR A1663 ASP A1666 ALA A1667 SITE 3 AC1 11 PHE A1670 GLU A1671 TYR A1674 SITE 1 AC2 11 TYR B1582 GLN B1633 TYR B1637 ASN B1640 SITE 2 AC2 11 ASP B1644 TYR B1663 ALA B1667 PHE B1670 SITE 3 AC2 11 GLU B1671 TYR B1674 HOH B1937 CRYST1 89.207 109.546 57.019 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017538 0.00000