HEADER TRANSFERASE 08-MAR-17 5V3Z TITLE CRYSTAL STRUCTURE OF THE D1607N MUTANT FORM OF THIOESTERASE DOMAIN OF TITLE 2 MTB PKS13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13 (TERMINATION POLYKETIDE COMPND 3 SYNTHASE); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 113-395); COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS, ERS027654_02263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOESTERASE DOMAIN, D1607N MUTANT, PKS13, MYCOBACTERIUM, POLYKETIDE KEYWDS 2 SYNTHASE, MYCOLIC ACID CONDENSATION, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, ALPHA/BETA HYDROLASE, THIOESTERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 4 04-OCT-23 5V3Z 1 REMARK REVDAT 3 26-JUL-17 5V3Z 1 JRNL REVDAT 2 19-JUL-17 5V3Z 1 JRNL REVDAT 1 05-JUL-17 5V3Z 0 JRNL AUTH A.AGGARWAL,M.K.PARAI,N.SHETTY,D.WALLIS,L.WOOLHISER, JRNL AUTH 2 C.HASTINGS,N.K.DUTTA,S.GALAVIZ,R.C.DHAKAL,R.SHRESTHA, JRNL AUTH 3 S.WAKABAYASHI,C.WALPOLE,D.MATTHEWS,D.FLOYD,P.SCULLION, JRNL AUTH 4 J.RILEY,O.EPEMOLU,S.NORVAL,T.SNAVELY,G.T.ROBERTSON, JRNL AUTH 5 E.J.RUBIN,T.R.IOERGER,F.A.SIRGEL,R.VAN DER MERWE, JRNL AUTH 6 P.D.VAN HELDEN,P.KELLER,E.C.BOTTGER,P.C.KARAKOUSIS, JRNL AUTH 7 A.J.LENAERTS,J.C.SACCHETTINI JRNL TITL DEVELOPMENT OF A NOVEL LEAD THAT TARGETS M. TUBERCULOSIS JRNL TITL 2 POLYKETIDE SYNTHASE 13. JRNL REF CELL V. 170 249 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28669536 JRNL DOI 10.1016/J.CELL.2017.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 42931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3763 - 4.6367 0.99 3157 154 0.1836 0.2038 REMARK 3 2 4.6367 - 3.6808 1.00 3000 163 0.1461 0.1855 REMARK 3 3 3.6808 - 3.2157 1.00 2955 168 0.1608 0.2051 REMARK 3 4 3.2157 - 2.9218 1.00 2962 142 0.1718 0.1943 REMARK 3 5 2.9218 - 2.7124 1.00 2941 160 0.1819 0.2530 REMARK 3 6 2.7124 - 2.5525 1.00 2960 149 0.1906 0.2509 REMARK 3 7 2.5525 - 2.4247 1.00 2898 150 0.1899 0.2693 REMARK 3 8 2.4247 - 2.3191 1.00 2943 145 0.2032 0.2784 REMARK 3 9 2.3191 - 2.2298 1.00 2899 159 0.2102 0.2610 REMARK 3 10 2.2298 - 2.1529 0.99 2849 171 0.2229 0.2575 REMARK 3 11 2.1529 - 2.0856 0.94 2742 148 0.2402 0.3180 REMARK 3 12 2.0856 - 2.0260 0.88 2561 132 0.2620 0.3037 REMARK 3 13 2.0260 - 1.9726 0.80 2293 140 0.2917 0.3058 REMARK 3 14 1.9726 - 1.9245 0.69 1985 95 0.3185 0.3634 REMARK 3 15 1.9245 - 1.8808 0.56 1618 92 0.3680 0.3715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4331 REMARK 3 ANGLE : 1.254 5881 REMARK 3 CHIRALITY : 0.057 636 REMARK 3 PLANARITY : 0.007 782 REMARK 3 DIHEDRAL : 12.974 1580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1451 THROUGH 1548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0326 28.0270 24.9223 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1545 REMARK 3 T33: 0.1441 T12: -0.0050 REMARK 3 T13: -0.0449 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.1142 L22: 3.0776 REMARK 3 L33: 3.2405 L12: 0.2084 REMARK 3 L13: -0.9286 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -0.2884 S13: -0.0972 REMARK 3 S21: 0.4303 S22: -0.0253 S23: -0.0328 REMARK 3 S31: 0.1521 S32: 0.1325 S33: -0.0943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1549 THROUGH 1626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4393 25.4625 10.1795 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.2206 REMARK 3 T33: 0.3407 T12: 0.0111 REMARK 3 T13: 0.0099 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.9520 L22: 1.3764 REMARK 3 L33: 1.5673 L12: -0.1194 REMARK 3 L13: 1.2542 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: 0.2193 S13: -0.3417 REMARK 3 S21: 0.0074 S22: -0.0637 S23: 0.4529 REMARK 3 S31: 0.2774 S32: -0.1711 S33: -0.0780 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1627 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9104 35.5892 13.1445 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1588 REMARK 3 T33: 0.1469 T12: 0.0190 REMARK 3 T13: 0.0057 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.7877 L22: 3.5408 REMARK 3 L33: 1.6283 L12: 0.6816 REMARK 3 L13: 0.2863 L23: -0.3576 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.0204 S13: 0.2241 REMARK 3 S21: 0.0038 S22: -0.0297 S23: 0.0862 REMARK 3 S31: -0.0516 S32: -0.1423 S33: -0.0244 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1451 THROUGH 1606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6830 65.6710 0.1818 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1511 REMARK 3 T33: 0.2145 T12: -0.0102 REMARK 3 T13: 0.0075 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 2.5540 REMARK 3 L33: 2.8862 L12: -0.2599 REMARK 3 L13: -0.2223 L23: -0.7908 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.1218 S13: 0.0153 REMARK 3 S21: -0.1965 S22: 0.0845 S23: -0.0196 REMARK 3 S31: 0.0172 S32: 0.1954 S33: -0.0703 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1607 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8770 61.0178 1.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1835 REMARK 3 T33: 0.2869 T12: -0.0202 REMARK 3 T13: 0.0104 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.6609 L22: 2.7509 REMARK 3 L33: 3.1937 L12: -0.2453 REMARK 3 L13: 0.4633 L23: -1.5023 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.0772 S13: -0.0397 REMARK 3 S21: -0.0679 S22: 0.1107 S23: 0.2607 REMARK 3 S31: 0.2147 S32: -0.0527 S33: -0.0849 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2246 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5V3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 2%-4% V/V PEG400, 1.8-2 M REMARK 280 AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.35200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.35200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 THR A 1727 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 PHE B 1590 REMARK 465 ASN B 1591 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 GLU A1567 CG CD OE1 OE2 REMARK 470 LYS A1588 CG CD CE NZ REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLU A1608 CG CD OE1 OE2 REMARK 470 ARG A1612 CG CD NE CZ NH1 NH2 REMARK 470 SER A1621 OG REMARK 470 GLU A1631 CG CD OE1 OE2 REMARK 470 GLN A1647 CG CD OE1 NE2 REMARK 470 GLU A1685 CG CD OE1 OE2 REMARK 470 GLN B1451 CG CD OE1 NE2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 LYS B1577 CG CD CE NZ REMARK 470 ARG B1581 CG CD NE CZ NH1 NH2 REMARK 470 PHE B1585 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 THR B1593 OG1 CG2 REMARK 470 ILE B1594 CG1 CG2 CD1 REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 GLN B1620 CG CD OE1 NE2 REMARK 470 GLN B1624 CG CD OE1 NE2 REMARK 470 MET B1669 CG SD CE REMARK 470 GLU B1713 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 1639 O HOH B 1901 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1533 -130.92 58.90 REMARK 500 ASP A1689 70.64 -101.62 REMARK 500 SER B1533 -130.40 57.30 REMARK 500 ASP B1689 72.89 -103.47 REMARK 500 ASP B1725 1.24 -67.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 1801 REMARK 610 1PE B 1802 REMARK 610 1PE B 1803 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 1803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3W RELATED DB: PDB REMARK 900 RELATED ID: 5V3X RELATED DB: PDB REMARK 900 RELATED ID: 5V3Y RELATED DB: PDB REMARK 900 RELATED ID: 5V40 RELATED DB: PDB REMARK 900 RELATED ID: 5V41 RELATED DB: PDB REMARK 900 RELATED ID: 5V42 RELATED DB: PDB DBREF1 5V3Z A 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3Z A A0A0T9CRX1 113 395 DBREF1 5V3Z B 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V3Z B A0A0T9CRX1 113 395 SEQADV 5V3Z SER A 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ASN A 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ALA A 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ASN A 1607 UNP A0A0T9CRX ASP 269 ENGINEERED MUTATION SEQADV 5V3Z SER B 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ASN B 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ALA B 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V3Z ASN B 1607 UNP A0A0T9CRX ASP 269 ENGINEERED MUTATION SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASN GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASN GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET 1PE A1801 8 HET SO4 B1801 5 HET 1PE B1802 13 HET 1PE B1803 10 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 3 1PE 3(C10 H22 O6) FORMUL 4 SO4 O4 S 2- FORMUL 7 HOH *335(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 ASN A 1591 1 21 HELIX 6 AA6 PRO A 1598 GLU A 1603 1 6 HELIX 7 AA7 ASP A 1606 SER A 1621 1 16 HELIX 8 AA8 PRO A 1626 ILE A 1643 1 18 HELIX 9 AA9 ASP A 1644 ALA A 1646 5 3 HELIX 10 AB1 HIS A 1664 GLU A 1671 1 8 HELIX 11 AB2 PRO A 1672 VAL A 1676 5 5 HELIX 12 AB3 GLU A 1698 ALA A 1702 5 5 HELIX 13 AB4 PRO A 1706 ARG A 1726 1 21 HELIX 14 AB5 SER B 1480 VAL B 1483 5 4 HELIX 15 AB6 TYR B 1484 ARG B 1490 1 7 HELIX 16 AB7 SER B 1506 GLY B 1523 1 18 HELIX 17 AB8 SER B 1533 LEU B 1549 1 17 HELIX 18 AB9 THR B 1571 THR B 1589 1 19 HELIX 19 AC1 PRO B 1598 GLU B 1603 1 6 HELIX 20 AC2 ASP B 1606 SER B 1621 1 16 HELIX 21 AC3 PRO B 1626 THR B 1645 1 20 HELIX 22 AC4 HIS B 1664 GLU B 1671 1 8 HELIX 23 AC5 PRO B 1672 VAL B 1676 5 5 HELIX 24 AC6 GLU B 1698 ALA B 1702 5 5 HELIX 25 AC7 PRO B 1706 ASP B 1725 1 20 SHEET 1 AA1 8 ILE A1452 ASP A1453 0 SHEET 2 AA1 8 VAL A1456 ARG A1460 -1 O VAL A1456 N ASP A1453 SHEET 3 AA1 8 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 4 AA1 8 VAL A1471 PHE A1474 1 N VAL A1473 O PHE A1500 SHEET 5 AA1 8 TYR A1527 TRP A1532 1 O VAL A1530 N PHE A1472 SHEET 6 AA1 8 VAL A1553 ILE A1559 1 O ILE A1559 N GLY A1531 SHEET 7 AA1 8 TYR A1651 MET A1659 1 O THR A1656 N VAL A1556 SHEET 8 AA1 8 VAL A1687 PRO A1694 1 O VAL A1693 N LEU A1657 SHEET 1 AA2 8 ILE B1452 ASP B1453 0 SHEET 2 AA2 8 VAL B1456 ARG B1460 -1 O VAL B1456 N ASP B1453 SHEET 3 AA2 8 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 4 AA2 8 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 5 AA2 8 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 6 AA2 8 VAL B1553 ILE B1559 1 O ILE B1559 N GLY B1531 SHEET 7 AA2 8 TYR B1651 MET B1659 1 O TYR B1658 N LEU B1558 SHEET 8 AA2 8 VAL B1687 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 1.07 CISPEP 2 GLU A 1705 PRO A 1706 0 2.23 CISPEP 3 GLY B 1525 PRO B 1526 0 -1.49 CISPEP 4 GLU B 1705 PRO B 1706 0 0.63 SITE 1 AC1 9 SER A1533 ALA A1561 ASN A1640 TYR A1663 SITE 2 AC1 9 ALA A1667 PHE A1670 TYR A1674 HIS A1699 SITE 3 AC1 9 HOH A2001 SITE 1 AC2 8 ASP B1606 ASN B1607 GLU B1608 HOH B1911 SITE 2 AC2 8 HOH B1914 HOH B1972 HOH B1977 HOH B1992 SITE 1 AC3 9 ARG B1563 ALA B1564 GLU B1566 GLU B1567 SITE 2 AC3 9 ILE B1643 ALA B1646 ILE B1648 TRP B1683 SITE 3 AC3 9 HOH B1902 SITE 1 AC4 9 SER B1533 ASP B1560 ALA B1561 ASN B1640 SITE 2 AC4 9 ILE B1643 TYR B1663 PHE B1670 HIS B1699 SITE 3 AC4 9 HOH B1909 CRYST1 88.704 108.904 58.057 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017224 0.00000