HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-MAR-17 5V40 TITLE CRYSTAL STRUCTURE OF MTB PKS13 THIOESTERASE DOMAIN IN COMPLEX WITH TITLE 2 INHIBITOR TAM6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13 (TERMINATION POLYKETIDE COMPND 3 SYNTHASE); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 113-395); COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS, ERS027654_02263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOESTERASE DOMAIN, TAM6 COMPLEX, PKS13, MYCOBACTERIUM, POLYKETIDE KEYWDS 2 SYNTHASE, MYCOLIC ACID CONDENSATION, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, ALPHA/BETA HYDROLASE, THIOESTERASE, TRANSFERASE- KEYWDS 4 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 4 04-OCT-23 5V40 1 REMARK REVDAT 3 26-JUL-17 5V40 1 JRNL REVDAT 2 19-JUL-17 5V40 1 JRNL REVDAT 1 05-JUL-17 5V40 0 JRNL AUTH A.AGGARWAL,M.K.PARAI,N.SHETTY,D.WALLIS,L.WOOLHISER, JRNL AUTH 2 C.HASTINGS,N.K.DUTTA,S.GALAVIZ,R.C.DHAKAL,R.SHRESTHA, JRNL AUTH 3 S.WAKABAYASHI,C.WALPOLE,D.MATTHEWS,D.FLOYD,P.SCULLION, JRNL AUTH 4 J.RILEY,O.EPEMOLU,S.NORVAL,T.SNAVELY,G.T.ROBERTSON, JRNL AUTH 5 E.J.RUBIN,T.R.IOERGER,F.A.SIRGEL,R.VAN DER MERWE, JRNL AUTH 6 P.D.VAN HELDEN,P.KELLER,E.C.BOTTGER,P.C.KARAKOUSIS, JRNL AUTH 7 A.J.LENAERTS,J.C.SACCHETTINI JRNL TITL DEVELOPMENT OF A NOVEL LEAD THAT TARGETS M. TUBERCULOSIS JRNL TITL 2 POLYKETIDE SYNTHASE 13. JRNL REF CELL V. 170 249 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28669536 JRNL DOI 10.1016/J.CELL.2017.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 38081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4606 - 4.7968 0.98 2741 137 0.1763 0.1602 REMARK 3 2 4.7968 - 3.8079 0.99 2662 126 0.1392 0.1622 REMARK 3 3 3.8079 - 3.3267 0.99 2625 137 0.1540 0.1899 REMARK 3 4 3.3267 - 3.0226 1.00 2596 155 0.1777 0.1770 REMARK 3 5 3.0226 - 2.8060 1.00 2616 129 0.1941 0.2814 REMARK 3 6 2.8060 - 2.6406 1.00 2598 148 0.2064 0.2536 REMARK 3 7 2.6406 - 2.5084 1.00 2568 137 0.1990 0.2589 REMARK 3 8 2.5084 - 2.3992 1.00 2610 132 0.1963 0.2628 REMARK 3 9 2.3992 - 2.3068 1.00 2588 132 0.2004 0.2655 REMARK 3 10 2.3068 - 2.2272 1.00 2552 142 0.2092 0.2508 REMARK 3 11 2.2272 - 2.1576 1.00 2584 137 0.2253 0.3033 REMARK 3 12 2.1576 - 2.0959 0.99 2535 123 0.2416 0.2666 REMARK 3 13 2.0959 - 2.0407 0.98 2527 147 0.2590 0.3255 REMARK 3 14 2.0407 - 1.9909 0.93 2370 127 0.2883 0.3043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4335 REMARK 3 ANGLE : 0.863 5898 REMARK 3 CHIRALITY : 0.053 632 REMARK 3 PLANARITY : 0.007 784 REMARK 3 DIHEDRAL : 11.886 2554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1452 THROUGH 1548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0602 28.8118 24.3889 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.1430 REMARK 3 T33: 0.1049 T12: -0.0169 REMARK 3 T13: -0.0295 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.3995 L22: 1.3761 REMARK 3 L33: 2.1432 L12: -0.0233 REMARK 3 L13: 0.1881 L23: 0.0750 REMARK 3 S TENSOR REMARK 3 S11: 0.0995 S12: -0.1382 S13: -0.1329 REMARK 3 S21: 0.2995 S22: -0.0172 S23: 0.0049 REMARK 3 S31: 0.2067 S32: -0.0427 S33: -0.0696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1549 THROUGH 1689 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9538 30.0309 11.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1515 REMARK 3 T33: 0.1649 T12: 0.0148 REMARK 3 T13: 0.0209 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.4008 L22: 0.6923 REMARK 3 L33: 0.9063 L12: 0.2188 REMARK 3 L13: 0.7174 L23: 0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0398 S13: -0.1176 REMARK 3 S21: 0.0254 S22: -0.0296 S23: 0.1840 REMARK 3 S31: 0.0499 S32: -0.0963 S33: -0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1690 THROUGH 1727 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4518 38.4352 13.7747 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.2027 REMARK 3 T33: 0.2015 T12: -0.0053 REMARK 3 T13: -0.0038 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.1760 L22: 1.4741 REMARK 3 L33: 0.5440 L12: -0.2540 REMARK 3 L13: 0.0964 L23: -0.8819 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.1311 S13: 0.1595 REMARK 3 S21: 0.0835 S22: -0.0159 S23: -0.2849 REMARK 3 S31: -0.1259 S32: 0.1760 S33: 0.0594 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1451 THROUGH 1571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0896 66.9803 5.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1441 REMARK 3 T33: 0.2031 T12: 0.0172 REMARK 3 T13: -0.0288 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.8256 L22: 2.5249 REMARK 3 L33: 1.9927 L12: -0.2298 REMARK 3 L13: -0.8205 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.0301 S13: 0.1569 REMARK 3 S21: 0.0115 S22: 0.1282 S23: -0.3139 REMARK 3 S31: 0.0405 S32: 0.1425 S33: -0.0623 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1572 THROUGH 1588 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0365 63.1396 -14.5764 REMARK 3 T TENSOR REMARK 3 T11: 0.5231 T22: 0.5016 REMARK 3 T33: 0.4082 T12: -0.1087 REMARK 3 T13: -0.1147 T23: 0.0955 REMARK 3 L TENSOR REMARK 3 L11: 1.0996 L22: 1.4280 REMARK 3 L33: 1.5514 L12: 0.9771 REMARK 3 L13: 0.4281 L23: -0.5627 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.1083 S13: -0.1465 REMARK 3 S21: 0.2589 S22: 0.4475 S23: 0.2191 REMARK 3 S31: -0.0630 S32: -0.5000 S33: -0.1582 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1589 THROUGH 1644 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0618 72.4283 -14.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2815 REMARK 3 T33: 0.2939 T12: -0.0971 REMARK 3 T13: -0.0941 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 1.0666 L22: 1.4574 REMARK 3 L33: 1.5011 L12: 0.0517 REMARK 3 L13: 0.2468 L23: 0.1112 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.1533 S13: -0.0105 REMARK 3 S21: -0.3478 S22: 0.1768 S23: 0.3813 REMARK 3 S31: 0.1986 S32: -0.3301 S33: -0.1343 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1645 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9693 56.3268 7.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.1628 REMARK 3 T33: 0.1880 T12: 0.0158 REMARK 3 T13: 0.0009 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.1018 L22: 2.3613 REMARK 3 L33: 1.9296 L12: 0.0088 REMARK 3 L13: -0.2326 L23: -0.3523 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0398 S13: -0.1114 REMARK 3 S21: 0.0576 S22: 0.0981 S23: 0.0882 REMARK 3 S31: 0.3797 S32: 0.0096 S33: -0.0285 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2504 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5V3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0-1.8 M AMMONIUM REMARK 280 SULFATE, 2%-5% V/V PPG P400, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.00850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.00850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 GLN A 1451 REMARK 465 ASN A 1591 REMARK 465 SER A 1621 REMARK 465 GLY A 1622 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 PHE B 1590 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A1452 CG1 CG2 CD1 REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 LYS A1588 CG CD CE NZ REMARK 470 THR A1589 OG1 CG2 REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLN A1620 CG CD OE1 NE2 REMARK 470 VAL A1623 CG1 CG2 REMARK 470 GLN A1624 CG CD OE1 NE2 REMARK 470 MET A1669 CG SD CE REMARK 470 THR A1727 OG1 CG2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1567 CG CD OE1 OE2 REMARK 470 GLN B1570 CG CD OE1 NE2 REMARK 470 LYS B1572 CG CD CE NZ REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 ARG B1576 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1577 CG CD CE NZ REMARK 470 TYR B1582 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B1585 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 THR B1589 OG1 CG2 REMARK 470 ASN B1591 CG OD1 ND2 REMARK 470 VAL B1592 CG1 CG2 REMARK 470 ILE B1594 CG1 CG2 CD1 REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 GLN B1620 CG CD OE1 NE2 REMARK 470 GLN B1624 CG CD OE1 NE2 REMARK 470 ASP B1652 CG OD1 OD2 REMARK 470 MET B1669 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 1639 O HOH A 1901 2.16 REMARK 500 O HOH B 2048 O HOH B 2074 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1533 -135.76 59.11 REMARK 500 GLN A1570 71.88 -109.87 REMARK 500 PRO A1598 79.15 -68.60 REMARK 500 ALA B1465 -26.22 -140.83 REMARK 500 SER B1533 -137.54 59.12 REMARK 500 GLN B1570 72.01 -112.92 REMARK 500 PRO B1598 94.38 -69.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JS1 A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JS1 B 1801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V3W RELATED DB: PDB REMARK 900 RELATED ID: 5V3X RELATED DB: PDB REMARK 900 RELATED ID: 5V3Y RELATED DB: PDB REMARK 900 RELATED ID: 5V3Z RELATED DB: PDB REMARK 900 RELATED ID: 5V41 RELATED DB: PDB REMARK 900 RELATED ID: 5V42 RELATED DB: PDB DBREF1 5V40 A 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V40 A A0A0T9CRX1 113 395 DBREF1 5V40 B 1451 1733 UNP A0A0T9CRX1_MYCTX DBREF2 5V40 B A0A0T9CRX1 113 395 SEQADV 5V40 SER A 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V40 ASN A 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V40 ALA A 1450 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V40 SER B 1448 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V40 ASN B 1449 UNP A0A0T9CRX EXPRESSION TAG SEQADV 5V40 ALA B 1450 UNP A0A0T9CRX EXPRESSION TAG SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET JS1 A1801 25 HET JS1 B1801 25 HETNAM JS1 ETHYL 4-[(DIMETHYLAMINO)METHYL]-5-HYDROXY-2-PHENYL-1- HETNAM 2 JS1 BENZOFURAN-3-CARBOXYLATE FORMUL 3 JS1 2(C20 H21 N O4) FORMUL 5 HOH *398(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 PHE A 1590 1 20 HELIX 6 AA6 PRO A 1598 GLU A 1603 1 6 HELIX 7 AA7 ASP A 1606 GLN A 1620 1 15 HELIX 8 AA8 PRO A 1626 THR A 1645 1 20 HELIX 9 AA9 HIS A 1664 GLU A 1671 1 8 HELIX 10 AB1 PRO A 1672 VAL A 1676 5 5 HELIX 11 AB2 GLU A 1698 ALA A 1702 5 5 HELIX 12 AB3 PRO A 1706 THR A 1727 1 22 HELIX 13 AB4 SER B 1480 VAL B 1483 5 4 HELIX 14 AB5 TYR B 1484 ARG B 1490 1 7 HELIX 15 AB6 SER B 1506 GLY B 1523 1 18 HELIX 16 AB7 SER B 1533 LEU B 1549 1 17 HELIX 17 AB8 THR B 1571 THR B 1589 1 19 HELIX 18 AB9 PRO B 1598 GLU B 1603 1 6 HELIX 19 AC1 ASP B 1606 SER B 1621 1 16 HELIX 20 AC2 PRO B 1626 THR B 1645 1 20 HELIX 21 AC3 HIS B 1664 GLU B 1671 1 8 HELIX 22 AC4 PRO B 1672 VAL B 1676 5 5 HELIX 23 AC5 GLU B 1698 ALA B 1702 5 5 HELIX 24 AC6 PRO B 1706 ARG B 1726 1 21 SHEET 1 AA1 7 VAL A1456 ARG A1460 0 SHEET 2 AA1 7 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 3 AA1 7 VAL A1471 PHE A1474 1 N VAL A1473 O PHE A1500 SHEET 4 AA1 7 TYR A1527 TRP A1532 1 O VAL A1530 N PHE A1472 SHEET 5 AA1 7 VAL A1553 ILE A1559 1 O GLY A1557 N LEU A1529 SHEET 6 AA1 7 VAL A1655 MET A1659 1 O THR A1656 N VAL A1556 SHEET 7 AA1 7 LEU A1690 PRO A1694 1 O GLU A1691 N LEU A1657 SHEET 1 AA2 8 ILE B1452 ASP B1453 0 SHEET 2 AA2 8 VAL B1456 ARG B1460 -1 O VAL B1456 N ASP B1453 SHEET 3 AA2 8 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 4 AA2 8 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 5 AA2 8 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 6 AA2 8 VAL B1553 ILE B1559 1 O GLY B1557 N LEU B1529 SHEET 7 AA2 8 VAL B1655 MET B1659 1 O THR B1656 N LEU B1558 SHEET 8 AA2 8 LEU B1690 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 -0.23 CISPEP 2 GLU A 1705 PRO A 1706 0 2.94 CISPEP 3 GLY B 1525 PRO B 1526 0 1.22 CISPEP 4 GLU B 1705 PRO B 1706 0 2.04 SITE 1 AC1 11 TYR A1582 GLN A1633 SER A1636 TYR A1637 SITE 2 AC1 11 ASN A1640 ASP A1644 ASP A1666 ALA A1667 SITE 3 AC1 11 PHE A1670 GLU A1671 TYR A1674 SITE 1 AC2 10 GLN B1633 SER B1636 TYR B1637 ASN B1640 SITE 2 AC2 10 ASP B1644 ASP B1666 ALA B1667 PHE B1670 SITE 3 AC2 10 GLU B1671 TYR B1674 CRYST1 88.017 109.364 57.029 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017535 0.00000