HEADER IMMUNE SYSTEM 10-MAR-17 5V4N TITLE STRUCTURE OF HLA-DR1 WITH BOUND ALPHA3(135-145) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-DRA1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA3(135-145)-HLA-DRB1*01:01; COMPND 8 CHAIN: C, F; COMPND 9 SYNONYM: MHC CLASS II ANTIGEN DRB1*1,DR1,MHC CLASS II ANTIGEN DRB1*1, COMPND 10 DR1,MHC CLASS II ANTIGEN DRB1*1,DR1, CHIMERIC CONSTRUCT,MHC CLASS II COMPND 11 ANTIGEN DRB1*1,DR1, CHIMERIC CONSTRUCT; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HLA-DR, IMMUNE COMPLEX, ANTIGEN PRESENATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.PETERSEN,J.ROSSJOHN REVDAT 6 13-NOV-24 5V4N 1 REMARK REVDAT 5 04-OCT-23 5V4N 1 HETSYN REVDAT 4 29-JUL-20 5V4N 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-MAY-17 5V4N 1 JRNL REVDAT 2 17-MAY-17 5V4N 1 JRNL REVDAT 1 03-MAY-17 5V4N 0 JRNL AUTH J.D.OOI,J.PETERSEN,Y.H.TAN,M.HUYNH,Z.J.WILLETT, JRNL AUTH 2 S.H.RAMARATHINAM,P.J.EGGENHUIZEN,K.L.LOH,K.A.WATSON,P.Y.GAN, JRNL AUTH 3 M.A.ALIKHAN,N.L.DUDEK,A.HANDEL,B.G.HUDSON,L.FUGGER, JRNL AUTH 4 D.A.POWER,S.G.HOLT,P.T.COATES,J.W.GREGERSEN,A.W.PURCELL, JRNL AUTH 5 S.R.HOLDSWORTH,N.L.LA GRUTA,H.H.REID,J.ROSSJOHN,A.R.KITCHING JRNL TITL DOMINANT PROTECTION FROM HLA-LINKED AUTOIMMUNITY BY JRNL TITL 2 ANTIGEN-SPECIFIC REGULATORY T CELLS. JRNL REF NATURE V. 545 243 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28467828 JRNL DOI 10.1038/NATURE22329 REMARK 2 REMARK 2 RESOLUTION. 3.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.8377 - 6.1848 0.99 2766 125 0.2230 0.2697 REMARK 3 2 6.1848 - 4.9101 1.00 2637 154 0.1920 0.2336 REMARK 3 3 4.9101 - 4.2897 1.00 2610 150 0.1665 0.2117 REMARK 3 4 4.2897 - 3.8977 0.99 2585 145 0.2044 0.2823 REMARK 3 5 3.8977 - 3.6184 1.00 2619 112 0.2507 0.3150 REMARK 3 6 3.6184 - 3.4051 0.99 2541 151 0.2649 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6381 REMARK 3 ANGLE : 0.655 8699 REMARK 3 CHIRALITY : 0.046 938 REMARK 3 PLANARITY : 0.004 1128 REMARK 3 DIHEDRAL : 16.330 3728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.4110 109.1652 136.7139 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2931 REMARK 3 T33: 0.3746 T12: -0.0680 REMARK 3 T13: 0.0311 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7765 L22: 1.2944 REMARK 3 L33: 1.8292 L12: -0.4310 REMARK 3 L13: 0.2357 L23: -0.5446 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.0141 S13: -0.0082 REMARK 3 S21: -0.1120 S22: -0.1382 S23: -0.2292 REMARK 3 S31: 0.1745 S32: 0.0174 S33: 0.0797 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16628 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.405 REMARK 200 RESOLUTION RANGE LOW (A) : 53.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10990 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 0.1M KNO3, AND 0.1M BIS REMARK 280 -TRIS-PROPANE (PH 7.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.04300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.43750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.43750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.04300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 ASP A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 GLY C 0 REMARK 465 GLY C 237 REMARK 465 GLY C 238 REMARK 465 SER C 239 REMARK 465 ILE C 240 REMARK 465 GLU C 241 REMARK 465 GLY C 242 REMARK 465 ARG C 243 REMARK 465 GLY C 244 REMARK 465 GLY C 245 REMARK 465 SER C 246 REMARK 465 GLY C 247 REMARK 465 ALA C 248 REMARK 465 SER C 249 REMARK 465 GLY C 250 REMARK 465 ASP C 251 REMARK 465 ILE D 1 REMARK 465 LYS D 2 REMARK 465 GLU D 3 REMARK 465 SER D 183 REMARK 465 GLY D 184 REMARK 465 ASP D 185 REMARK 465 ASP D 186 REMARK 465 ASP D 187 REMARK 465 ASP D 188 REMARK 465 LYS D 189 REMARK 465 GLY F 0 REMARK 465 GLY F 237 REMARK 465 GLY F 238 REMARK 465 SER F 239 REMARK 465 ILE F 240 REMARK 465 GLU F 241 REMARK 465 GLY F 242 REMARK 465 ARG F 243 REMARK 465 GLY F 244 REMARK 465 GLY F 245 REMARK 465 SER F 246 REMARK 465 GLY F 247 REMARK 465 ALA F 248 REMARK 465 SER F 249 REMARK 465 GLY F 250 REMARK 465 ASP F 251 REMARK 465 GLN F 356 REMARK 465 PRO F 357 REMARK 465 LEU F 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 THR A 182 OG1 CG2 REMARK 470 SER C 12 OG REMARK 470 ARG C 272 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 356 CG CD OE1 NE2 REMARK 470 LEU C 358 CG CD1 CD2 REMARK 470 GLN C 359 CG CD OE1 NE2 REMARK 470 ARG D 100 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 126 CG CD CE NZ REMARK 470 THR D 182 OG1 CG2 REMARK 470 SER F 12 OG REMARK 470 ARG F 272 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 354 CG CD CE NZ REMARK 470 GLN F 359 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 70 OG1 THR A 74 2.16 REMARK 500 O LEU D 70 OG1 THR D 74 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO D 114 C PRO D 115 N 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 -121.47 53.50 REMARK 500 LEU A 144 -164.59 -79.58 REMARK 500 ASN C 282 -119.64 57.46 REMARK 500 TYR C 327 -61.44 -122.97 REMARK 500 THR C 339 -62.04 -126.35 REMARK 500 GLN C 341 44.91 -106.30 REMARK 500 PRO C 357 42.46 -66.57 REMARK 500 PRO C 373 -167.58 -79.58 REMARK 500 ASN D 124 -119.36 56.85 REMARK 500 LEU D 144 -163.95 -78.46 REMARK 500 SER F 9 -169.10 -77.16 REMARK 500 ASN F 282 -118.93 57.19 REMARK 500 TYR F 327 -63.42 -124.88 REMARK 500 THR F 339 -59.87 -126.13 REMARK 500 GLN F 341 45.28 -107.70 REMARK 500 PRO F 373 -168.38 -78.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 5V4N A 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 5V4N C 0 10 PDB 5V4N 5V4N 0 10 DBREF 5V4N C 249 439 UNP P04229 2B11_HUMAN 29 219 DBREF 5V4N D 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 5V4N F 0 10 PDB 5V4N 5V4N 0 10 DBREF 5V4N F 249 439 UNP P04229 2B11_HUMAN 29 219 SEQADV 5V4N THR A 182 UNP P01903 EXPRESSION TAG SEQADV 5V4N SER A 183 UNP P01903 EXPRESSION TAG SEQADV 5V4N GLY A 184 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP A 185 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP A 186 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP A 187 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP A 188 UNP P01903 EXPRESSION TAG SEQADV 5V4N LYS A 189 UNP P01903 EXPRESSION TAG SEQADV 5V4N GLY C 11 PDB LINKER SEQADV 5V4N SER C 12 PDB LINKER SEQADV 5V4N GLY C 237 PDB LINKER SEQADV 5V4N GLY C 238 PDB LINKER SEQADV 5V4N SER C 239 PDB LINKER SEQADV 5V4N ILE C 240 PDB LINKER SEQADV 5V4N GLU C 241 PDB LINKER SEQADV 5V4N GLY C 242 PDB LINKER SEQADV 5V4N ARG C 243 PDB LINKER SEQADV 5V4N GLY C 244 PDB LINKER SEQADV 5V4N GLY C 245 PDB LINKER SEQADV 5V4N SER C 246 PDB LINKER SEQADV 5V4N GLY C 247 PDB LINKER SEQADV 5V4N ALA C 248 PDB LINKER SEQADV 5V4N SER C 249 UNP P04229 ALA 29 LINKER SEQADV 5V4N THR D 182 UNP P01903 EXPRESSION TAG SEQADV 5V4N SER D 183 UNP P01903 EXPRESSION TAG SEQADV 5V4N GLY D 184 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP D 185 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP D 186 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP D 187 UNP P01903 EXPRESSION TAG SEQADV 5V4N ASP D 188 UNP P01903 EXPRESSION TAG SEQADV 5V4N LYS D 189 UNP P01903 EXPRESSION TAG SEQADV 5V4N GLY F 11 PDB LINKER SEQADV 5V4N SER F 12 PDB LINKER SEQADV 5V4N GLY F 237 PDB LINKER SEQADV 5V4N GLY F 238 PDB LINKER SEQADV 5V4N SER F 239 PDB LINKER SEQADV 5V4N ILE F 240 PDB LINKER SEQADV 5V4N GLU F 241 PDB LINKER SEQADV 5V4N GLY F 242 PDB LINKER SEQADV 5V4N ARG F 243 PDB LINKER SEQADV 5V4N GLY F 244 PDB LINKER SEQADV 5V4N GLY F 245 PDB LINKER SEQADV 5V4N SER F 246 PDB LINKER SEQADV 5V4N GLY F 247 PDB LINKER SEQADV 5V4N ALA F 248 PDB LINKER SEQADV 5V4N SER F 249 UNP P04229 ALA 29 LINKER SEQRES 1 A 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 A 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 C 216 GLY TRP ILE SER LEU TRP LYS GLY PHE SER PHE GLY SER SEQRES 2 C 216 GLY GLY SER ILE GLU GLY ARG GLY GLY SER GLY ALA SER SEQRES 3 C 216 GLY ASP THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE SEQRES 4 C 216 GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU SEQRES 5 C 216 LEU GLU ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG SEQRES 6 C 216 PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU SEQRES 7 C 216 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS SEQRES 8 C 216 ASP LEU LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR SEQRES 9 C 216 CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL SEQRES 10 C 216 GLN ARG ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER SEQRES 11 C 216 LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 12 C 216 SER VAL SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG SEQRES 13 C 216 TRP PHE ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SEQRES 14 C 216 SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN SEQRES 15 C 216 THR LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU SEQRES 16 C 216 VAL TYR THR CYS GLN VAL GLU HIS PRO SER VAL THR SER SEQRES 17 C 216 PRO LEU THR VAL GLU TRP ARG ALA SEQRES 1 D 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 D 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 D 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 D 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 D 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 D 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 D 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 D 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 D 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 D 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 D 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 D 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 D 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 D 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 D 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 F 216 GLY TRP ILE SER LEU TRP LYS GLY PHE SER PHE GLY SER SEQRES 2 F 216 GLY GLY SER ILE GLU GLY ARG GLY GLY SER GLY ALA SER SEQRES 3 F 216 GLY ASP THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE SEQRES 4 F 216 GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU SEQRES 5 F 216 LEU GLU ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG SEQRES 6 F 216 PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU SEQRES 7 F 216 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS SEQRES 8 F 216 ASP LEU LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR SEQRES 9 F 216 CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL SEQRES 10 F 216 GLN ARG ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER SEQRES 11 F 216 LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 12 F 216 SER VAL SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG SEQRES 13 F 216 TRP PHE ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SEQRES 14 F 216 SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN SEQRES 15 F 216 THR LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU SEQRES 16 F 216 VAL TYR THR CYS GLN VAL GLU HIS PRO SER VAL THR SER SEQRES 17 F 216 PRO LEU THR VAL GLU TRP ARG ALA HET NAG A1000 14 HET NAG D1000 14 HET NAG F1000 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 3(C8 H15 N O6) HELIX 1 AA1 GLU A 46 ALA A 52 1 7 HELIX 2 AA2 GLU A 55 SER A 77 1 23 HELIX 3 AA3 ASN C 268 GLU C 271 5 4 HELIX 4 AA4 GLY C 303 GLN C 313 1 11 HELIX 5 AA5 GLN C 313 ALA C 322 1 10 HELIX 6 AA6 ALA C 322 TYR C 327 1 6 HELIX 7 AA7 TYR C 327 GLU C 336 1 10 HELIX 8 AA8 GLU D 47 ALA D 52 1 6 HELIX 9 AA9 GLU D 55 SER D 77 1 23 HELIX 10 AB1 GLY F 303 GLN F 313 1 11 HELIX 11 AB2 GLN F 313 ALA F 322 1 10 HELIX 12 AB3 ALA F 322 TYR F 327 1 6 HELIX 13 AB4 TYR F 327 GLU F 336 1 10 SHEET 1 AA1 8 GLU A 40 TRP A 43 0 SHEET 2 AA1 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 AA1 8 SER A 19 PHE A 26 -1 N PHE A 24 O ILE A 31 SHEET 4 AA1 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 AA1 8 PHE C 256 PHE C 267 -1 O TRP C 258 N TYR A 13 SHEET 6 AA1 8 ARG C 272 TYR C 281 -1 O ILE C 280 N GLN C 259 SHEET 7 AA1 8 GLU C 284 ASP C 290 -1 O SER C 286 N CYS C 279 SHEET 8 AA1 8 TYR C 296 ALA C 298 -1 O ARG C 297 N ARG C 288 SHEET 1 AA2 4 THR A 90 THR A 93 0 SHEET 2 AA2 4 ASN A 103 PHE A 112 -1 O PHE A 108 N THR A 90 SHEET 3 AA2 4 PHE A 145 PHE A 153 -1 O LYS A 147 N ILE A 109 SHEET 4 AA2 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 AA3 4 THR A 90 THR A 93 0 SHEET 2 AA3 4 ASN A 103 PHE A 112 -1 O PHE A 108 N THR A 90 SHEET 3 AA3 4 PHE A 145 PHE A 153 -1 O LYS A 147 N ILE A 109 SHEET 4 AA3 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 AA4 4 LYS A 126 VAL A 128 0 SHEET 2 AA4 4 ASN A 118 ARG A 123 -1 N TRP A 121 O VAL A 128 SHEET 3 AA4 4 TYR A 161 GLU A 166 -1 O ASP A 162 N LEU A 122 SHEET 4 AA4 4 LEU A 174 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 AA5 4 LYS C 347 SER C 353 0 SHEET 2 AA5 4 LEU C 363 PHE C 371 -1 O SER C 367 N THR C 349 SHEET 3 AA5 4 PHE C 404 GLU C 411 -1 O THR C 406 N VAL C 368 SHEET 4 AA5 4 VAL C 391 SER C 393 -1 N VAL C 392 O MET C 409 SHEET 1 AA6 4 LYS C 347 SER C 353 0 SHEET 2 AA6 4 LEU C 363 PHE C 371 -1 O SER C 367 N THR C 349 SHEET 3 AA6 4 PHE C 404 GLU C 411 -1 O THR C 406 N VAL C 368 SHEET 4 AA6 4 ILE C 397 GLN C 398 -1 N ILE C 397 O GLN C 405 SHEET 1 AA7 4 GLN C 385 GLU C 387 0 SHEET 2 AA7 4 GLU C 377 ARG C 382 -1 N ARG C 382 O GLN C 385 SHEET 3 AA7 4 VAL C 419 GLU C 425 -1 O THR C 421 N PHE C 381 SHEET 4 AA7 4 LEU C 433 ARG C 438 -1 O LEU C 433 N VAL C 424 SHEET 1 AA8 8 GLU D 40 TRP D 43 0 SHEET 2 AA8 8 ASP D 29 ASP D 35 -1 N ASP D 35 O GLU D 40 SHEET 3 AA8 8 SER D 19 PHE D 26 -1 N PHE D 24 O ILE D 31 SHEET 4 AA8 8 HIS D 5 ASN D 15 -1 N ILE D 8 O ASP D 25 SHEET 5 AA8 8 PHE F 256 PHE F 267 -1 O TRP F 258 N TYR D 13 SHEET 6 AA8 8 ARG F 272 TYR F 281 -1 O LEU F 276 N GLU F 263 SHEET 7 AA8 8 GLU F 284 ASP F 290 -1 O SER F 286 N CYS F 279 SHEET 8 AA8 8 TYR F 296 ALA F 298 -1 O ARG F 297 N ARG F 288 SHEET 1 AA9 4 VAL D 91 THR D 93 0 SHEET 2 AA9 4 ASN D 103 PHE D 112 -1 O ILE D 106 N LEU D 92 SHEET 3 AA9 4 PHE D 145 PHE D 153 -1 O PHE D 153 N ASN D 103 SHEET 4 AA9 4 SER D 133 GLU D 134 -1 N SER D 133 O TYR D 150 SHEET 1 AB1 4 VAL D 91 THR D 93 0 SHEET 2 AB1 4 ASN D 103 PHE D 112 -1 O ILE D 106 N LEU D 92 SHEET 3 AB1 4 PHE D 145 PHE D 153 -1 O PHE D 153 N ASN D 103 SHEET 4 AB1 4 LEU D 138 PRO D 139 -1 N LEU D 138 O ARG D 146 SHEET 1 AB2 4 LYS D 126 VAL D 128 0 SHEET 2 AB2 4 ASN D 118 ARG D 123 -1 N ARG D 123 O LYS D 126 SHEET 3 AB2 4 VAL D 160 GLU D 166 -1 O ASP D 162 N LEU D 122 SHEET 4 AB2 4 LEU D 174 GLU D 179 -1 O TRP D 178 N TYR D 161 SHEET 1 AB3 4 LYS F 347 SER F 353 0 SHEET 2 AB3 4 LEU F 363 PHE F 371 -1 O SER F 367 N THR F 349 SHEET 3 AB3 4 PHE F 404 GLU F 411 -1 O VAL F 408 N CYS F 366 SHEET 4 AB3 4 VAL F 391 SER F 393 -1 N VAL F 392 O MET F 409 SHEET 1 AB4 4 LYS F 347 SER F 353 0 SHEET 2 AB4 4 LEU F 363 PHE F 371 -1 O SER F 367 N THR F 349 SHEET 3 AB4 4 PHE F 404 GLU F 411 -1 O VAL F 408 N CYS F 366 SHEET 4 AB4 4 ILE F 397 GLN F 398 -1 N ILE F 397 O GLN F 405 SHEET 1 AB5 4 GLN F 385 GLU F 386 0 SHEET 2 AB5 4 GLU F 377 ARG F 382 -1 N ARG F 382 O GLN F 385 SHEET 3 AB5 4 VAL F 419 GLU F 425 -1 O THR F 421 N PHE F 381 SHEET 4 AB5 4 LEU F 433 ARG F 438 -1 O VAL F 435 N CYS F 422 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS C 264 CYS C 328 1555 1555 2.03 SSBOND 3 CYS C 366 CYS C 422 1555 1555 2.03 SSBOND 4 CYS D 107 CYS D 163 1555 1555 2.03 SSBOND 5 CYS F 264 CYS F 328 1555 1555 2.04 SSBOND 6 CYS F 366 CYS F 422 1555 1555 2.03 LINK ND2 ASN A 118 C1 NAG A1000 1555 1555 1.45 LINK ND2 ASN D 118 C1 NAG D1000 1555 1555 1.44 LINK ND2 ASN F 268 C1 NAG F1000 1555 1555 1.44 CISPEP 1 ASN A 15 PRO A 16 0 -1.36 CISPEP 2 THR A 113 PRO A 114 0 -0.72 CISPEP 3 TYR C 372 PRO C 373 0 0.99 CISPEP 4 ASN D 15 PRO D 16 0 -0.95 CISPEP 5 THR D 113 PRO D 114 0 -1.77 CISPEP 6 TYR F 372 PRO F 373 0 2.34 CRYST1 82.086 118.410 120.875 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008273 0.00000