HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 10-MAR-17 5V4P TITLE SACCHAROMYCES CEREVISIAE OYE 3 SOAKED WITH P-HYDROXYBENZALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OLD YELLOW ENZYME 3; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: OYE3, YPL171C, P2291; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OYE, FLAVOPROTEIN, P-HYDROXYBENZALDEHYDE, REDUCTASE, OXIDOREDUCTASE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.STEWART,R.W.POWELL III REVDAT 3 06-MAR-24 5V4P 1 LINK REVDAT 2 27-NOV-19 5V4P 1 REMARK REVDAT 1 14-MAR-18 5V4P 0 JRNL AUTH J.STEWART,R.W.POWELL III JRNL TITL SACCHAROMYCES CEREVISIAE OYE 3 SOAKED WITH JRNL TITL 2 P-HYDROXYBENZALDEHYDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 75794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9267 - 5.6192 1.00 2880 137 0.2063 0.1913 REMARK 3 2 5.6192 - 4.4685 0.99 2769 141 0.1811 0.2134 REMARK 3 3 4.4685 - 3.9061 1.00 2722 136 0.1680 0.1749 REMARK 3 4 3.9061 - 3.5501 1.00 2696 145 0.1790 0.2079 REMARK 3 5 3.5501 - 3.2962 1.00 2705 145 0.1780 0.2064 REMARK 3 6 3.2962 - 3.1023 1.00 2662 154 0.1878 0.2050 REMARK 3 7 3.1023 - 2.9472 1.00 2646 149 0.1814 0.1973 REMARK 3 8 2.9472 - 2.8191 1.00 2697 134 0.1707 0.1953 REMARK 3 9 2.8191 - 2.7107 0.99 2654 141 0.1690 0.2059 REMARK 3 10 2.7107 - 2.6172 1.00 2683 139 0.1737 0.2243 REMARK 3 11 2.6172 - 2.5355 1.00 2620 158 0.1780 0.2216 REMARK 3 12 2.5355 - 2.4631 1.00 2622 130 0.1850 0.2296 REMARK 3 13 2.4631 - 2.3983 1.00 2717 143 0.1761 0.2471 REMARK 3 14 2.3983 - 2.3398 1.00 2642 142 0.1753 0.2462 REMARK 3 15 2.3398 - 2.2867 1.00 2622 137 0.1839 0.2650 REMARK 3 16 2.2867 - 2.2380 1.00 2656 155 0.1710 0.2459 REMARK 3 17 2.2380 - 2.1933 1.00 2640 145 0.1746 0.1943 REMARK 3 18 2.1933 - 2.1519 1.00 2628 151 0.1786 0.2378 REMARK 3 19 2.1519 - 2.1135 1.00 2630 142 0.1799 0.2375 REMARK 3 20 2.1135 - 2.0777 1.00 2632 143 0.1835 0.2468 REMARK 3 21 2.0777 - 2.0442 1.00 2645 142 0.1871 0.2302 REMARK 3 22 2.0442 - 2.0128 1.00 2609 148 0.1863 0.2469 REMARK 3 23 2.0128 - 1.9832 1.00 2629 138 0.1925 0.2544 REMARK 3 24 1.9832 - 1.9553 1.00 2685 130 0.1966 0.2279 REMARK 3 25 1.9553 - 1.9288 1.00 2594 140 0.2013 0.2776 REMARK 3 26 1.9288 - 1.9038 1.00 2628 136 0.2018 0.2202 REMARK 3 27 1.9038 - 1.8800 1.00 2637 143 0.2151 0.2913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6624 REMARK 3 ANGLE : 1.100 8995 REMARK 3 CHIRALITY : 0.059 931 REMARK 3 PLANARITY : 0.007 1169 REMARK 3 DIHEDRAL : 13.626 3881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 24.924 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 30% (V/V) POLYETHYLENE GLYCOL MONOMETHYL ETHER 550, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.76650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.21050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.76650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.21050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -53.21050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.50500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASN A 397 REMARK 465 LYS A 398 REMARK 465 ASN A 399 REMARK 465 MET B 0 REMARK 465 ASN B 397 REMARK 465 LYS B 398 REMARK 465 ASN B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 698 1.80 REMARK 500 O HOH A 688 O HOH A 693 1.82 REMARK 500 NH1 ARG B 371 O HOH B 501 2.01 REMARK 500 O HOH A 577 O HOH A 676 2.05 REMARK 500 O MET A 143 O HOH A 501 2.06 REMARK 500 NZ LYS B 163 O HOH B 502 2.07 REMARK 500 N GLY A 347 O HOH A 502 2.10 REMARK 500 O HOH A 644 O HOH A 676 2.11 REMARK 500 OE1 GLU B 389 O HOH B 503 2.13 REMARK 500 OD2 ASP A 13 NH2 ARG A 334 2.15 REMARK 500 O MET A 143 O HOH A 501 2.18 REMARK 500 OE2 GLU B 96 O HOH B 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 151.05 -42.84 REMARK 500 ILE A 88 34.82 -140.89 REMARK 500 SER A 252 33.73 75.30 REMARK 500 ASP A 355 41.20 -96.48 REMARK 500 TYR A 382 -65.99 -127.05 REMARK 500 ASP A 393 36.87 -75.29 REMARK 500 LEU A 394 1.82 -160.15 REMARK 500 GLU B 71 152.76 -42.17 REMARK 500 ILE B 88 35.27 -144.80 REMARK 500 ASP B 355 36.26 -99.72 REMARK 500 TYR B 382 -60.99 -126.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 179 OD1 REMARK 620 2 TOE A 404 OF' 106.5 REMARK 620 3 TOE A 404 OI' 77.4 66.9 REMARK 620 4 TOE A 404 O2' 85.9 164.2 126.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 179 OD1 REMARK 620 2 TOE B 404 OF' 90.7 REMARK 620 3 TOE B 404 OC' 83.8 65.5 REMARK 620 4 TOE B 404 O2' 90.3 137.2 72.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V4V RELATED DB: PDB DBREF 5V4P A 0 399 UNP P41816 OYE3_YEAST 1 400 DBREF 5V4P B 0 399 UNP P41816 OYE3_YEAST 1 400 SEQRES 1 A 400 MET PRO PHE VAL LYS GLY PHE GLU PRO ILE SER LEU ARG SEQRES 2 A 400 ASP THR ASN LEU PHE GLU PRO ILE LYS ILE GLY ASN THR SEQRES 3 A 400 GLN LEU ALA HIS ARG ALA VAL MET PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA THR HIS PRO GLY ASN ILE PRO ASN LYS GLU SEQRES 5 A 400 TRP ALA ALA VAL TYR TYR GLY GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY THR PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY ILE TRP SER SEQRES 8 A 400 ASP GLU GLN VAL ALA GLU TRP LYS ASN ILE PHE LEU ALA SEQRES 9 A 400 ILE HIS ASP CYS GLN SER PHE ALA TRP VAL GLN LEU TRP SEQRES 10 A 400 SER LEU GLY TRP ALA SER PHE PRO ASP VAL LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP CYS ALA SER ASP ARG VAL TYR SEQRES 12 A 400 MET ASN ALA THR LEU GLN GLU LYS ALA LYS ASP ALA ASN SEQRES 13 A 400 ASN LEU GLU HIS SER LEU THR LYS ASP ASP ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS ASP TYR ILE HIS ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 LYS ARG THR ASP GLU TYR GLY GLY THR ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU ILE GLU SEQRES 19 A 400 THR ILE GLY PRO GLU ARG VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY THR PHE ASN SER MET SER GLY GLY ALA GLU PRO SEQRES 21 A 400 GLY ILE ILE ALA GLN TYR SER TYR VAL LEU GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASP PRO SER LEU VAL SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR SER GLU GLY THR ASN ASP PHE SEQRES 25 A 400 ALA TYR SER ILE TRP LYS GLY PRO ILE ILE ARG ALA GLY SEQRES 26 A 400 ASN TYR ALA LEU HIS PRO GLU VAL VAL ARG GLU GLN VAL SEQRES 27 A 400 LYS ASP PRO ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL TYR ARG LEU GLU GLU GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG SER THR PHE TYR THR SEQRES 30 A 400 MET SER ALA GLU GLY TYR THR ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA VAL ASP LEU GLY TRP ASN LYS ASN SEQRES 1 B 400 MET PRO PHE VAL LYS GLY PHE GLU PRO ILE SER LEU ARG SEQRES 2 B 400 ASP THR ASN LEU PHE GLU PRO ILE LYS ILE GLY ASN THR SEQRES 3 B 400 GLN LEU ALA HIS ARG ALA VAL MET PRO PRO LEU THR ARG SEQRES 4 B 400 MET ARG ALA THR HIS PRO GLY ASN ILE PRO ASN LYS GLU SEQRES 5 B 400 TRP ALA ALA VAL TYR TYR GLY GLN ARG ALA GLN ARG PRO SEQRES 6 B 400 GLY THR MET ILE ILE THR GLU GLY THR PHE ILE SER PRO SEQRES 7 B 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY ILE TRP SER SEQRES 8 B 400 ASP GLU GLN VAL ALA GLU TRP LYS ASN ILE PHE LEU ALA SEQRES 9 B 400 ILE HIS ASP CYS GLN SER PHE ALA TRP VAL GLN LEU TRP SEQRES 10 B 400 SER LEU GLY TRP ALA SER PHE PRO ASP VAL LEU ALA ARG SEQRES 11 B 400 ASP GLY LEU ARG TYR ASP CYS ALA SER ASP ARG VAL TYR SEQRES 12 B 400 MET ASN ALA THR LEU GLN GLU LYS ALA LYS ASP ALA ASN SEQRES 13 B 400 ASN LEU GLU HIS SER LEU THR LYS ASP ASP ILE LYS GLN SEQRES 14 B 400 TYR ILE LYS ASP TYR ILE HIS ALA ALA LYS ASN SER ILE SEQRES 15 B 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 B 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 B 400 LYS ARG THR ASP GLU TYR GLY GLY THR ILE GLU ASN ARG SEQRES 18 B 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU ILE GLU SEQRES 19 B 400 THR ILE GLY PRO GLU ARG VAL GLY LEU ARG LEU SER PRO SEQRES 20 B 400 TYR GLY THR PHE ASN SER MET SER GLY GLY ALA GLU PRO SEQRES 21 B 400 GLY ILE ILE ALA GLN TYR SER TYR VAL LEU GLY GLU LEU SEQRES 22 B 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 B 400 HIS LEU VAL GLU PRO ARG VAL THR ASP PRO SER LEU VAL SEQRES 24 B 400 GLU GLY GLU GLY GLU TYR SER GLU GLY THR ASN ASP PHE SEQRES 25 B 400 ALA TYR SER ILE TRP LYS GLY PRO ILE ILE ARG ALA GLY SEQRES 26 B 400 ASN TYR ALA LEU HIS PRO GLU VAL VAL ARG GLU GLN VAL SEQRES 27 B 400 LYS ASP PRO ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 B 400 ILE SER ASN PRO ASP LEU VAL TYR ARG LEU GLU GLU GLY SEQRES 29 B 400 LEU PRO LEU ASN LYS TYR ASP ARG SER THR PHE TYR THR SEQRES 30 B 400 MET SER ALA GLU GLY TYR THR ASP TYR PRO THR TYR GLU SEQRES 31 B 400 GLU ALA VAL ASP LEU GLY TRP ASN LYS ASN HET FMN A 401 31 HET HBA A 402 9 HET NA A 403 1 HET TOE A 404 11 HET TOE A 405 11 HET FMN B 401 31 HET HBA B 402 9 HET NA B 403 1 HET TOE B 404 11 HET TOE B 405 11 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM HBA P-HYDROXYBENZALDEHYDE HETNAM NA SODIUM ION HETNAM TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 HBA 2(C7 H6 O2) FORMUL 5 NA 2(NA 1+) FORMUL 6 TOE 4(C7 H16 O4) FORMUL 13 HOH *396(H2 O) HELIX 1 AA1 THR A 14 GLU A 18 5 5 HELIX 2 AA2 TRP A 52 ALA A 61 1 10 HELIX 3 AA3 SER A 76 GLY A 80 5 5 HELIX 4 AA4 SER A 90 CYS A 107 1 18 HELIX 5 AA5 LEU A 118 SER A 122 5 5 HELIX 6 AA6 PHE A 123 ASP A 130 1 8 HELIX 7 AA7 ASN A 144 ALA A 154 1 11 HELIX 8 AA8 THR A 162 GLY A 184 1 23 HELIX 9 AA9 TYR A 196 ASP A 203 1 8 HELIX 10 AB1 THR A 216 ALA A 221 1 6 HELIX 11 AB2 ALA A 221 GLY A 236 1 16 HELIX 12 AB3 THR A 249 MET A 253 5 5 HELIX 13 AB4 SER A 254 GLU A 258 5 5 HELIX 14 AB5 GLY A 260 ALA A 278 1 19 HELIX 15 AB6 ASP A 310 TRP A 316 1 7 HELIX 16 AB7 HIS A 329 VAL A 337 1 9 HELIX 17 AB8 GLY A 347 ASN A 353 1 7 HELIX 18 AB9 ASP A 355 GLY A 363 1 9 HELIX 19 AC1 ASP A 370 PHE A 374 5 5 HELIX 20 AC2 THR A 387 ASP A 393 1 7 HELIX 21 AC3 THR B 14 GLU B 18 5 5 HELIX 22 AC4 TRP B 52 ALA B 61 1 10 HELIX 23 AC5 SER B 76 GLY B 80 5 5 HELIX 24 AC6 SER B 90 CYS B 107 1 18 HELIX 25 AC7 LEU B 118 SER B 122 5 5 HELIX 26 AC8 PHE B 123 ASP B 130 1 8 HELIX 27 AC9 ASN B 144 ALA B 154 1 11 HELIX 28 AD1 THR B 162 ALA B 183 1 22 HELIX 29 AD2 TYR B 196 ASP B 203 1 8 HELIX 30 AD3 THR B 216 ALA B 221 1 6 HELIX 31 AD4 ALA B 221 GLY B 236 1 16 HELIX 32 AD5 SER B 254 GLU B 258 5 5 HELIX 33 AD6 GLY B 260 ALA B 278 1 19 HELIX 34 AD7 ASN B 309 TRP B 316 1 8 HELIX 35 AD8 HIS B 329 VAL B 337 1 9 HELIX 36 AD9 GLY B 347 ASN B 353 1 7 HELIX 37 AE1 ASP B 355 GLY B 363 1 9 HELIX 38 AE2 ASP B 370 PHE B 374 5 5 HELIX 39 AE3 THR B 387 LEU B 394 1 8 SHEET 1 AA1 2 ILE A 20 ILE A 22 0 SHEET 2 AA1 2 THR A 25 LEU A 27 -1 O LEU A 27 N ILE A 20 SHEET 1 AA210 THR A 73 PHE A 74 0 SHEET 2 AA210 PHE A 110 TRP A 116 1 O TRP A 116 N THR A 73 SHEET 3 AA210 GLY A 187 HIS A 191 1 O GLU A 189 N VAL A 113 SHEET 4 AA210 VAL A 240 LEU A 244 1 O GLY A 241 N ILE A 190 SHEET 5 AA210 PHE A 284 VAL A 288 1 O HIS A 286 N LEU A 242 SHEET 6 AA210 ILE A 320 ALA A 323 1 O ILE A 321 N LEU A 287 SHEET 7 AA210 THR A 342 GLY A 345 1 O GLY A 345 N ARG A 322 SHEET 8 AA210 ALA A 31 MET A 33 1 N VAL A 32 O ILE A 344 SHEET 9 AA210 MET A 67 ILE A 69 1 O MET A 67 N MET A 33 SHEET 10 AA210 PHE A 110 TRP A 116 1 O PHE A 110 N ILE A 68 SHEET 1 AA3 2 TYR A 134 CYS A 136 0 SHEET 2 AA3 2 GLU A 158 SER A 160 1 O HIS A 159 N TYR A 134 SHEET 1 AA4 2 ILE B 20 ILE B 22 0 SHEET 2 AA4 2 THR B 25 LEU B 27 -1 O LEU B 27 N ILE B 20 SHEET 1 AA5 8 ALA B 31 VAL B 32 0 SHEET 2 AA5 8 THR B 342 GLY B 345 1 O ILE B 344 N VAL B 32 SHEET 3 AA5 8 ILE B 320 ALA B 323 1 N ARG B 322 O LEU B 343 SHEET 4 AA5 8 PHE B 284 VAL B 288 1 N LEU B 287 O ILE B 321 SHEET 5 AA5 8 VAL B 240 LEU B 244 1 N LEU B 242 O HIS B 286 SHEET 6 AA5 8 GLY B 187 HIS B 191 1 N ILE B 190 O GLY B 241 SHEET 7 AA5 8 PHE B 110 TRP B 116 1 N LEU B 115 O GLU B 189 SHEET 8 AA5 8 MET B 67 PHE B 74 1 N THR B 70 O TRP B 112 SHEET 1 AA6 2 TYR B 134 CYS B 136 0 SHEET 2 AA6 2 GLU B 158 SER B 160 1 O HIS B 159 N TYR B 134 LINK OD1 ASN A 179 NA NA A 403 1555 1555 2.39 LINK NA NA A 403 OF' TOE A 404 1555 1555 2.18 LINK NA NA A 403 OI' TOE A 404 1555 1555 3.01 LINK NA NA A 403 O2' TOE A 404 1555 1555 2.82 LINK OD1 ASN B 179 NA NA B 403 1555 1555 2.47 LINK NA NA B 403 OF' TOE B 404 1555 1555 3.12 LINK NA NA B 403 OC' TOE B 404 1555 1555 3.18 LINK NA NA B 403 O2' TOE B 404 1555 1555 2.50 CISPEP 1 HIS A 43 PRO A 44 0 6.78 CISPEP 2 HIS B 43 PRO B 44 0 3.15 SITE 1 AC1 20 PRO A 35 LEU A 36 THR A 37 GLY A 72 SITE 2 AC1 20 GLN A 114 HIS A 191 ASN A 194 ARG A 243 SITE 3 AC1 20 GLY A 324 ASN A 325 GLY A 347 ARG A 348 SITE 4 AC1 20 PHE A 374 TYR A 375 HBA A 402 HOH A 502 SITE 5 AC1 20 HOH A 535 HOH A 536 HOH A 563 HOH A 655 SITE 1 AC2 6 THR A 37 HIS A 191 ASN A 194 TYR A 196 SITE 2 AC2 6 TYR A 375 FMN A 401 SITE 1 AC3 2 ASN A 179 TOE A 404 SITE 1 AC4 5 TRP A 89 ASP A 91 HIS A 175 ASN A 179 SITE 2 AC4 5 NA A 403 SITE 1 AC5 1 LYS A 98 SITE 1 AC6 19 PRO B 35 LEU B 36 THR B 37 GLY B 72 SITE 2 AC6 19 GLN B 114 HIS B 191 ASN B 194 ARG B 243 SITE 3 AC6 19 GLY B 324 ASN B 325 GLY B 347 ARG B 348 SITE 4 AC6 19 PHE B 374 TYR B 375 HBA B 402 HOH B 505 SITE 5 AC6 19 HOH B 530 HOH B 638 HOH B 651 SITE 1 AC7 7 THR B 37 TRP B 116 HIS B 191 ASN B 194 SITE 2 AC7 7 TYR B 196 TYR B 375 FMN B 401 SITE 1 AC8 2 ASN B 179 TOE B 404 SITE 1 AC9 6 GLU A 380 TRP B 89 ASP B 91 HIS B 175 SITE 2 AC9 6 ASN B 179 NA B 403 SITE 1 AD1 4 VAL B 94 ALA B 95 LYS B 98 ALA B 182 CRYST1 61.533 106.421 141.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007092 0.00000