data_5V5B # _entry.id 5V5B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V5B pdb_00005v5b 10.2210/pdb5v5b/pdb WWPDB D_1000226897 ? ? EMDB EMD-8634 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-07 2 'Structure model' 1 1 2018-02-14 3 'Structure model' 1 2 2018-06-06 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' software 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V5B _pdbx_database_status.recvd_initial_deposition_date 2017-03-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'KVQIINKKLD, Structure of the amyloid spine from microtubule associated protein tau Repeat 2' EMD-8634 'associated EM volume' EMDB 'VQIINK, Structure of the amyloid spine from microtubule associated protein tau Repeat 2' EMD-8635 'other EM volume' PDB . 5V5C unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Seidler, P.M.' 1 ? 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Rodriguez, J.A.' 3 ? 'Eisenberg, D.S.' 4 ? 'Cascio, D.' 5 0000-0002-3877-6803 'Boyer, D.R.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Chem' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1755-4349 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 170 _citation.page_last 176 _citation.title 'Structure-based inhibitors of tau aggregation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchem.2889 _citation.pdbx_database_id_PubMed 29359764 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seidler, P.M.' 1 ? primary 'Boyer, D.R.' 2 ? primary 'Rodriguez, J.A.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Cascio, D.' 5 ? primary 'Murray, K.' 6 ? primary 'Gonen, T.' 7 ? primary 'Eisenberg, D.S.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Microtubule-associated protein tau' 1201.478 1 ? ? 'Repeat 2 peptide (UNP residues 591-600)' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVQIINKKLD _entity_poly.pdbx_seq_one_letter_code_can KVQIINKKLD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLN n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 ASP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 274 274 LYS LYS A . n A 1 2 VAL 2 275 275 VAL VAL A . n A 1 3 GLN 3 276 276 GLN GLN A . n A 1 4 ILE 4 277 277 ILE ILE A . n A 1 5 ILE 5 278 278 ILE ILE A . n A 1 6 ASN 6 279 279 ASN ASN A . n A 1 7 LYS 7 280 280 LYS LYS A . n A 1 8 LYS 8 281 281 LYS LYS A . n A 1 9 LEU 9 282 282 LEU LEU A . n A 1 10 ASP 10 283 283 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 1 HOH HOH A . B 2 HOH 2 302 2 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 283 ? CG ? A ASP 10 CG 2 1 Y 1 A ASP 283 ? OD1 ? A ASP 10 OD1 3 1 Y 1 A ASP 283 ? OD2 ? A ASP 10 OD2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 2 ? refinement ? ? 'Gerard Bricogne' buster-develop@GlobalPhasing.com ? ? ? ? ? http://www.globalphasing.com/buster/ ? BUSTER ? ? program 2.10.0 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'July. 13, 2016' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 100.530 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5V5B _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.120 _cell.length_a_esd ? _cell.length_b 4.830 _cell.length_b_esd ? _cell.length_c 32.430 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V5B _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M phosphate citrate, 32% PEG10000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS TEMCAM-F416' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-25 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 8.370 _reflns.entry_id 5V5B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 18.830 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2203 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 84.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.133 _reflns.pdbx_Rmerge_I_obs 0.255 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.240 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.851 _reflns.pdbx_scaling_rejects 12 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.268 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 20119 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.984 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.500 1.560 ? 2.830 ? 1746 327 ? 281 85.900 ? ? ? ? 0.419 ? ? ? ? ? ? ? ? 6.214 ? ? ? ? 0.452 ? ? 1 1 0.849 ? 1.560 1.630 ? 3.730 ? 2062 299 ? 262 87.600 ? ? ? ? 0.311 ? ? ? ? ? ? ? ? 7.870 ? ? ? ? 0.330 ? ? 2 1 0.974 ? 1.630 1.710 ? 3.310 ? 1567 243 ? 200 82.300 ? ? ? ? 0.505 ? ? ? ? ? ? ? ? 7.835 ? ? ? ? 0.540 ? ? 3 1 0.728 ? 1.710 1.800 ? 3.170 ? 1578 229 ? 191 83.400 ? ? ? ? 0.515 ? ? ? ? ? ? ? ? 8.262 ? ? ? ? 0.550 ? ? 4 1 0.674 ? 1.800 1.910 ? 3.840 ? 1634 220 ? 183 83.200 ? ? ? ? 0.376 ? ? ? ? ? ? ? ? 8.929 ? ? ? ? 0.399 ? ? 5 1 0.929 ? 1.910 2.040 ? 5.890 ? 2034 232 ? 200 86.200 ? ? ? ? 0.306 ? ? ? ? ? ? ? ? 10.170 ? ? ? ? 0.321 ? ? 6 1 0.959 ? 2.040 2.210 ? 6.220 ? 2128 240 ? 196 81.700 ? ? ? ? 0.374 ? ? ? ? ? ? ? ? 10.857 ? ? ? ? 0.393 ? ? 7 1 0.884 ? 2.210 2.420 ? 7.560 ? 2413 228 ? 195 85.500 ? ? ? ? 0.255 ? ? ? ? ? ? ? ? 12.374 ? ? ? ? 0.266 ? ? 8 1 0.993 ? 2.420 2.700 ? 5.690 ? 1121 143 ? 120 83.900 ? ? ? ? 0.328 ? ? ? ? ? ? ? ? 9.342 ? ? ? ? 0.346 ? ? 9 1 0.961 ? 2.700 3.120 ? 6.390 ? 1114 137 ? 121 88.300 ? ? ? ? 0.286 ? ? ? ? ? ? ? ? 9.207 ? ? ? ? 0.303 ? ? 10 1 0.974 ? 3.120 3.820 ? 8.780 ? 1198 133 ? 120 90.200 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 9.983 ? ? ? ? 0.276 ? ? 11 1 0.905 ? 3.820 5.410 ? 11.240 ? 1275 121 ? 106 87.600 ? ? ? ? 0.186 ? ? ? ? ? ? ? ? 12.028 ? ? ? ? 0.193 ? ? 12 1 0.986 ? 5.410 18.830 ? 8.400 ? 249 45 ? 28 62.200 ? ? ? ? 0.166 ? ? ? ? ? ? ? ? 8.893 ? ? ? ? 0.177 ? ? 13 1 0.979 ? # _refine.aniso_B[1][1] -5.1394 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 3.5054 _refine.aniso_B[2][2] 4.6904 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.4491 _refine.B_iso_max 66.550 _refine.B_iso_mean 16.9200 _refine.B_iso_min 3.000 _refine.correlation_coeff_Fo_to_Fc 0.9379 _refine.correlation_coeff_Fo_to_Fc_free 0.9214 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5V5B _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 18.8300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1313 _refine.ls_number_reflns_R_free 132 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 82.3700 _refine.ls_percent_reflns_R_free 10.0500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1927 _refine.ls_R_factor_R_free 0.2127 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1904 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.0890 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.0930 _refine.pdbx_overall_SU_R_Blow_DPI 0.1000 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.1260 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5V5B _refine_analyze.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.214 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 18.8300 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 83 _refine_hist.pdbx_number_residues_total 10 _refine_hist.pdbx_B_iso_mean_solvent 28.48 _refine_hist.pdbx_number_atoms_protein 81 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 51 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 3 ? t_trig_c_planes 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 23 ? t_gen_planes 5.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 197 ? t_it 20.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_nbd ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_improper_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_pseud_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 13 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_sum_occupancies ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_distance ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 141 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 0.010 ? 197 ? t_bond_d 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 1.510 ? 370 ? t_angle_deg 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 4.310 ? ? ? t_omega_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 11.910 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.6800 _refine_ls_shell.number_reflns_all 370 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_R_work 333 _refine_ls_shell.percent_reflns_obs 82.3700 _refine_ls_shell.percent_reflns_R_free 10.0000 _refine_ls_shell.R_factor_all 0.1897 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2097 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1871 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5V5B _struct.title 'KVQIINKKLD, Structure of the amyloid spine from microtubule associated protein tau Repeat 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V5B _struct_keywords.text ;Amyloid, tau, Alzheimer's Disease, tauopathy, MAPT, STRUCTURAL PROTEIN ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KVQIINKKLD _struct_ref.pdbx_align_begin 591 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5V5B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10636 _struct_ref_seq.db_align_beg 591 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 600 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 274 _struct_ref_seq.pdbx_auth_seq_align_end 283 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? octadecameric 18 2 author_defined_assembly ? octadecameric 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B 1 11 A,B 1 12 A,B 1 13 A,B 1 14 A,B 1 15 A,B 1 16 A,B 1 17 A,B 1 18 A,B 2 1 A,B 2 2 A,B 2 3 A,B 2 4 A,B 2 5 A,B 2 6 A,B 2 7 A,B 2 8 A,B 2 9 A,B 2 19 A,B 2 20 A,B 2 21 A,B 2 22 A,B 2 23 A,B 2 24 A,B 2 25 A,B 2 26 A,B 2 27 A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_515 x,y-4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -19.3200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_525 x,y-3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -14.4900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.6600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8300000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8300000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 14.4900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19.3200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10 'crystal symmetry operation' 2_515 -x,y-7/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -16.9050000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 11 'crystal symmetry operation' 2_525 -x,y-5/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -12.0750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 12 'crystal symmetry operation' 2_535 -x,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -7.2450000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 13 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -2.4150000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 14 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2.4150000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 15 'crystal symmetry operation' 2_565 -x,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7.2450000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 16 'crystal symmetry operation' 2_575 -x,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 12.0750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 17 'crystal symmetry operation' 2_585 -x,y+7/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 16.9050000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 18 'crystal symmetry operation' 2_595 -x,y+9/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 21.7350000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 19 'crystal symmetry operation' 2_616 -x+1,y-7/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 -16.9050000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 20 'crystal symmetry operation' 2_626 -x+1,y-5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 -12.0750000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 21 'crystal symmetry operation' 2_636 -x+1,y-3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 -7.2450000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 22 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 -2.4150000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 23 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 2.4150000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 24 'crystal symmetry operation' 2_666 -x+1,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 7.2450000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 25 'crystal symmetry operation' 2_676 -x+1,y+5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 12.0750000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 26 'crystal symmetry operation' 2_686 -x+1,y+7/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 16.9050000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 27 'crystal symmetry operation' 2_696 -x+1,y+9/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.1934067477 0.0000000000 1.0000000000 0.0000000000 21.7350000000 0.0000000000 0.0000000000 -1.0000000000 31.8838578660 # _phasing.method MR # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 5V5B _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method ? _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 5V5B _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'KVQIINKKLD Tau peptide' _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5V5B _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 5V5B _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5V5B _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLN N N N N 34 GLN CA C N S 35 GLN C C N N 36 GLN O O N N 37 GLN CB C N N 38 GLN CG C N N 39 GLN CD C N N 40 GLN OE1 O N N 41 GLN NE2 N N N 42 GLN OXT O N N 43 GLN H H N N 44 GLN H2 H N N 45 GLN HA H N N 46 GLN HB2 H N N 47 GLN HB3 H N N 48 GLN HG2 H N N 49 GLN HG3 H N N 50 GLN HE21 H N N 51 GLN HE22 H N N 52 GLN HXT H N N 53 HOH O O N N 54 HOH H1 H N N 55 HOH H2 H N N 56 ILE N N N N 57 ILE CA C N S 58 ILE C C N N 59 ILE O O N N 60 ILE CB C N S 61 ILE CG1 C N N 62 ILE CG2 C N N 63 ILE CD1 C N N 64 ILE OXT O N N 65 ILE H H N N 66 ILE H2 H N N 67 ILE HA H N N 68 ILE HB H N N 69 ILE HG12 H N N 70 ILE HG13 H N N 71 ILE HG21 H N N 72 ILE HG22 H N N 73 ILE HG23 H N N 74 ILE HD11 H N N 75 ILE HD12 H N N 76 ILE HD13 H N N 77 ILE HXT H N N 78 LEU N N N N 79 LEU CA C N S 80 LEU C C N N 81 LEU O O N N 82 LEU CB C N N 83 LEU CG C N N 84 LEU CD1 C N N 85 LEU CD2 C N N 86 LEU OXT O N N 87 LEU H H N N 88 LEU H2 H N N 89 LEU HA H N N 90 LEU HB2 H N N 91 LEU HB3 H N N 92 LEU HG H N N 93 LEU HD11 H N N 94 LEU HD12 H N N 95 LEU HD13 H N N 96 LEU HD21 H N N 97 LEU HD22 H N N 98 LEU HD23 H N N 99 LEU HXT H N N 100 LYS N N N N 101 LYS CA C N S 102 LYS C C N N 103 LYS O O N N 104 LYS CB C N N 105 LYS CG C N N 106 LYS CD C N N 107 LYS CE C N N 108 LYS NZ N N N 109 LYS OXT O N N 110 LYS H H N N 111 LYS H2 H N N 112 LYS HA H N N 113 LYS HB2 H N N 114 LYS HB3 H N N 115 LYS HG2 H N N 116 LYS HG3 H N N 117 LYS HD2 H N N 118 LYS HD3 H N N 119 LYS HE2 H N N 120 LYS HE3 H N N 121 LYS HZ1 H N N 122 LYS HZ2 H N N 123 LYS HZ3 H N N 124 LYS HXT H N N 125 VAL N N N N 126 VAL CA C N S 127 VAL C C N N 128 VAL O O N N 129 VAL CB C N N 130 VAL CG1 C N N 131 VAL CG2 C N N 132 VAL OXT O N N 133 VAL H H N N 134 VAL H2 H N N 135 VAL HA H N N 136 VAL HB H N N 137 VAL HG11 H N N 138 VAL HG12 H N N 139 VAL HG13 H N N 140 VAL HG21 H N N 141 VAL HG22 H N N 142 VAL HG23 H N N 143 VAL HXT H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLN N CA sing N N 32 GLN N H sing N N 33 GLN N H2 sing N N 34 GLN CA C sing N N 35 GLN CA CB sing N N 36 GLN CA HA sing N N 37 GLN C O doub N N 38 GLN C OXT sing N N 39 GLN CB CG sing N N 40 GLN CB HB2 sing N N 41 GLN CB HB3 sing N N 42 GLN CG CD sing N N 43 GLN CG HG2 sing N N 44 GLN CG HG3 sing N N 45 GLN CD OE1 doub N N 46 GLN CD NE2 sing N N 47 GLN NE2 HE21 sing N N 48 GLN NE2 HE22 sing N N 49 GLN OXT HXT sing N N 50 HOH O H1 sing N N 51 HOH O H2 sing N N 52 ILE N CA sing N N 53 ILE N H sing N N 54 ILE N H2 sing N N 55 ILE CA C sing N N 56 ILE CA CB sing N N 57 ILE CA HA sing N N 58 ILE C O doub N N 59 ILE C OXT sing N N 60 ILE CB CG1 sing N N 61 ILE CB CG2 sing N N 62 ILE CB HB sing N N 63 ILE CG1 CD1 sing N N 64 ILE CG1 HG12 sing N N 65 ILE CG1 HG13 sing N N 66 ILE CG2 HG21 sing N N 67 ILE CG2 HG22 sing N N 68 ILE CG2 HG23 sing N N 69 ILE CD1 HD11 sing N N 70 ILE CD1 HD12 sing N N 71 ILE CD1 HD13 sing N N 72 ILE OXT HXT sing N N 73 LEU N CA sing N N 74 LEU N H sing N N 75 LEU N H2 sing N N 76 LEU CA C sing N N 77 LEU CA CB sing N N 78 LEU CA HA sing N N 79 LEU C O doub N N 80 LEU C OXT sing N N 81 LEU CB CG sing N N 82 LEU CB HB2 sing N N 83 LEU CB HB3 sing N N 84 LEU CG CD1 sing N N 85 LEU CG CD2 sing N N 86 LEU CG HG sing N N 87 LEU CD1 HD11 sing N N 88 LEU CD1 HD12 sing N N 89 LEU CD1 HD13 sing N N 90 LEU CD2 HD21 sing N N 91 LEU CD2 HD22 sing N N 92 LEU CD2 HD23 sing N N 93 LEU OXT HXT sing N N 94 LYS N CA sing N N 95 LYS N H sing N N 96 LYS N H2 sing N N 97 LYS CA C sing N N 98 LYS CA CB sing N N 99 LYS CA HA sing N N 100 LYS C O doub N N 101 LYS C OXT sing N N 102 LYS CB CG sing N N 103 LYS CB HB2 sing N N 104 LYS CB HB3 sing N N 105 LYS CG CD sing N N 106 LYS CG HG2 sing N N 107 LYS CG HG3 sing N N 108 LYS CD CE sing N N 109 LYS CD HD2 sing N N 110 LYS CD HD3 sing N N 111 LYS CE NZ sing N N 112 LYS CE HE2 sing N N 113 LYS CE HE3 sing N N 114 LYS NZ HZ1 sing N N 115 LYS NZ HZ2 sing N N 116 LYS NZ HZ3 sing N N 117 LYS OXT HXT sing N N 118 VAL N CA sing N N 119 VAL N H sing N N 120 VAL N H2 sing N N 121 VAL CA C sing N N 122 VAL CA CB sing N N 123 VAL CA HA sing N N 124 VAL C O doub N N 125 VAL C OXT sing N N 126 VAL CB CG1 sing N N 127 VAL CB CG2 sing N N 128 VAL CB HB sing N N 129 VAL CG1 HG11 sing N N 130 VAL CG1 HG12 sing N N 131 VAL CG1 HG13 sing N N 132 VAL CG2 HG21 sing N N 133 VAL CG2 HG22 sing N N 134 VAL CG2 HG23 sing N N 135 VAL OXT HXT sing N N 136 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 105.53 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 27.12 _em_3d_crystal_entity.length_b 4.83 _em_3d_crystal_entity.length_c 32.43 _em_3d_crystal_entity.space_group_name 'P 21' _em_3d_crystal_entity.space_group_num 4 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1850 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 82.4 _em_diffraction_shell.high_resolution 1.50 _em_diffraction_shell.low_resolution 1.68 _em_diffraction_shell.multiplicity 6.2 _em_diffraction_shell.num_structure_factors 370 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details 'This is a crystallography experiment.' _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 84.8 _em_diffraction_stats.high_resolution 1.5 _em_diffraction_stats.num_intensities_measured 20047 _em_diffraction_stats.num_structure_factors 2203 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 0.1 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 25 _em_diffraction_stats.r_sym 25 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.cell ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.1 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.84 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? BUSTER 2.10.0 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' '1R01 AG029430' 1 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 'RF1 AG054022' 2 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' '1F32 NS095661' 3 'BrightFocus Foundation' 'United States' A2016588F 4 # _atom_sites.entry_id 5V5B _atom_sites.fract_transf_matrix[1][1] 0.036873 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006854 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.207039 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031364 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_