HEADER STRUCTURAL PROTEIN 14-MAR-17 5V5C TITLE VQIINK, STRUCTURE OF THE AMYLOID-SPINE FROM MICROTUBULE ASSOCIATED TITLE 2 PROTEIN TAU REPEAT 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: REPEAT 2 PEPTIDE (UNP RESIDUES 592-597); COMPND 5 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN, PAIRED HELICAL FILAMENT-TAU, COMPND 6 PHF-TAU; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, TAU, ALZHEIMER'S DISEASE, TAUOPATHY, MAPT, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR P.M.SEIDLER,M.R.SAWAYA,J.A.RODRIGUEZ,D.S.EISENBERG,D.CASCIO,D.R.BOYER REVDAT 5 13-MAR-24 5V5C 1 REMARK REVDAT 4 18-DEC-19 5V5C 1 REMARK REVDAT 3 06-JUN-18 5V5C 1 REMARK REVDAT 2 14-FEB-18 5V5C 1 REMARK REVDAT 1 07-FEB-18 5V5C 0 JRNL AUTH P.M.SEIDLER,D.R.BOYER,J.A.RODRIGUEZ,M.R.SAWAYA,D.CASCIO, JRNL AUTH 2 K.MURRAY,T.GONEN,D.S.EISENBERG JRNL TITL STRUCTURE-BASED INHIBITORS OF TAU AGGREGATION. JRNL REF NAT CHEM V. 10 170 2018 JRNL REFN ESSN 1755-4349 JRNL PMID 29359764 JRNL DOI 10.1038/NCHEM.2889 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 1226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.280 REMARK 3 FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 277 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2458 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 248 REMARK 3 BIN R VALUE (WORKING SET) : 0.2456 REMARK 3 BIN FREE R VALUE : 0.2471 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.47 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 50 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35750 REMARK 3 B22 (A**2) : -4.88590 REMARK 3 B33 (A**2) : 4.52830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.067 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.074 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.072 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.070 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226898. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 25-AUG-16 REMARK 240 TEMPERATURE (KELVIN) : 100.0 REMARK 240 PH : 7.00 REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI 20 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1226 REMARK 240 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 240 RESOLUTION RANGE LOW (A) : 10.180 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 240 DATA REDUNDANCY : 4.449 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :1.25 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.31 REMARK 240 COMPLETENESS FOR SHELL (%) : 71.6 REMARK 240 DATA REDUNDANCY IN SHELL : 2.52 REMARK 240 R MERGE FOR SHELL (I) : 0.47500 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 240 SOFTWARE USED : PHASER REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 10.18000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 10.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -19.28000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -14.46000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -9.64000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -4.82000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 4.82000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 9.64000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 14.46000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 19.28000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 10 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 -19.28000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 -14.46000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 12 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 -9.64000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 13 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 13 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 13 0.000000 0.000000 -1.000000 -4.82000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 14 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 14 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 15 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 15 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 15 0.000000 0.000000 -1.000000 4.82000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 9.64000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 17 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 17 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 14.46000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 18 1.000000 0.000000 0.000000 10.18000 REMARK 350 BIOMT2 18 0.000000 -1.000000 0.000000 21.61000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 19.28000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8635 RELATED DB: EMDB REMARK 900 VQIINK, STRUCTURE OF THE AMYLOID-SPINE FROM MICROTUBULE ASSOCIATED REMARK 900 PROTEIN TAU REPEAT 2 REMARK 900 RELATED ID: EMD-8634 RELATED DB: EMDB REMARK 900 KVQIINKKLD, STRUCTURE OF THE AMYLOID-SPINE FROM MICROTUBULE REMARK 900 ASSOCIATED PROTEIN TAU REPEAT 2 REMARK 900 RELATED ID: 5V5B RELATED DB: PDB DBREF 5V5C A 275 280 PDB 5V5C 5V5C 275 280 SEQRES 1 A 6 VAL GLN ILE ILE ASN LYS CRYST1 20.360 43.220 4.820 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.049116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.207469 0.00000