HEADER CELL ADHESION 15-MAR-17 5V5W TITLE MOLECULAR MECHANISM OF MDGA1: REGULATION OF NEUROLIGIN 2:NEUREXIN TITLE 2 TRANS-SYNAPTIC BRIDGES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAM DOMAIN-CONTAINING GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GPI AND MAM PROTEIN,GPIM,GLYCOSYLPHOSPHATIDYLINOSITOL-MAM, COMPND 6 MAM DOMAIN-CONTAINING PROTEIN 3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDGA1, MAMDC3; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFASTBAC1-HM KEYWDS SYNAPTIC ORGANIZER, REGULATORY MOLECULE, MDGAS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,S.P.GANGWAR,G.RUDENKO REVDAT 4 04-OCT-23 5V5W 1 REMARK REVDAT 3 27-NOV-19 5V5W 1 REMARK REVDAT 2 27-SEP-17 5V5W 1 REMARK REVDAT 1 05-JUL-17 5V5W 0 JRNL AUTH S.P.GANGWAR,X.ZHONG,S.SESHADRINATHAN,H.CHEN,M.MACHIUS, JRNL AUTH 2 G.RUDENKO JRNL TITL MOLECULAR MECHANISM OF MDGA1: REGULATION OF NEUROLIGIN JRNL TITL 2 2:NEUREXIN TRANS-SYNAPTIC BRIDGES. JRNL REF NEURON V. 94 1132 2017 JRNL REFN ISSN 1097-4199 JRNL PMID 28641112 JRNL DOI 10.1016/J.NEURON.2017.06.009 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7810 - 4.3120 0.99 2948 165 0.1972 0.2334 REMARK 3 2 4.3120 - 3.4238 1.00 2877 151 0.2031 0.2491 REMARK 3 3 3.4238 - 2.9913 1.00 2875 136 0.2298 0.2695 REMARK 3 4 2.9913 - 2.7180 0.98 2830 145 0.2690 0.3312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1615 REMARK 3 ANGLE : 0.716 2193 REMARK 3 CHIRALITY : 0.049 249 REMARK 3 PLANARITY : 0.004 279 REMARK 3 DIHEDRAL : 10.298 983 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7771 -12.7715 45.0766 REMARK 3 T TENSOR REMARK 3 T11: 0.3946 T22: 0.2519 REMARK 3 T33: 0.3527 T12: 0.0152 REMARK 3 T13: 0.1285 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.3303 L22: 6.2204 REMARK 3 L33: 3.5370 L12: -0.9381 REMARK 3 L13: 0.6584 L23: 1.9335 REMARK 3 S TENSOR REMARK 3 S11: 0.2233 S12: 0.0152 S13: 0.5293 REMARK 3 S21: 0.3588 S22: -0.2008 S23: 0.2287 REMARK 3 S31: -0.4491 S32: -0.4105 S33: 0.1523 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7754 -4.6976 33.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.7173 T22: 0.6189 REMARK 3 T33: 0.8071 T12: 0.0831 REMARK 3 T13: 0.1386 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 7.6629 L22: 7.4356 REMARK 3 L33: 4.5102 L12: 7.5156 REMARK 3 L13: -5.2557 L23: -5.3954 REMARK 3 S TENSOR REMARK 3 S11: -0.9448 S12: -0.5366 S13: -0.7617 REMARK 3 S21: -1.2662 S22: 0.2237 S23: 0.1137 REMARK 3 S31: 0.9754 S32: 0.3600 S33: 0.6680 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4307 -12.4224 38.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.4031 T22: 0.1839 REMARK 3 T33: 0.3281 T12: 0.0159 REMARK 3 T13: 0.1201 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 2.9350 L22: 5.2395 REMARK 3 L33: 1.3391 L12: -2.1102 REMARK 3 L13: -0.3143 L23: 0.8630 REMARK 3 S TENSOR REMARK 3 S11: 0.3175 S12: 0.0517 S13: 0.4625 REMARK 3 S21: 0.2317 S22: -0.1942 S23: -0.4154 REMARK 3 S31: -0.4044 S32: -0.1524 S33: 0.1484 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3828 -43.9582 27.4954 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.3700 REMARK 3 T33: 0.4524 T12: 0.1150 REMARK 3 T13: -0.0443 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 3.0363 L22: 2.5078 REMARK 3 L33: 2.1574 L12: -0.2136 REMARK 3 L13: -0.9542 L23: 0.3632 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: -0.0704 S13: -0.2914 REMARK 3 S21: 0.2005 S22: 0.1783 S23: -0.7122 REMARK 3 S31: 0.5667 S32: 0.7280 S33: 0.2424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 32.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.94500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 3.72% (V/V) 2 REMARK 280 -PROPANOL, 25% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 69.53400 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 69.53400 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 69.53400 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 69.53400 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 69.53400 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 69.53400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 SER A 141 REMARK 465 ASP A 142 REMARK 465 VAL A 143 REMARK 465 ARG A 144 REMARK 465 GLY A 145 REMARK 465 ASN A 146 REMARK 465 PHE A 147 REMARK 465 TYR A 148 REMARK 465 GLN A 149 REMARK 465 GLU A 150 REMARK 465 HIS A 178 REMARK 465 SER A 179 REMARK 465 GLN A 180 REMARK 465 ASP A 181 REMARK 465 ASN A 235 REMARK 465 THR A 236 REMARK 465 THR A 237 REMARK 465 GLY A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 465 SER A 241 REMARK 465 THR A 242 REMARK 465 SER A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 -159.86 -144.25 REMARK 500 THR A 73 143.12 -171.24 REMARK 500 GLU A 91 -72.78 69.55 REMARK 500 ASP A 208 61.49 63.59 REMARK 500 TYR A 209 36.84 -142.07 REMARK 500 ALA A 210 -135.35 -123.87 REMARK 500 CYS A 222 12.80 55.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V5V RELATED DB: PDB DBREF 5V5W A 22 237 UNP Q8NFP4 MDGA1_HUMAN 22 237 SEQADV 5V5W VAL A 20 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W ASP A 21 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W GLY A 238 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W SER A 239 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W ALA A 240 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W SER A 241 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W THR A 242 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W SER A 243 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 244 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 245 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 246 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 247 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 248 UNP Q8NFP4 EXPRESSION TAG SEQADV 5V5W HIS A 249 UNP Q8NFP4 EXPRESSION TAG SEQRES 1 A 230 VAL ASP TYR ALA PRO ALA GLN ALA GLN ILE VAL HIS ALA SEQRES 2 A 230 GLY GLN ALA CYS VAL VAL LYS GLU ASP ASN ILE SER GLU SEQRES 3 A 230 ARG VAL TYR THR ILE ARG GLU GLY ASP THR LEU MET LEU SEQRES 4 A 230 GLN CYS LEU VAL THR GLY HIS PRO ARG PRO GLN VAL ARG SEQRES 5 A 230 TRP THR LYS THR ALA GLY SER ALA SER ASP LYS PHE GLN SEQRES 6 A 230 GLU THR SER VAL PHE ASN GLU THR LEU ARG ILE GLU ARG SEQRES 7 A 230 ILE ALA ARG THR GLN GLY GLY ARG TYR TYR CYS LYS ALA SEQRES 8 A 230 GLU ASN GLY VAL GLY VAL PRO ALA ILE LYS SER ILE ARG SEQRES 9 A 230 VAL ASP VAL GLN TYR LEU ASP GLU PRO MET LEU THR VAL SEQRES 10 A 230 HIS GLN THR VAL SER ASP VAL ARG GLY ASN PHE TYR GLN SEQRES 11 A 230 GLU LYS THR VAL PHE LEU ARG CYS THR VAL ASN SER ASN SEQRES 12 A 230 PRO PRO ALA ARG PHE ILE TRP LYS ARG GLY SER ASP THR SEQRES 13 A 230 LEU SER HIS SER GLN ASP ASN GLY VAL ASP ILE TYR GLU SEQRES 14 A 230 PRO LEU TYR THR GLN GLY GLU THR LYS VAL LEU LYS LEU SEQRES 15 A 230 LYS ASN LEU ARG PRO GLN ASP TYR ALA SER TYR THR CYS SEQRES 16 A 230 GLN VAL SER VAL ARG ASN VAL CYS GLY ILE PRO ASP LYS SEQRES 17 A 230 ALA ILE THR PHE ARG LEU THR ASN THR THR GLY SER ALA SEQRES 18 A 230 SER THR SER HIS HIS HIS HIS HIS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *9(H2 O) HELIX 1 AA1 SER A 80 GLN A 84 5 5 HELIX 2 AA2 ALA A 99 GLY A 103 5 5 HELIX 3 AA3 ASN A 220 ILE A 224 5 5 SHEET 1 AA1 3 ALA A 23 GLY A 33 0 SHEET 2 AA1 3 LEU A 56 HIS A 65 -1 O HIS A 65 N ALA A 23 SHEET 3 AA1 3 LEU A 93 ILE A 95 -1 O ILE A 95 N LEU A 56 SHEET 1 AA2 6 VAL A 37 GLU A 40 0 SHEET 2 AA2 6 GLU A 45 ARG A 51 -1 O ARG A 46 N LYS A 39 SHEET 3 AA2 6 ALA A 118 LEU A 129 1 O ARG A 123 N TYR A 48 SHEET 4 AA2 6 GLY A 104 GLU A 111 -1 N ALA A 110 O ALA A 118 SHEET 5 AA2 6 GLN A 69 LYS A 74 -1 N ARG A 71 O LYS A 109 SHEET 6 AA2 6 SER A 87 VAL A 88 -1 O SER A 87 N TRP A 72 SHEET 1 AA3 4 VAL A 37 GLU A 40 0 SHEET 2 AA3 4 GLU A 45 ARG A 51 -1 O ARG A 46 N LYS A 39 SHEET 3 AA3 4 ALA A 118 LEU A 129 1 O ARG A 123 N TYR A 48 SHEET 4 AA3 4 SER A 161 ASN A 162 -1 O ASN A 162 N TYR A 128 SHEET 1 AA4 4 MET A 133 THR A 139 0 SHEET 2 AA4 4 THR A 152 THR A 158 -1 O THR A 158 N MET A 133 SHEET 3 AA4 4 THR A 196 LEU A 201 -1 O LYS A 197 N CYS A 157 SHEET 4 AA4 4 VAL A 184 TYR A 187 -1 N TYR A 187 O VAL A 198 SHEET 1 AA5 3 ARG A 166 LYS A 170 0 SHEET 2 AA5 3 SER A 211 SER A 217 -1 O SER A 217 N ARG A 166 SHEET 3 AA5 3 LYS A 227 ARG A 232 -1 O PHE A 231 N TYR A 212 SSBOND 1 CYS A 36 CYS A 222 1555 1555 2.04 SSBOND 2 CYS A 60 CYS A 108 1555 1555 2.02 SSBOND 3 CYS A 157 CYS A 214 1555 1555 2.04 CISPEP 1 HIS A 65 PRO A 66 0 -0.69 CISPEP 2 ASN A 162 PRO A 163 0 1.97 SITE 1 AC1 3 ARG A 46 ARG A 123 ARG A 232 SITE 1 AC2 4 ARG A 71 TYR A 187 GLU A 188 LYS A 197 SITE 1 AC3 3 LYS A 39 SER A 211 ARG A 232 SITE 1 AC4 1 ARG A 97 CRYST1 139.068 139.068 139.068 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007191 0.00000