HEADER TRANSFERASE 15-MAR-17 5V60 TITLE PHOSPHO-ERK2 BOUND TO AMP-PCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 5 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 6 MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, MAPK, PHOSPHORYLATION, CANCER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.LECHTENBERG,S.J.RIEDL REVDAT 6 15-NOV-23 5V60 1 REMARK REVDAT 5 04-OCT-23 5V60 1 LINK REVDAT 4 04-DEC-19 5V60 1 REMARK REVDAT 3 18-APR-18 5V60 1 JRNL REVDAT 2 13-SEP-17 5V60 1 REMARK REVDAT 1 26-JUL-17 5V60 0 JRNL AUTH B.C.LECHTENBERG,P.D.MACE,E.H.SESSIONS,R.WILLIAMSON, JRNL AUTH 2 R.STALDER,Y.WALLEZ,G.P.ROTH,S.J.RIEDL,E.B.PASQUALE JRNL TITL STRUCTURE-GUIDED STRATEGY FOR THE DEVELOPMENT OF POTENT JRNL TITL 2 BIVALENT ERK INHIBITORS. JRNL REF ACS MED CHEM LETT V. 8 726 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 28740606 JRNL DOI 10.1021/ACSMEDCHEMLETT.7B00127 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 25169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3052 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2818 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4126 ; 1.339 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6545 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;38.061 ;24.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;12.516 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3291 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3379 17.5870 23.9478 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.0278 REMARK 3 T33: 0.0937 T12: 0.0082 REMARK 3 T13: 0.0025 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.2358 L22: 0.9660 REMARK 3 L33: 3.3391 L12: 0.0104 REMARK 3 L13: 0.1110 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.1534 S13: 0.0194 REMARK 3 S21: 0.2102 S22: 0.0144 S23: -0.0589 REMARK 3 S31: 0.0193 S32: 0.1543 S33: -0.0625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5V60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 28.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ERK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 45% V/V REMARK 280 POLYPROPYLENE GLYCOL P400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.87850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.28300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.25800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.28300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.87850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.25800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2G ACP A 401 O HOH A 501 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 36 31.11 -142.56 REMARK 500 ASP A 149 37.56 -151.89 REMARK 500 ASP A 167 75.29 60.56 REMARK 500 ALA A 189 168.41 66.70 REMARK 500 ASN A 201 61.02 -151.03 REMARK 500 LEU A 294 48.01 -92.43 REMARK 500 LEU A 294 48.01 -93.08 REMARK 500 ASP A 318 96.00 -160.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 154 OD1 REMARK 620 2 ASP A 167 OD2 85.7 REMARK 620 3 ACP A 401 O2G 139.8 60.8 REMARK 620 4 ACP A 401 O2A 98.7 89.9 102.6 REMARK 620 5 HOH A 501 O 106.2 89.0 55.7 155.0 REMARK 620 6 HOH A 550 O 91.2 172.4 124.6 83.7 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 167 OD2 56.0 REMARK 620 3 ACP A 401 O1G 163.0 127.3 REMARK 620 4 ACP A 401 O2G 112.0 57.2 70.3 REMARK 620 5 ACP A 401 O2B 88.9 96.9 74.3 87.5 REMARK 620 6 HOH A 508 O 104.8 160.5 71.9 142.2 84.8 REMARK 620 7 HOH A 552 O 82.3 81.2 114.3 99.1 170.6 94.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V61 RELATED DB: PDB REMARK 900 RELATED ID: 5V62 RELATED DB: PDB DBREF 5V60 A 8 360 UNP P28482 MK01_HUMAN 8 360 SEQADV 5V60 GLY A 5 UNP P28482 EXPRESSION TAG SEQADV 5V60 PRO A 6 UNP P28482 EXPRESSION TAG SEQADV 5V60 GLY A 7 UNP P28482 EXPRESSION TAG SEQRES 1 A 356 GLY PRO GLY GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 2 A 356 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 3 A 356 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 4 A 356 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 5 A 356 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 6 A 356 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 7 A 356 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 8 A 356 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 9 A 356 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 10 A 356 SER ASN ASP HIS ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 11 A 356 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 12 A 356 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 13 A 356 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 14 A 356 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU TPO GLU SEQRES 15 A 356 PTR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 16 A 356 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 17 A 356 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 18 A 356 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 19 A 356 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 20 A 356 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 21 A 356 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 22 A 356 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 23 A 356 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 24 A 356 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 25 A 356 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 26 A 356 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 27 A 356 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 28 A 356 PRO GLY TYR ARG SER MODRES 5V60 TPO A 185 THR MODIFIED RESIDUE MODRES 5V60 PTR A 187 TYR MODIFIED RESIDUE HET TPO A 185 11 HET PTR A 187 16 HET ACP A 401 31 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET MG A 408 1 HET MG A 409 1 HETNAM TPO PHOSPHOTHREONINE HETNAM PTR O-PHOSPHOTYROSINE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN PTR PHOSPHONOTYROSINE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 MG 2(MG 2+) FORMUL 11 HOH *82(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 THR A 190 ARG A 194 5 5 HELIX 6 AA6 ALA A 195 ASN A 201 1 7 HELIX 7 AA7 LYS A 207 ASN A 224 1 18 HELIX 8 AA8 HIS A 232 GLY A 245 1 14 HELIX 9 AA9 SER A 248 CYS A 254 1 7 HELIX 10 AB1 ASN A 257 SER A 266 1 10 HELIX 11 AB2 PRO A 274 PHE A 279 1 6 HELIX 12 AB3 ASP A 283 LEU A 294 1 12 HELIX 13 AB4 GLU A 303 ALA A 309 1 7 HELIX 14 AB5 HIS A 310 GLU A 314 5 5 HELIX 15 AB6 ASP A 318 GLU A 322 5 5 HELIX 16 AB7 LYS A 330 LEU A 335 5 6 HELIX 17 AB8 PRO A 339 THR A 351 1 13 HELIX 18 AB9 ALA A 352 GLN A 355 5 4 SHEET 1 AA1 2 MET A 13 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 AA2 5 TYR A 25 GLY A 34 0 SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O VAL A 39 N GLY A 32 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK C LEU A 184 N TPO A 185 1555 1555 1.33 LINK C TPO A 185 N GLU A 186 1555 1555 1.33 LINK C GLU A 186 N PTR A 187 1555 1555 1.33 LINK C PTR A 187 N VAL A 188 1555 1555 1.33 LINK OD1 ASN A 154 MG MG A 408 1555 1555 2.22 LINK OD2 ASP A 167 MG MG A 408 1555 1555 2.17 LINK OD1 ASP A 167 MG MG A 409 1555 1555 2.21 LINK OD2 ASP A 167 MG MG A 409 1555 1555 2.42 LINK O2G ACP A 401 MG MG A 408 1555 1555 2.22 LINK O2A ACP A 401 MG MG A 408 1555 1555 2.19 LINK O1G ACP A 401 MG MG A 409 1555 1555 2.20 LINK O2G ACP A 401 MG MG A 409 1555 1555 2.20 LINK O2B ACP A 401 MG MG A 409 1555 1555 2.17 LINK MG MG A 408 O HOH A 501 1555 1555 2.19 LINK MG MG A 408 O HOH A 550 1555 1555 2.18 LINK MG MG A 409 O HOH A 508 1555 1555 2.18 LINK MG MG A 409 O HOH A 552 1555 1555 2.19 CISPEP 1 GLY A 22 PRO A 23 0 1.47 SITE 1 AC1 23 ILE A 31 GLU A 33 GLY A 34 VAL A 39 SITE 2 AC1 23 ALA A 52 LYS A 54 ASP A 106 MET A 108 SITE 3 AC1 23 ASP A 111 LYS A 114 SER A 153 ASN A 154 SITE 4 AC1 23 LEU A 156 ASP A 167 MG A 408 MG A 409 SITE 5 AC1 23 HOH A 501 HOH A 505 HOH A 508 HOH A 527 SITE 6 AC1 23 HOH A 544 HOH A 550 HOH A 569 SITE 1 AC2 3 ASN A 158 THR A 159 CYS A 161 SITE 1 AC3 2 LEU A 234 TYR A 263 SITE 1 AC4 1 HIS A 120 SITE 1 AC5 4 GLU A 81 TYR A 128 ASP A 321 HOH A 513 SITE 1 AC6 5 ASN A 154 ASP A 167 ACP A 401 HOH A 501 SITE 2 AC6 5 HOH A 550 SITE 1 AC7 4 ASP A 167 ACP A 401 HOH A 508 HOH A 552 CRYST1 41.757 78.516 152.566 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006555 0.00000