HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAR-17 5V6V TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE AZIRIDINE 3 COVALENTLY BOUND TO K- TITLE 2 RAS G12C COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS K-RAS G12C, COVALENT INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.M.MCGREGOR,M.JENKINS,C.KERWIN,J.E.BURKE,K.M.SHOKAT REVDAT 5 23-OCT-24 5V6V 1 LINK REVDAT 4 20-NOV-19 5V6V 1 REMARK REVDAT 3 20-SEP-17 5V6V 1 REMARK REVDAT 2 05-JUL-17 5V6V 1 JRNL REVDAT 1 28-JUN-17 5V6V 0 JRNL AUTH L.M.MCGREGOR,M.L.JENKINS,C.KERWIN,J.E.BURKE,K.M.SHOKAT JRNL TITL EXPANDING THE SCOPE OF ELECTROPHILES CAPABLE OF TARGETING JRNL TITL 2 K-RAS ONCOGENES. JRNL REF BIOCHEMISTRY V. 56 3178 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28621541 JRNL DOI 10.1021/ACS.BIOCHEM.7B00271 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 30189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4403 - 3.8240 0.98 2653 150 0.1615 0.1926 REMARK 3 2 3.8240 - 3.0357 0.96 2616 144 0.1611 0.1776 REMARK 3 3 3.0357 - 2.6521 0.97 2631 157 0.1677 0.1891 REMARK 3 4 2.6521 - 2.4096 0.96 2598 148 0.1606 0.1973 REMARK 3 5 2.4096 - 2.2369 0.96 2604 138 0.1516 0.1763 REMARK 3 6 2.2369 - 2.1051 0.96 2626 133 0.1588 0.2336 REMARK 3 7 2.1051 - 1.9997 0.95 2606 125 0.1661 0.2036 REMARK 3 8 1.9997 - 1.9126 0.95 2614 138 0.1768 0.2453 REMARK 3 9 1.9126 - 1.8390 0.95 2553 116 0.1972 0.2483 REMARK 3 10 1.8390 - 1.7755 0.95 2597 144 0.2177 0.2536 REMARK 3 11 1.7755 - 1.7200 0.94 2551 147 0.2370 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2881 REMARK 3 ANGLE : 0.975 3880 REMARK 3 CHIRALITY : 0.052 424 REMARK 3 PLANARITY : 0.006 488 REMARK 3 DIHEDRAL : 13.029 1683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 60.493 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4000, 0.1M TRIS PH 8, 0.2M REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP, 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 12 H262 8YA B 207 1.14 REMARK 500 O HOH A 331 O HOH A 435 1.87 REMARK 500 O HOH A 334 O HOH A 347 2.00 REMARK 500 O HOH A 434 O HOH A 437 2.02 REMARK 500 O HOH A 432 O HOH A 437 2.10 REMARK 500 O HOH A 306 O HOH A 342 2.11 REMARK 500 O HOH A 327 O HOH A 388 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 334 O HOH B 316 1556 1.91 REMARK 500 OE1 GLU A 3 NZ LYS B 147 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 111.62 -39.39 REMARK 500 SER A 122 41.23 -96.32 REMARK 500 LYS B 117 36.85 70.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 87.7 REMARK 620 3 HOH A 319 O 78.5 89.1 REMARK 620 4 HOH A 340 O 88.4 168.3 101.0 REMARK 620 5 HOH A 348 O 90.9 87.8 169.1 81.2 REMARK 620 6 HOH A 430 O 170.9 96.4 93.4 89.1 97.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 GLU A 63 OE2 54.0 REMARK 620 3 GLY A 138 O 48.6 5.7 REMARK 620 4 HOH A 318 O 53.0 3.9 4.9 REMARK 620 5 HOH A 380 O 50.4 10.0 7.6 6.1 REMARK 620 6 HOH A 397 O 46.1 10.4 5.6 7.6 4.8 REMARK 620 7 HOH A 443 O 51.3 6.7 5.2 3.0 3.2 5.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 350 O REMARK 620 2 HOH A 388 O 67.9 REMARK 620 3 ASP B 108 OD1 18.5 86.4 REMARK 620 4 HOH B 400 O 125.1 60.1 142.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 3 O REMARK 620 2 GLU B 76 OE1 93.3 REMARK 620 3 GLU B 76 OE2 117.8 53.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 202 O1B 89.2 REMARK 620 3 HOH B 318 O 81.4 92.0 REMARK 620 4 HOH B 319 O 175.7 87.0 96.7 REMARK 620 5 HOH B 326 O 87.2 170.6 96.0 96.9 REMARK 620 6 HOH B 327 O 91.1 86.6 172.4 90.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 63 OE1 REMARK 620 2 GLU B 63 OE2 52.8 REMARK 620 3 GLY B 138 O 45.2 12.7 REMARK 620 4 HOH B 310 O 49.2 13.8 4.8 REMARK 620 5 HOH B 358 O 42.3 17.7 5.0 7.1 REMARK 620 6 HOH B 401 O 47.8 16.2 5.4 2.6 5.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8YA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8YA B 207 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V6S RELATED DB: PDB DBREF 5V6V A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 5V6V B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 5V6V GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 5V6V CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 5V6V SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 5V6V LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 5V6V SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 5V6V GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 5V6V CYS B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 5V6V SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 5V6V LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 5V6V SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS HET GDP A 201 39 HET CA A 202 1 HET CA A 203 1 HET 8YA A 204 55 HET CA B 201 1 HET GDP B 202 39 HET CA B 203 1 HET CA B 204 1 HET CA B 205 1 HET GOL B 206 14 HET 8YA B 207 55 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM 8YA 3-AMINO-1-{4-[6-CHLORO-8-FLUORO-7-(5-METHYL-1H-INDAZOL- HETNAM 2 8YA 4-YL)QUINAZOLIN-4-YL]PIPERAZIN-1-YL}PROPAN-1-ONE HETNAM GOL GLYCEROL HETSYN 8YA KRAS(G12C) INHIBITOR, AZIRIDINE FORM, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 CA 6(CA 2+) FORMUL 6 8YA 2(C23 H23 CL F N7 O) FORMUL 12 GOL C3 H8 O3 FORMUL 14 HOH *282(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 LYS A 104 1 19 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 LYS A 167 1 17 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 SER B 65 ARG B 73 1 9 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 ASP B 105 1 14 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 GLU B 3 GLY B 10 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG CYS A 12 C26 8YA A 204 1555 1555 1.76 LINK SG CYS B 12 C26 8YA B 207 1555 1555 1.76 LINK OG SER A 17 CA CA A 202 1555 1555 2.36 LINK OE1 GLU A 63 CA CA A 203 1555 1455 2.43 LINK OE2 GLU A 63 CA CA A 203 1555 1455 2.40 LINK O GLY A 138 CA CA A 203 1555 1555 2.22 LINK O2B GDP A 201 CA CA A 202 1555 1555 2.28 LINK CA CA A 202 O HOH A 319 1555 1555 2.39 LINK CA CA A 202 O HOH A 340 1555 1555 2.37 LINK CA CA A 202 O HOH A 348 1555 1555 2.38 LINK CA CA A 202 O HOH A 430 1555 1555 2.33 LINK CA CA A 203 O HOH A 318 1555 1555 2.36 LINK CA CA A 203 O HOH A 380 1555 1555 2.30 LINK CA CA A 203 O HOH A 397 1555 1555 2.53 LINK CA CA A 203 O HOH A 443 1555 1555 2.33 LINK O HOH A 350 CA CA B 201 1555 1555 2.42 LINK O HOH A 388 CA CA B 201 1555 1555 2.46 LINK O GLU B 3 CA CA B 205 1555 1555 2.31 LINK OG SER B 17 CA CA B 203 1555 1555 2.34 LINK OE1 GLU B 63 CA CA B 204 1555 1655 2.46 LINK OE2 GLU B 63 CA CA B 204 1555 1655 2.45 LINK OE1 GLU B 76 CA CA B 205 1555 1555 2.39 LINK OE2 GLU B 76 CA CA B 205 1555 1555 2.45 LINK OD1 ASP B 108 CA CA B 201 1555 1455 2.65 LINK O GLY B 138 CA CA B 204 1555 1555 2.30 LINK CA CA B 201 O HOH B 400 1555 1655 2.50 LINK O1B GDP B 202 CA CA B 203 1555 1555 2.24 LINK CA CA B 203 O HOH B 318 1555 1555 2.44 LINK CA CA B 203 O HOH B 319 1555 1555 2.31 LINK CA CA B 203 O HOH B 326 1555 1555 2.45 LINK CA CA B 203 O HOH B 327 1555 1555 2.47 LINK CA CA B 204 O HOH B 310 1555 1455 2.39 LINK CA CA B 204 O HOH B 358 1555 1555 2.48 LINK CA CA B 204 O HOH B 401 1555 1555 2.43 SITE 1 AC1 26 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 26 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 26 ASP A 30 GLU A 31 ARG A 73 ASN A 116 SITE 4 AC1 26 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 5 AC1 26 ALA A 146 LYS A 147 CA A 202 HOH A 303 SITE 6 AC1 26 HOH A 312 HOH A 314 HOH A 328 HOH A 348 SITE 7 AC1 26 HOH A 353 HOH A 370 SITE 1 AC2 6 SER A 17 GDP A 201 HOH A 319 HOH A 340 SITE 2 AC2 6 HOH A 348 HOH A 430 SITE 1 AC3 6 GLU A 63 GLY A 138 HOH A 318 HOH A 380 SITE 2 AC3 6 HOH A 397 HOH A 443 SITE 1 AC4 12 CYS A 12 ALA A 59 GLY A 60 TYR A 64 SITE 2 AC4 12 ARG A 68 ASP A 69 MET A 72 HIS A 95 SITE 3 AC4 12 TYR A 96 GLN A 99 VAL A 103 HOH A 320 SITE 1 AC5 4 HOH A 350 HOH A 388 ASP B 108 HOH B 400 SITE 1 AC6 24 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC6 24 SER B 17 ALA B 18 PHE B 28 VAL B 29 SITE 3 AC6 24 ASP B 30 ASN B 116 LYS B 117 ASP B 119 SITE 4 AC6 24 LEU B 120 SER B 145 ALA B 146 LYS B 147 SITE 5 AC6 24 CA B 203 HOH B 319 HOH B 327 HOH B 329 SITE 6 AC6 24 HOH B 338 HOH B 366 HOH B 372 HOH B 377 SITE 1 AC7 6 SER B 17 GDP B 202 HOH B 318 HOH B 319 SITE 2 AC7 6 HOH B 326 HOH B 327 SITE 1 AC8 5 GLU B 63 GLY B 138 HOH B 310 HOH B 358 SITE 2 AC8 5 HOH B 401 SITE 1 AC9 2 GLU B 3 GLU B 76 SITE 1 AD1 7 ILE A 21 GLN A 25 HIS A 27 TYR A 32 SITE 2 AD1 7 TYR A 40 GLN B 25 HOH B 379 SITE 1 AD2 12 ALA B 11 GLY B 13 VAL B 14 ALA B 59 SITE 2 AD2 12 GLY B 60 GLN B 61 TYR B 64 ARG B 68 SITE 3 AD2 12 ASP B 69 MET B 72 TYR B 96 GLN B 99 CRYST1 33.230 39.170 62.340 77.34 81.44 76.86 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030093 -0.007025 -0.003238 0.00000 SCALE2 0.000000 0.026216 -0.005142 0.00000 SCALE3 0.000000 0.000000 0.016531 0.00000 CONECT 161 5339 CONECT 223 5333 CONECT 2152 5334 CONECT 2663 5432 CONECT 2807 5451 CONECT 2869 5430 CONECT 3789 5432 CONECT 3790 5432 CONECT 4785 5431 CONECT 5294 5295 5296 5297 5298 CONECT 5295 5294 CONECT 5296 5294 5333 CONECT 5297 5294 CONECT 5298 5294 5299 CONECT 5299 5298 5300 5301 5302 CONECT 5300 5299 CONECT 5301 5299 CONECT 5302 5299 5303 CONECT 5303 5302 5304 5322 5323 CONECT 5304 5303 5305 5306 5324 CONECT 5305 5304 5310 CONECT 5306 5304 5307 5308 5325 CONECT 5307 5306 CONECT 5308 5306 5309 5310 5326 CONECT 5309 5308 5327 CONECT 5310 5305 5308 5311 5328 CONECT 5311 5310 5312 5321 CONECT 5312 5311 5313 5329 CONECT 5313 5312 5314 CONECT 5314 5313 5315 5321 CONECT 5315 5314 5316 5317 CONECT 5316 5315 CONECT 5317 5315 5318 5330 CONECT 5318 5317 5319 5320 CONECT 5319 5318 5331 5332 CONECT 5320 5318 5321 CONECT 5321 5311 5314 5320 CONECT 5322 5303 CONECT 5323 5303 CONECT 5324 5304 CONECT 5325 5306 CONECT 5326 5308 CONECT 5327 5309 CONECT 5328 5310 CONECT 5329 5312 CONECT 5330 5317 CONECT 5331 5319 CONECT 5332 5319 CONECT 5333 223 5296 5520 5541 CONECT 5333 5549 5631 CONECT 5334 2152 5519 5581 5598 CONECT 5334 5644 CONECT 5335 5348 5349 5368 CONECT 5336 5350 5369 5370 5371 CONECT 5337 5356 5357 5366 CONECT 5338 5357 5358 5372 5373 CONECT 5339 161 5360 5361 5374 CONECT 5340 5341 CONECT 5341 5340 5342 5367 CONECT 5342 5341 5343 5351 CONECT 5343 5342 5344 5350 CONECT 5344 5343 5345 5348 CONECT 5345 5344 5346 5375 CONECT 5346 5345 5347 CONECT 5347 5346 5348 5376 CONECT 5348 5335 5344 5347 CONECT 5349 5335 5350 5377 CONECT 5350 5336 5343 5349 CONECT 5351 5342 5352 5353 CONECT 5352 5351 CONECT 5353 5351 5354 5366 CONECT 5354 5353 5355 CONECT 5355 5354 5356 5378 CONECT 5356 5337 5355 CONECT 5357 5337 5338 5365 CONECT 5358 5338 5359 5379 5380 CONECT 5359 5358 5360 5364 CONECT 5360 5339 5359 5363 CONECT 5361 5339 5362 5381 5382 CONECT 5362 5361 5383 5384 CONECT 5363 5360 CONECT 5364 5359 5365 5385 5386 CONECT 5365 5357 5364 5387 5388 CONECT 5366 5337 5353 5367 CONECT 5367 5341 5366 5389 CONECT 5368 5335 CONECT 5369 5336 CONECT 5370 5336 CONECT 5371 5336 CONECT 5372 5338 CONECT 5373 5338 CONECT 5374 5339 CONECT 5375 5345 CONECT 5376 5347 CONECT 5377 5349 CONECT 5378 5355 CONECT 5379 5358 CONECT 5380 5358 CONECT 5381 5361 CONECT 5382 5361 CONECT 5383 5362 CONECT 5384 5362 CONECT 5385 5364 CONECT 5386 5364 CONECT 5387 5365 CONECT 5388 5365 CONECT 5389 5367 CONECT 5390 5551 5589 CONECT 5391 5392 5393 5394 5395 CONECT 5392 5391 5430 CONECT 5393 5391 CONECT 5394 5391 CONECT 5395 5391 5396 CONECT 5396 5395 5397 5398 5399 CONECT 5397 5396 CONECT 5398 5396 CONECT 5399 5396 5400 CONECT 5400 5399 5401 5419 5420 CONECT 5401 5400 5402 5403 5421 CONECT 5402 5401 5407 CONECT 5403 5401 5404 5405 5422 CONECT 5404 5403 CONECT 5405 5403 5406 5407 5423 CONECT 5406 5405 5424 CONECT 5407 5402 5405 5408 5425 CONECT 5408 5407 5409 5418 CONECT 5409 5408 5410 5426 CONECT 5410 5409 5411 CONECT 5411 5410 5412 5418 CONECT 5412 5411 5413 5414 CONECT 5413 5412 CONECT 5414 5412 5415 5427 CONECT 5415 5414 5416 5417 CONECT 5416 5415 5428 5429 CONECT 5417 5415 5418 CONECT 5418 5408 5411 5417 CONECT 5419 5400 CONECT 5420 5400 CONECT 5421 5401 CONECT 5422 5403 CONECT 5423 5405 CONECT 5424 5406 CONECT 5425 5407 CONECT 5426 5409 CONECT 5427 5414 CONECT 5428 5416 CONECT 5429 5416 CONECT 5430 2869 5392 5683 5684 CONECT 5430 5691 5692 CONECT 5431 4785 5723 5766 CONECT 5432 2663 3789 3790 CONECT 5433 5434 5435 5439 5440 CONECT 5434 5433 5441 CONECT 5435 5433 5436 5437 5442 CONECT 5436 5435 5443 CONECT 5437 5435 5438 5444 5445 CONECT 5438 5437 5446 CONECT 5439 5433 CONECT 5440 5433 CONECT 5441 5434 CONECT 5442 5435 CONECT 5443 5436 CONECT 5444 5437 CONECT 5445 5437 CONECT 5446 5438 CONECT 5447 5460 5461 5480 CONECT 5448 5462 5481 5482 5483 CONECT 5449 5468 5469 5478 CONECT 5450 5469 5470 5484 5485 CONECT 5451 2807 5472 5473 5486 CONECT 5452 5453 CONECT 5453 5452 5454 5479 CONECT 5454 5453 5455 5463 CONECT 5455 5454 5456 5462 CONECT 5456 5455 5457 5460 CONECT 5457 5456 5458 5487 CONECT 5458 5457 5459 CONECT 5459 5458 5460 5488 CONECT 5460 5447 5456 5459 CONECT 5461 5447 5462 5489 CONECT 5462 5448 5455 5461 CONECT 5463 5454 5464 5465 CONECT 5464 5463 CONECT 5465 5463 5466 5478 CONECT 5466 5465 5467 CONECT 5467 5466 5468 5490 CONECT 5468 5449 5467 CONECT 5469 5449 5450 5477 CONECT 5470 5450 5471 5491 5492 CONECT 5471 5470 5472 5476 CONECT 5472 5451 5471 5475 CONECT 5473 5451 5474 5493 5494 CONECT 5474 5473 5495 5496 CONECT 5475 5472 CONECT 5476 5471 5477 5497 5498 CONECT 5477 5469 5476 5499 5500 CONECT 5478 5449 5465 5479 CONECT 5479 5453 5478 5501 CONECT 5480 5447 CONECT 5481 5448 CONECT 5482 5448 CONECT 5483 5448 CONECT 5484 5450 CONECT 5485 5450 CONECT 5486 5451 CONECT 5487 5457 CONECT 5488 5459 CONECT 5489 5461 CONECT 5490 5467 CONECT 5491 5470 CONECT 5492 5470 CONECT 5493 5473 CONECT 5494 5473 CONECT 5495 5474 CONECT 5496 5474 CONECT 5497 5476 CONECT 5498 5476 CONECT 5499 5477 CONECT 5500 5477 CONECT 5501 5479 CONECT 5519 5334 CONECT 5520 5333 CONECT 5541 5333 CONECT 5549 5333 CONECT 5551 5390 CONECT 5581 5334 CONECT 5589 5390 CONECT 5598 5334 CONECT 5631 5333 CONECT 5644 5334 CONECT 5683 5430 CONECT 5684 5430 CONECT 5691 5430 CONECT 5692 5430 CONECT 5723 5431 CONECT 5766 5431 MASTER 383 0 11 11 12 0 31 6 3071 2 236 28 END