data_5V7Z # _entry.id 5V7Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.307 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5V7Z WWPDB D_1000220420 BMRB 30273 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'SSNMR Structure of the Human RIP1/RIP3 Necrosome' _pdbx_database_related.db_id 30273 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5V7Z _pdbx_database_status.recvd_initial_deposition_date 2017-03-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mompean, M.' 1 ? 'Li, W.' 2 ? 'Li, J.' 3 ? 'Laage, S.' 4 ? 'Siemer, A.B.' 5 ? 'Wu, H.' 6 ? 'McDermott, A.E.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 173 _citation.language ? _citation.page_first 1244 _citation.page_last 1253.e10 _citation.title 'The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2018.03.032 _citation.pdbx_database_id_PubMed 29681455 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mompean, M.' 1 ? primary 'Li, W.' 2 ? primary 'Li, J.' 3 ? primary 'Laage, S.' 4 ? primary 'Siemer, A.B.' 5 ? primary 'Bozkurt, G.' 6 ? primary 'Wu, H.' 7 ? primary 'McDermott, A.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PRO-LEU-VAL-ASN-ILE-TYR-ASN-CYS-SER-GLY-VAL-GLN-VAL-GLY-ASP 1577.758 4 ? ? ? ? 2 polymer man THR-ILE-TYR-ASN-SER-THR-GLY-ILE-GLN-ILE-GLY-ALA-TYR-ASN-TYR-MET-GLU-ILE 2051.279 4 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no PLVNIYNCSGVQVGD PLVNIYNCSGVQVGD A,C,E,G ? 2 'polypeptide(L)' no no TIYNSTGIQIGAYNYMEI TIYNSTGIQIGAYNYMEI B,D,F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 VAL n 1 4 ASN n 1 5 ILE n 1 6 TYR n 1 7 ASN n 1 8 CYS n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 GLN n 1 13 VAL n 1 14 GLY n 1 15 ASP n 2 1 THR n 2 2 ILE n 2 3 TYR n 2 4 ASN n 2 5 SER n 2 6 THR n 2 7 GLY n 2 8 ILE n 2 9 GLN n 2 10 ILE n 2 11 GLY n 2 12 ALA n 2 13 TYR n 2 14 ASN n 2 15 TYR n 2 16 MET n 2 17 GLU n 2 18 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 15 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 18 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5V7Z 5V7Z ? 1 ? 1 2 PDB 5V7Z 5V7Z ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5V7Z A 1 ? 15 ? 5V7Z 448 ? 462 ? 448 462 2 2 5V7Z B 1 ? 18 ? 5V7Z 532 ? 549 ? 532 549 3 1 5V7Z C 1 ? 15 ? 5V7Z 448 ? 462 ? 448 462 4 2 5V7Z D 1 ? 18 ? 5V7Z 532 ? 549 ? 532 549 5 1 5V7Z E 1 ? 15 ? 5V7Z 448 ? 462 ? 448 462 6 2 5V7Z F 1 ? 18 ? 5V7Z 532 ? 549 ? 532 549 7 1 5V7Z G 1 ? 15 ? 5V7Z 448 ? 462 ? 448 462 8 2 5V7Z H 1 ? 18 ? 5V7Z 532 ? 549 ? 532 549 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 'DARR 250 MS' 1 isotropic 2 1 2 'DARR 250 MS' 1 isotropic 3 1 3 'DARR 250 MS' 1 isotropic 4 1 1 'CHHC 500 US' 2 isotropic 5 1 3 'CHHC 500 US' 2 isotropic 6 1 2 'PAR 15 MS' 2 isotropic 7 1 3 'PAR 15 MS' 2 isotropic 8 1 2 'PAIN 6 MS' 2 isotropic 9 1 3 'PAIN 6 MS' 2 isotropic 10 1 1 'TEDOR 8 MS' 2 isotropic 11 1 2 'TEDOR 8 MS' 2 isotropic 12 1 3 'TEDOR 8 MS' 2 isotropic 13 1 1 NCOCX 2 isotropic 14 1 1 NCOCA 2 isotropic 15 1 1 NCACX 2 isotropic 16 1 1 NCA 2 isotropic 17 1 1 'DARR 50 MS' 1 isotropic 18 1 2 'DARR 50 MS' 1 isotropic 19 1 3 'DARR 50 MS' 1 isotropic 20 1 1 'DARR 20 MS' 1 isotropic 21 1 2 'DARR 20 MS' 1 isotropic 22 1 3 'DARR 20 MS' 1 isotropic 23 1 1 'DARR 100 MS' 1 isotropic 24 1 2 'DARR 100 MS' 1 isotropic 25 1 3 'DARR 100 MS' 1 isotropic 26 1 1 'DARR 500 MS' 1 isotropic 27 1 2 'DARR 500 MS' 1 isotropic 28 1 3 'DARR 500 MS' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label CONDITIONS_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '15 mg/mL [U-100% 13C; U-100% 15N] RIP1/RIP3, 100% H2O' '100% H2O' FIBRIL_SAMPLE fiber ? 2 '15 mg/mL [U-100% 15N; 2-13C-GLYCEROL] RIP1/RIP3, 100% H2O' '100% H2O' FIBRIL_SAMPLE fiber ? 3 '15 mg/mL [U-100% 15N; 1,3-13C-GLYCEROL] RIP1/RIP3, 100% H2O' '100% H2O' FIBRIL_SAMPLE fiber ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AvanceII ? Bruker 900 ? 2 Avance ? Bruker 750 ? # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 5V7Z 'torsion angle dynamics' ? 1 5V7Z 'molecular dynamics' ? 2 # _pdbx_nmr_ensemble.entry_id 5V7Z _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5V7Z _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 2 refinement AMBER ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'chemical shift assignment' SPARKY ? Goddard 4 'peak picking' SPARKY ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V7Z _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLID-STATE NMR' _exptl.method_details ? # _struct.entry_id 5V7Z _struct.title 'SSNMR Structure of the Human RIP1/RIP3 Necrosome' _struct.pdbx_descriptor 'Human RIP1/RIP3 complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V7Z _struct_keywords.text 'signaling complex, human functional amyloid, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 5 ? GLY A 14 ? ILE A 452 GLY A 461 AA1 2 ILE B 2 ? GLY B 11 ? ILE B 533 GLY B 542 AA1 3 ILE E 5 ? GLY E 14 ? ILE E 452 GLY E 461 AA1 4 SER F 5 ? GLY F 11 ? SER F 536 GLY F 542 AA2 1 ILE C 5 ? TYR C 6 ? ILE C 452 TYR C 453 AA2 2 ILE D 2 ? GLY D 11 ? ILE D 533 GLY D 542 AA2 3 SER C 9 ? GLY C 14 ? SER C 456 GLY C 461 AA3 1 ILE C 5 ? TYR C 6 ? ILE C 452 TYR C 453 AA3 2 ILE D 2 ? GLY D 11 ? ILE D 533 GLY D 542 AA3 3 ILE G 5 ? GLY G 14 ? ILE G 452 GLY G 461 AA3 4 SER H 5 ? GLY H 11 ? SER H 536 GLY H 542 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 14 ? N GLY A 461 O ILE B 10 ? O ILE B 541 AA1 2 3 N GLY B 11 ? N GLY B 542 O VAL E 13 ? O VAL E 460 AA1 3 4 N GLY E 14 ? N GLY E 461 O ILE F 10 ? O ILE F 541 AA2 1 2 N TYR C 6 ? N TYR C 453 O ILE D 2 ? O ILE D 533 AA2 2 3 O ILE D 10 ? O ILE D 541 N GLY C 14 ? N GLY C 461 AA3 1 2 N TYR C 6 ? N TYR C 453 O ILE D 2 ? O ILE D 533 AA3 2 3 N GLY D 11 ? N GLY D 542 O VAL G 13 ? O VAL G 460 AA3 3 4 N GLY G 14 ? N GLY G 461 O ILE H 10 ? O ILE H 541 # _atom_sites.entry_id 5V7Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 448 448 PRO PRO A . n A 1 2 LEU 2 449 449 LEU LEU A . n A 1 3 VAL 3 450 450 VAL VAL A . n A 1 4 ASN 4 451 451 ASN ASN A . n A 1 5 ILE 5 452 452 ILE ILE A . n A 1 6 TYR 6 453 453 TYR TYR A . n A 1 7 ASN 7 454 454 ASN ASN A . n A 1 8 CYS 8 455 455 CYS CYS A . n A 1 9 SER 9 456 456 SER SER A . n A 1 10 GLY 10 457 457 GLY GLY A . n A 1 11 VAL 11 458 458 VAL VAL A . n A 1 12 GLN 12 459 459 GLN GLN A . n A 1 13 VAL 13 460 460 VAL VAL A . n A 1 14 GLY 14 461 461 GLY GLY A . n A 1 15 ASP 15 462 462 ASP ASP A . n B 2 1 THR 1 532 532 THR THR B . n B 2 2 ILE 2 533 533 ILE ILE B . n B 2 3 TYR 3 534 534 TYR TYR B . n B 2 4 ASN 4 535 535 ASN ASN B . n B 2 5 SER 5 536 536 SER SER B . n B 2 6 THR 6 537 537 THR THR B . n B 2 7 GLY 7 538 538 GLY GLY B . n B 2 8 ILE 8 539 539 ILE ILE B . n B 2 9 GLN 9 540 540 GLN GLN B . n B 2 10 ILE 10 541 541 ILE ILE B . n B 2 11 GLY 11 542 542 GLY GLY B . n B 2 12 ALA 12 543 543 ALA ALA B . n B 2 13 TYR 13 544 544 TYR TYR B . n B 2 14 ASN 14 545 545 ASN ASN B . n B 2 15 TYR 15 546 546 TYR TYR B . n B 2 16 MET 16 547 547 MET MET B . n B 2 17 GLU 17 548 548 GLU GLU B . n B 2 18 ILE 18 549 549 ILE ILE B . n C 1 1 PRO 1 448 448 PRO PRO C . n C 1 2 LEU 2 449 449 LEU LEU C . n C 1 3 VAL 3 450 450 VAL VAL C . n C 1 4 ASN 4 451 451 ASN ASN C . n C 1 5 ILE 5 452 452 ILE ILE C . n C 1 6 TYR 6 453 453 TYR TYR C . n C 1 7 ASN 7 454 454 ASN ASN C . n C 1 8 CYS 8 455 455 CYS CYS C . n C 1 9 SER 9 456 456 SER SER C . n C 1 10 GLY 10 457 457 GLY GLY C . n C 1 11 VAL 11 458 458 VAL VAL C . n C 1 12 GLN 12 459 459 GLN GLN C . n C 1 13 VAL 13 460 460 VAL VAL C . n C 1 14 GLY 14 461 461 GLY GLY C . n C 1 15 ASP 15 462 462 ASP ASP C . n D 2 1 THR 1 532 532 THR THR D . n D 2 2 ILE 2 533 533 ILE ILE D . n D 2 3 TYR 3 534 534 TYR TYR D . n D 2 4 ASN 4 535 535 ASN ASN D . n D 2 5 SER 5 536 536 SER SER D . n D 2 6 THR 6 537 537 THR THR D . n D 2 7 GLY 7 538 538 GLY GLY D . n D 2 8 ILE 8 539 539 ILE ILE D . n D 2 9 GLN 9 540 540 GLN GLN D . n D 2 10 ILE 10 541 541 ILE ILE D . n D 2 11 GLY 11 542 542 GLY GLY D . n D 2 12 ALA 12 543 543 ALA ALA D . n D 2 13 TYR 13 544 544 TYR TYR D . n D 2 14 ASN 14 545 545 ASN ASN D . n D 2 15 TYR 15 546 546 TYR TYR D . n D 2 16 MET 16 547 547 MET MET D . n D 2 17 GLU 17 548 548 GLU GLU D . n D 2 18 ILE 18 549 549 ILE ILE D . n E 1 1 PRO 1 448 448 PRO PRO E . n E 1 2 LEU 2 449 449 LEU LEU E . n E 1 3 VAL 3 450 450 VAL VAL E . n E 1 4 ASN 4 451 451 ASN ASN E . n E 1 5 ILE 5 452 452 ILE ILE E . n E 1 6 TYR 6 453 453 TYR TYR E . n E 1 7 ASN 7 454 454 ASN ASN E . n E 1 8 CYS 8 455 455 CYS CYS E . n E 1 9 SER 9 456 456 SER SER E . n E 1 10 GLY 10 457 457 GLY GLY E . n E 1 11 VAL 11 458 458 VAL VAL E . n E 1 12 GLN 12 459 459 GLN GLN E . n E 1 13 VAL 13 460 460 VAL VAL E . n E 1 14 GLY 14 461 461 GLY GLY E . n E 1 15 ASP 15 462 462 ASP ASP E . n F 2 1 THR 1 532 532 THR THR F . n F 2 2 ILE 2 533 533 ILE ILE F . n F 2 3 TYR 3 534 534 TYR TYR F . n F 2 4 ASN 4 535 535 ASN ASN F . n F 2 5 SER 5 536 536 SER SER F . n F 2 6 THR 6 537 537 THR THR F . n F 2 7 GLY 7 538 538 GLY GLY F . n F 2 8 ILE 8 539 539 ILE ILE F . n F 2 9 GLN 9 540 540 GLN GLN F . n F 2 10 ILE 10 541 541 ILE ILE F . n F 2 11 GLY 11 542 542 GLY GLY F . n F 2 12 ALA 12 543 543 ALA ALA F . n F 2 13 TYR 13 544 544 TYR TYR F . n F 2 14 ASN 14 545 545 ASN ASN F . n F 2 15 TYR 15 546 546 TYR TYR F . n F 2 16 MET 16 547 547 MET MET F . n F 2 17 GLU 17 548 548 GLU GLU F . n F 2 18 ILE 18 549 549 ILE ILE F . n G 1 1 PRO 1 448 448 PRO PRO G . n G 1 2 LEU 2 449 449 LEU LEU G . n G 1 3 VAL 3 450 450 VAL VAL G . n G 1 4 ASN 4 451 451 ASN ASN G . n G 1 5 ILE 5 452 452 ILE ILE G . n G 1 6 TYR 6 453 453 TYR TYR G . n G 1 7 ASN 7 454 454 ASN ASN G . n G 1 8 CYS 8 455 455 CYS CYS G . n G 1 9 SER 9 456 456 SER SER G . n G 1 10 GLY 10 457 457 GLY GLY G . n G 1 11 VAL 11 458 458 VAL VAL G . n G 1 12 GLN 12 459 459 GLN GLN G . n G 1 13 VAL 13 460 460 VAL VAL G . n G 1 14 GLY 14 461 461 GLY GLY G . n G 1 15 ASP 15 462 462 ASP ASP G . n H 2 1 THR 1 532 532 THR THR H . n H 2 2 ILE 2 533 533 ILE ILE H . n H 2 3 TYR 3 534 534 TYR TYR H . n H 2 4 ASN 4 535 535 ASN ASN H . n H 2 5 SER 5 536 536 SER SER H . n H 2 6 THR 6 537 537 THR THR H . n H 2 7 GLY 7 538 538 GLY GLY H . n H 2 8 ILE 8 539 539 ILE ILE H . n H 2 9 GLN 9 540 540 GLN GLN H . n H 2 10 ILE 10 541 541 ILE ILE H . n H 2 11 GLY 11 542 542 GLY GLY H . n H 2 12 ALA 12 543 543 ALA ALA H . n H 2 13 TYR 13 544 544 TYR TYR H . n H 2 14 ASN 14 545 545 ASN ASN H . n H 2 15 TYR 15 546 546 TYR TYR H . n H 2 16 MET 16 547 547 MET MET H . n H 2 17 GLU 17 548 548 GLU GLU H . n H 2 18 ILE 18 549 549 ILE ILE H . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9690 ? 1 MORE -48 ? 1 'SSA (A^2)' 8380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-28 2 'Structure model' 1 1 2019-04-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 RIP1/RIP3 15 ? mg/mL '[U-100% 13C; U-100% 15N]' 2 RIP1/RIP3 15 ? mg/mL '[U-100% 15N; 2-13C-GLYCEROL]' 3 RIP1/RIP3 15 ? mg/mL '[U-100% 15N; 1,3-13C-GLYCEROL]' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU E 449 ? ? -102.91 -73.86 2 1 LEU G 449 ? ? -119.38 -71.93 3 2 LEU A 449 ? ? -149.06 -73.96 4 2 ASN A 454 ? ? 39.61 62.21 5 2 ASN B 535 ? ? 54.16 75.81 6 2 ASN D 535 ? ? 48.15 74.42 7 2 LEU G 449 ? ? -109.78 -70.86 8 2 VAL G 450 ? ? -69.46 98.21 9 3 ALA D 543 ? ? -165.31 119.00 10 5 ASN E 454 ? ? 50.17 74.70 11 5 ASN F 535 ? ? 39.99 53.26 12 5 ASN G 454 ? ? 50.44 75.00 13 5 ASN H 535 ? ? 37.05 55.81 14 6 ASN D 535 ? ? 48.07 72.96 15 7 ASN A 454 ? ? 47.46 71.63 16 7 ASN C 451 ? ? -120.80 -168.04 17 7 LEU E 449 ? ? -65.35 80.43 18 7 VAL E 450 ? ? 42.72 77.02 19 7 ASN E 454 ? ? 54.01 75.69 20 7 ASN G 454 ? ? 54.15 74.12 21 8 ASN D 535 ? ? 53.79 73.44 22 8 ASN F 535 ? ? 37.28 74.79 23 8 SER F 536 ? ? -119.30 78.17 24 8 ASN H 535 ? ? 46.91 77.96 25 9 ALA B 543 ? ? -167.61 117.80 26 9 ALA D 543 ? ? -164.80 110.57 27 10 LEU A 449 ? ? -143.28 -85.17 28 10 ASN A 451 ? ? -153.88 -148.41 29 10 TYR A 453 ? ? -74.98 -80.80 30 10 TYR C 453 ? ? -74.22 -81.16 31 10 TYR E 453 ? ? -74.93 -91.70 32 10 TYR G 453 ? ? -77.18 -92.16 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 9 GLY G 461 ? ? ASP G 462 ? ? 149.09 2 10 GLY E 461 ? ? ASP E 462 ? ? 149.63 #