HEADER TRANSFERASE/INHIBITOR 21-MAR-17 5V82 TITLE PIM1 KINASE IN COMPLEX WITH CPD17 (1-(6-(4,4-DIFLUOROPIPERIDIN-3-YL) TITLE 2 PYRIDIN-2-YL)-6-(6-METHYLPYRAZIN-2-YL)-1H-PYRAZOLO[4,3-C]PYRIDINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-313; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PIM1, SBDD, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,H.WALLWEBER REVDAT 3 06-MAR-24 5V82 1 REMARK REVDAT 2 07-JUN-17 5V82 1 JRNL REVDAT 1 10-MAY-17 5V82 0 JRNL AUTH X.WANG,A.KOLESNIKOV,S.TAY,G.CHAN,Q.CHAO,S.DO,J.DRUMMOND, JRNL AUTH 2 A.J.EBENS,N.LIU,J.LY,E.HARSTAD,H.HU,J.MOFFAT, JRNL AUTH 3 V.MUNUGALAVADLA,J.MURRAY,D.SLAGA,V.TSUI,M.VOLGRAF, JRNL AUTH 4 H.WALLWEBER,J.H.CHANG JRNL TITL DISCOVERY OF 5-AZAINDAZOLE (GNE-955) AS A POTENT PAN-PIM JRNL TITL 2 INHIBITOR WITH OPTIMIZED BIOAVAILABILITY. JRNL REF J. MED. CHEM. V. 60 4458 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28445037 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00418 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7894 - 4.3208 0.99 2754 148 0.1709 0.1719 REMARK 3 2 4.3208 - 3.4300 1.00 2707 157 0.1657 0.1798 REMARK 3 3 3.4300 - 2.9966 1.00 2686 157 0.1874 0.1996 REMARK 3 4 2.9966 - 2.7227 1.00 2741 132 0.1813 0.2260 REMARK 3 5 2.7227 - 2.5275 1.00 2684 156 0.1914 0.2047 REMARK 3 6 2.5275 - 2.3785 1.00 2711 136 0.1897 0.2216 REMARK 3 7 2.3785 - 2.2594 1.00 2713 139 0.1700 0.2078 REMARK 3 8 2.2594 - 2.1611 1.00 2726 139 0.1776 0.1928 REMARK 3 9 2.1611 - 2.0779 1.00 2718 127 0.1949 0.2194 REMARK 3 10 2.0779 - 2.0062 1.00 2685 155 0.2158 0.2738 REMARK 3 11 2.0062 - 1.9435 1.00 2717 122 0.2493 0.2790 REMARK 3 12 1.9435 - 1.8879 1.00 2672 163 0.2895 0.3415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 45.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2333 REMARK 3 ANGLE : 1.025 3171 REMARK 3 CHIRALITY : 0.076 334 REMARK 3 PLANARITY : 0.005 412 REMARK 3 DIHEDRAL : 13.788 852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 34:49) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4728 39.4483 -3.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.5049 REMARK 3 T33: 0.6399 T12: -0.1919 REMARK 3 T13: -0.0385 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 0.1399 L22: 0.4020 REMARK 3 L33: 1.4168 L12: 0.0693 REMARK 3 L13: -0.0612 L23: 0.6558 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.3674 S13: 0.6273 REMARK 3 S21: 0.0892 S22: 0.2141 S23: -0.1588 REMARK 3 S31: -0.0415 S32: 0.4467 S33: 0.3458 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 50:73) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7641 37.6314 -5.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.3462 REMARK 3 T33: 0.3631 T12: -0.0780 REMARK 3 T13: 0.0243 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1396 L22: 1.0914 REMARK 3 L33: 0.6728 L12: 0.0131 REMARK 3 L13: 0.1423 L23: 0.7097 REMARK 3 S TENSOR REMARK 3 S11: 0.1657 S12: 0.0200 S13: 0.0901 REMARK 3 S21: 0.3478 S22: -0.0417 S23: -0.5142 REMARK 3 S31: 0.0667 S32: 0.6009 S33: 0.2012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 74:96) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5753 23.9361 -15.0154 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.5150 REMARK 3 T33: 0.4370 T12: -0.0497 REMARK 3 T13: 0.0821 T23: -0.2271 REMARK 3 L TENSOR REMARK 3 L11: 0.2768 L22: 1.1000 REMARK 3 L33: 0.8002 L12: -0.2932 REMARK 3 L13: 0.0520 L23: -0.8309 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.3692 S13: -0.4637 REMARK 3 S21: -0.5499 S22: 0.4380 S23: -0.1341 REMARK 3 S31: 0.3070 S32: 0.1209 S33: 0.3149 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:140) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2735 35.7082 -3.0385 REMARK 3 T TENSOR REMARK 3 T11: 0.3237 T22: 0.3593 REMARK 3 T33: 0.3295 T12: -0.0602 REMARK 3 T13: 0.0156 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.3670 L22: 0.1273 REMARK 3 L33: 0.4431 L12: 0.2061 REMARK 3 L13: -0.0333 L23: -0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.0563 S13: 0.2594 REMARK 3 S21: 0.1091 S22: -0.0525 S23: -0.0659 REMARK 3 S31: -0.2535 S32: 0.1976 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:204) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6875 27.0751 -3.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.2808 REMARK 3 T33: 0.2811 T12: -0.0393 REMARK 3 T13: -0.0038 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.3493 L22: 0.3370 REMARK 3 L33: 0.7774 L12: 0.1951 REMARK 3 L13: 0.4063 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0094 S13: 0.0430 REMARK 3 S21: -0.1219 S22: 0.1298 S23: 0.0594 REMARK 3 S31: -0.0403 S32: 0.0843 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:250) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6372 15.6680 5.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.2876 REMARK 3 T33: 0.2788 T12: 0.0214 REMARK 3 T13: -0.0390 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.5985 L22: 0.3243 REMARK 3 L33: 0.1795 L12: 0.3246 REMARK 3 L13: -0.3361 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.1403 S13: -0.1367 REMARK 3 S21: 0.2722 S22: 0.1091 S23: 0.1081 REMARK 3 S31: 0.3608 S32: 0.0753 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:290) REMARK 3 ORIGIN FOR THE GROUP (A): -45.7400 19.7993 4.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.2898 REMARK 3 T33: 0.3119 T12: -0.0524 REMARK 3 T13: 0.0025 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.4122 L22: 0.3655 REMARK 3 L33: 0.3149 L12: -0.1392 REMARK 3 L13: -0.1079 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: 0.0581 S13: -0.1447 REMARK 3 S21: 0.0646 S22: 0.0824 S23: 0.3748 REMARK 3 S31: 0.2625 S32: -0.3393 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 291:305) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6201 41.6829 0.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.4483 T22: 0.2748 REMARK 3 T33: 0.4544 T12: 0.0430 REMARK 3 T13: 0.0261 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4358 L22: 0.5107 REMARK 3 L33: 0.5709 L12: 0.5780 REMARK 3 L13: -0.6626 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.6091 S13: 0.3527 REMARK 3 S21: -0.1290 S22: 0.3549 S23: 0.5846 REMARK 3 S31: -0.6421 S32: -0.2800 S33: 0.0860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37600 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.833 REMARK 200 RESOLUTION RANGE LOW (A) : 41.779 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.86800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.5, LISO4, PEG 4000, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.75200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.87600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.31400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.43800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 LYS A 314 REMARK 465 LEU A 315 REMARK 465 ALA A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -32.48 -131.37 REMARK 500 SER A 98 -157.97 -113.87 REMARK 500 ASP A 167 45.79 -149.15 REMARK 500 ASP A 186 78.85 64.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96Y A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V80 RELATED DB: PDB DBREF 5V82 A 29 313 UNP P11309 PIM1_HUMAN 29 313 SEQADV 5V82 MET A 28 UNP P11309 INITIATING METHIONINE SEQADV 5V82 LYS A 314 UNP P11309 EXPRESSION TAG SEQADV 5V82 LEU A 315 UNP P11309 EXPRESSION TAG SEQADV 5V82 ALA A 316 UNP P11309 EXPRESSION TAG SEQADV 5V82 ALA A 317 UNP P11309 EXPRESSION TAG SEQADV 5V82 ALA A 318 UNP P11309 EXPRESSION TAG SEQADV 5V82 LEU A 319 UNP P11309 EXPRESSION TAG SEQADV 5V82 GLU A 320 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 321 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 322 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 323 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 324 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 325 UNP P11309 EXPRESSION TAG SEQADV 5V82 HIS A 326 UNP P11309 EXPRESSION TAG SEQRES 1 A 299 MET LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN VAL SEQRES 2 A 299 GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL TYR SEQRES 3 A 299 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 4 A 299 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 5 A 299 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 6 A 299 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 7 A 299 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 8 A 299 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 9 A 299 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 10 A 299 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 11 A 299 CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 12 A 299 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 13 A 299 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 14 A 299 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 15 A 299 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 16 A 299 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 17 A 299 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 18 A 299 ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SER SEQRES 19 A 299 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 20 A 299 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 21 A 299 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 22 A 299 GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER LYS SEQRES 23 A 299 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET 96Y A 401 30 HETNAM 96Y 1-{6-[(3R)-4,4-DIFLUOROPIPERIDIN-3-YL]PYRIDIN-2-YL}-6- HETNAM 2 96Y (6-METHYLPYRAZIN-2-YL)-1H-PYRAZOLO[4,3-C]PYRIDINE FORMUL 2 96Y C21 H19 F2 N7 FORMUL 3 HOH *142(H2 O) HELIX 1 AA1 ASP A 72 ILE A 74 5 3 HELIX 2 AA2 MET A 88 SER A 97 1 10 HELIX 3 AA3 LEU A 129 GLY A 137 1 9 HELIX 4 AA4 GLN A 140 CYS A 161 1 22 HELIX 5 AA5 LYS A 169 GLU A 171 5 3 HELIX 6 AA6 THR A 204 SER A 208 5 5 HELIX 7 AA7 PRO A 209 HIS A 216 1 8 HELIX 8 AA8 HIS A 219 GLY A 238 1 20 HELIX 9 AA9 HIS A 244 GLY A 251 1 8 HELIX 10 AB1 SER A 260 LEU A 271 1 12 HELIX 11 AB2 ARG A 274 ARG A 278 5 5 HELIX 12 AB3 THR A 280 ASN A 286 1 7 HELIX 13 AB4 HIS A 287 GLN A 291 5 5 HELIX 14 AB5 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 GLY A 47 0 SHEET 2 AA1 5 GLY A 50 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O HIS A 68 N SER A 51 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 120 N ALA A 65 SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLU A 79 0 SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 GLU A 124 PRO A 125 0 4.31 SITE 1 AC1 10 LEU A 44 PHE A 49 ALA A 65 LYS A 67 SITE 2 AC1 10 GLU A 121 ASP A 128 GLU A 171 LEU A 174 SITE 3 AC1 10 ILE A 185 ASP A 186 CRYST1 96.485 96.485 80.628 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010364 0.005984 0.000000 0.00000 SCALE2 0.000000 0.011968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012403 0.00000