HEADER HYDROLASE 21-MAR-17 5V86 TITLE STRUCTURE OF DCN1 BOUND TO NACM-OPT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME,DCN1-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 62-259; COMPND 5 SYNONYM: DCUN1 DOMAIN-CONTAINING PROTEIN 1,DEFECTIVE IN CULLIN COMPND 6 NEDDYLATION PROTEIN 1-LIKE PROTEIN 1,SQUAMOUS CELL CARCINOMA-RELATED COMPND 7 ONCOGENE; COMPND 8 EC: 3.2.1.17; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10665, 9606; SOURCE 5 GENE: E, T4TP126, DCUN1D1, DCUN1L1, RP42, SCCRO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF DUET KEYWDS E3 LIGASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.GUY,B.A.SCHULMAN,D.C.SCOTT,J.T.HAMMILL REVDAT 6 06-MAR-24 5V86 1 REMARK REVDAT 5 01-JAN-20 5V86 1 REMARK REVDAT 4 20-SEP-17 5V86 1 REMARK REVDAT 3 06-SEP-17 5V86 1 JRNL REVDAT 2 21-JUN-17 5V86 1 JRNL REVDAT 1 24-MAY-17 5V86 0 JRNL AUTH D.C.SCOTT,J.T.HAMMILL,J.MIN,D.Y.RHEE,M.CONNELLY, JRNL AUTH 2 V.O.SVIDERSKIY,D.BHASIN,Y.CHEN,S.S.ONG,S.C.CHAI,A.N.GOKTUG, JRNL AUTH 3 G.HUANG,J.K.MONDA,J.LOW,H.S.KIM,J.A.PAULO,J.R.CANNON, JRNL AUTH 4 A.A.SHELAT,T.CHEN,I.R.KELSALL,A.F.ALPI,V.PAGALA,X.WANG, JRNL AUTH 5 J.PENG,B.SINGH,J.W.HARPER,B.A.SCHULMAN,R.K.GUY JRNL TITL BLOCKING AN N-TERMINAL ACETYLATION-DEPENDENT PROTEIN JRNL TITL 2 INTERACTION INHIBITS AN E3 LIGASE. JRNL REF NAT. CHEM. BIOL. V. 13 850 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28581483 JRNL DOI 10.1038/NCHEMBIO.2386 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 77073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1860 - 4.1657 0.85 2335 129 0.1711 0.1929 REMARK 3 2 4.1657 - 3.3088 0.98 2656 138 0.1378 0.1939 REMARK 3 3 3.3088 - 2.8912 0.99 2671 156 0.1558 0.1858 REMARK 3 4 2.8912 - 2.6272 0.99 2679 135 0.1615 0.1927 REMARK 3 5 2.6272 - 2.4390 0.99 2687 127 0.1559 0.1830 REMARK 3 6 2.4390 - 2.2953 1.00 2662 141 0.1456 0.1844 REMARK 3 7 2.2953 - 2.1805 1.00 2656 154 0.1451 0.1697 REMARK 3 8 2.1805 - 2.0856 1.00 2708 125 0.1432 0.1896 REMARK 3 9 2.0856 - 2.0053 1.00 2646 163 0.1450 0.1607 REMARK 3 10 2.0053 - 1.9362 1.00 2636 151 0.1521 0.1909 REMARK 3 11 1.9362 - 1.8756 1.00 2668 155 0.1609 0.2237 REMARK 3 12 1.8756 - 1.8220 1.00 2668 134 0.1595 0.2307 REMARK 3 13 1.8220 - 1.7741 0.99 2665 138 0.1690 0.2195 REMARK 3 14 1.7741 - 1.7308 0.99 2677 138 0.1638 0.2032 REMARK 3 15 1.7308 - 1.6915 0.99 2639 146 0.1621 0.2134 REMARK 3 16 1.6915 - 1.6555 0.99 2653 142 0.1533 0.2107 REMARK 3 17 1.6555 - 1.6224 0.99 2655 146 0.1573 0.2181 REMARK 3 18 1.6224 - 1.5918 0.99 2606 140 0.1543 0.1865 REMARK 3 19 1.5918 - 1.5633 0.99 2684 119 0.1487 0.1919 REMARK 3 20 1.5633 - 1.5369 0.99 2637 137 0.1485 0.2199 REMARK 3 21 1.5369 - 1.5121 0.99 2650 131 0.1587 0.1911 REMARK 3 22 1.5121 - 1.4888 0.98 2669 120 0.1662 0.2135 REMARK 3 23 1.4888 - 1.4669 0.98 2590 130 0.1625 0.2405 REMARK 3 24 1.4669 - 1.4463 0.96 2585 138 0.1755 0.2251 REMARK 3 25 1.4463 - 1.4267 0.96 2555 143 0.1746 0.2147 REMARK 3 26 1.4267 - 1.4082 0.95 2526 142 0.1920 0.2395 REMARK 3 27 1.4082 - 1.3906 0.92 2472 130 0.2111 0.2777 REMARK 3 28 1.3906 - 1.3738 0.86 2262 128 0.2311 0.2844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3020 REMARK 3 ANGLE : 1.400 4075 REMARK 3 CHIRALITY : 0.081 434 REMARK 3 PLANARITY : 0.008 527 REMARK 3 DIHEDRAL : 13.757 1147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00017 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG3350, 0.2M NH4BR, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.42450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 HIS A 1203 REMARK 465 HIS A 1204 REMARK 465 LYS A 1205 REMARK 465 ARG A 1206 REMARK 465 ILE A 1251 REMARK 465 ALA A 1252 REMARK 465 GLY A 1253 REMARK 465 THR A 1254 REMARK 465 LYS A 1255 REMARK 465 SER A 1256 REMARK 465 THR A 1257 REMARK 465 THR A 1258 REMARK 465 VAL A 1259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -10 CG CD OE1 NE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 TYR A 24 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 1248 O HOH A 2104 1.35 REMARK 500 HZ2 LYS A 83 O HOH A 2117 1.57 REMARK 500 O HOH A 2642 O HOH A 2663 1.86 REMARK 500 O HOH A 2122 O HOH A 2321 1.89 REMARK 500 O HOH A 2390 O HOH A 2504 1.90 REMARK 500 O HOH A 2589 O HOH A 2603 1.91 REMARK 500 O HOH A 2230 O HOH A 2546 1.96 REMARK 500 O HOH A 2242 O HOH A 2363 1.98 REMARK 500 O HOH A 2494 O HOH A 2501 1.99 REMARK 500 O HOH A 2569 O HOH A 2669 2.04 REMARK 500 OD2 ASP A 1132 O HOH A 2101 2.05 REMARK 500 O HOH A 2661 O HOH A 2679 2.06 REMARK 500 O HOH A 2403 O HOH A 2408 2.06 REMARK 500 O HOH A 2566 O HOH A 2589 2.07 REMARK 500 O HOH A 2362 O HOH A 2522 2.07 REMARK 500 O HOH A 2430 O HOH A 2557 2.07 REMARK 500 O HOH A 2121 O HOH A 2201 2.09 REMARK 500 O HOH A 2524 O HOH A 2547 2.09 REMARK 500 OD1 ASP A 159 O HOH A 2102 2.11 REMARK 500 O HOH A 2570 O HOH A 2586 2.11 REMARK 500 O HOH A 2540 O HOH A 2544 2.12 REMARK 500 O HOH A 2612 O HOH A 2668 2.13 REMARK 500 O HOH A 2265 O HOH A 2537 2.13 REMARK 500 O HOH A 2507 O HOH A 2585 2.13 REMARK 500 OH TYR A 18 O HOH A 2103 2.14 REMARK 500 O HOH A 2562 O HOH A 2651 2.15 REMARK 500 O HOH A 2662 O HOH A 2670 2.17 REMARK 500 O HOH A 2363 O HOH A 2518 2.17 REMARK 500 O HOH A 2180 O HOH A 2493 2.18 REMARK 500 O HOH A 2382 O HOH A 2518 2.18 REMARK 500 O HOH A 2605 O HOH A 2641 2.19 REMARK 500 NH2 ARG A 1248 O HOH A 2104 2.19 REMARK 500 O HOH A 2342 O HOH A 2597 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2194 O HOH A 2237 1656 1.91 REMARK 500 O HOH A 2118 O HOH A 2360 1655 1.95 REMARK 500 O HOH A 2112 O HOH A 2503 1455 1.96 REMARK 500 O HOH A 2413 O HOH A 2531 1556 2.04 REMARK 500 O HOH A 2609 O HOH A 2665 1554 2.12 REMARK 500 O HOH A 2413 O HOH A 2484 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 -165.42 -77.92 REMARK 500 MET A1227 16.33 58.66 REMARK 500 PRO A1249 14.18 -66.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2677 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2678 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2679 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A2680 DISTANCE = 10.37 ANGSTROMS REMARK 525 HOH A2681 DISTANCE = 11.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZA A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V83 RELATED DB: PDB REMARK 900 RELATED ID: 5V88 RELATED DB: PDB REMARK 900 RELATED ID: 5V89 RELATED DB: PDB DBREF 5V86 A 1 164 UNP D9IEF7 D9IEF7_BPT4 1 164 DBREF 5V86 A 1062 1259 UNP Q96GG9 DCNL1_HUMAN 62 259 SEQADV 5V86 MET A -21 UNP D9IEF7 INITIATING METHIONINE SEQADV 5V86 GLY A -20 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 SER A -19 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 SER A -18 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -17 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -16 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -15 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -14 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -13 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 HIS A -12 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 SER A -11 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 GLN A -10 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 ASP A -9 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 LEU A -8 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 GLU A -7 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 ASN A -6 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 LEU A -5 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 TYR A -4 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 PHE A -3 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 GLN A -2 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 GLY A -1 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 SER A 0 UNP D9IEF7 EXPRESSION TAG SEQADV 5V86 THR A 54 UNP D9IEF7 CYS 54 CONFLICT SEQADV 5V86 ALA A 97 UNP D9IEF7 CYS 97 CONFLICT SEQADV 5V86 ALA A 127 UNP D9IEF7 ASP 127 ENGINEERED MUTATION SEQADV 5V86 THR A 146 UNP D9IEF7 ALA 146 CONFLICT SEQADV 5V86 ALA A 154 UNP D9IEF7 ARG 154 ENGINEERED MUTATION SEQRES 1 A 384 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 384 LEU GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE PHE SEQRES 3 A 384 GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE SEQRES 4 A 384 TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY SEQRES 5 A 384 HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SEQRES 6 A 384 SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN GLY SEQRES 7 A 384 VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN SEQRES 8 A 384 ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA SEQRES 9 A 384 LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG SEQRES 10 A 384 ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU SEQRES 11 A 384 THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU SEQRES 12 A 384 GLN GLN LYS ARG TRP ALA GLU ALA ALA VAL ASN LEU ALA SEQRES 13 A 384 LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG THR LYS SEQRES 14 A 384 ARG VAL ILE THR THR PHE ALA THR GLY THR TRP ASP ALA SEQRES 15 A 384 TYR LYS ASN LEU ARG LYS LYS LEU GLU GLN LEU TYR ASN SEQRES 16 A 384 ARG TYR LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY ILE SEQRES 17 A 384 ASP GLY ILE GLN GLN PHE CYS ASP ASP LEU ALA LEU ASP SEQRES 18 A 384 PRO ALA SER ILE SER VAL LEU ILE ILE ALA TRP LYS PHE SEQRES 19 A 384 ARG ALA ALA THR GLN CYS GLU PHE SER LYS GLN GLU PHE SEQRES 20 A 384 MET ASP GLY MET THR GLU LEU GLY CYS ASP SER ILE GLU SEQRES 21 A 384 LYS LEU LYS ALA GLN ILE PRO LYS MET GLU GLN GLU LEU SEQRES 22 A 384 LYS GLU PRO GLY ARG PHE LYS ASP PHE TYR GLN PHE THR SEQRES 23 A 384 PHE ASN PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP SEQRES 24 A 384 LEU GLU MET ALA ILE ALA TYR TRP ASN LEU VAL LEU ASN SEQRES 25 A 384 GLY ARG PHE LYS PHE LEU ASP LEU TRP ASN LYS PHE LEU SEQRES 26 A 384 LEU GLU HIS HIS LYS ARG SER ILE PRO LYS ASP THR TRP SEQRES 27 A 384 ASN LEU LEU LEU ASP PHE SER THR MET ILE ALA ASP ASP SEQRES 28 A 384 MET SER ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU SEQRES 29 A 384 ILE ASP ASP PHE VAL GLU PHE ALA ARG PRO GLN ILE ALA SEQRES 30 A 384 GLY THR LYS SER THR THR VAL HET 8ZA A2001 29 HETNAM 8ZA N-BENZYL-N-(1-BUTYLPIPERIDIN-4-YL)-N'-(3,4- HETNAM 2 8ZA DICHLOROPHENYL)UREA FORMUL 2 8ZA C23 H29 CL2 N3 O FORMUL 3 HOH *581(H2 O) HELIX 1 AA1 ASP A -9 TYR A -4 5 6 HELIX 2 AA2 ASN A 2 GLU A 11 1 10 HELIX 3 AA3 SER A 38 GLY A 51 1 14 HELIX 4 AA4 THR A 59 ARG A 80 1 22 HELIX 5 AA5 LEU A 84 LEU A 91 1 8 HELIX 6 AA6 ASP A 92 GLY A 113 1 22 HELIX 7 AA7 PHE A 114 GLN A 123 1 10 HELIX 8 AA8 ARG A 125 ALA A 134 1 10 HELIX 9 AA9 SER A 136 THR A 142 1 7 HELIX 10 AB1 THR A 142 GLY A 156 1 15 HELIX 11 AB2 TRP A 158 LYS A 1073 1 19 HELIX 12 AB3 GLY A 1082 LEU A 1093 1 12 HELIX 13 AB4 SER A 1099 PHE A 1109 1 11 HELIX 14 AB5 LYS A 1119 LEU A 1129 1 11 HELIX 15 AB6 SER A 1133 LEU A 1148 1 16 HELIX 16 AB7 GLY A 1152 LYS A 1166 1 15 HELIX 17 AB8 ASP A 1174 ASN A 1187 1 14 HELIX 18 AB9 PHE A 1192 GLU A 1202 1 11 HELIX 19 AC1 PRO A 1209 ILE A 1223 1 15 HELIX 20 AC2 PRO A 1237 ARG A 1248 1 12 SHEET 1 AA1 3 ARG A 14 LYS A 19 0 SHEET 2 AA1 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 AA1 3 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 SHEET 1 AA2 2 LYS A1080 ILE A1081 0 SHEET 2 AA2 2 PHE A1117 SER A1118 -1 O PHE A1117 N ILE A1081 SITE 1 AC1 14 ILE A1083 ILE A1086 GLN A1087 PRO A1097 SITE 2 AC1 14 VAL A1102 ILE A1105 ALA A1106 GLN A1114 SITE 3 AC1 14 GLU A1116 PHE A1117 PHE A1164 ALA A1180 SITE 4 AC1 14 TYR A1181 HOH A2263 CRYST1 35.045 96.849 59.302 90.00 105.83 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028535 0.000000 0.008088 0.00000 SCALE2 0.000000 0.010325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017527 0.00000