HEADER RNA BINDING PROTEIN 21-MAR-17 5V87 TITLE CRYSTAL STRUCTURE OF LARP1-UNIQUE DOMAIN DM15 BOUND TO M7GPPPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CAP-BINDING, RNA-BINDING, DM15, 5'TOP, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BERMAN,R.M.LAHR REVDAT 3 04-OCT-23 5V87 1 REMARK REVDAT 2 22-NOV-17 5V87 1 REMARK REVDAT 1 19-APR-17 5V87 0 JRNL AUTH R.M.LAHR,B.D.FONSECA,G.E.CIOTTI,H.A.AL-ASHTAL,J.J.JIA, JRNL AUTH 2 M.R.NIKLAUS,S.P.BLAGDEN,T.ALAIN,A.J.BERMAN JRNL TITL LA-RELATED PROTEIN 1 (LARP1) BINDS THE MRNA CAP, BLOCKING JRNL TITL 2 EIF4F ASSEMBLY ON TOP MRNAS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28379136 JRNL DOI 10.7554/ELIFE.24146 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 34328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9883 - 4.0715 0.94 2445 149 0.1722 0.1855 REMARK 3 2 4.0715 - 3.2339 0.62 1580 96 0.1694 0.1968 REMARK 3 3 3.2339 - 2.8257 0.99 2528 154 0.1807 0.2055 REMARK 3 4 2.8257 - 2.5677 1.00 2539 153 0.1868 0.1973 REMARK 3 5 2.5677 - 2.3838 1.00 2521 154 0.1866 0.2067 REMARK 3 6 2.3838 - 2.2433 0.77 1951 119 0.1760 0.2071 REMARK 3 7 2.2433 - 2.1310 0.75 1902 118 0.1867 0.2181 REMARK 3 8 2.1310 - 2.0383 0.99 2537 154 0.1846 0.2081 REMARK 3 9 2.0383 - 1.9599 0.99 2462 150 0.1823 0.2040 REMARK 3 10 1.9599 - 1.8923 0.88 2222 133 0.1991 0.2277 REMARK 3 11 1.8923 - 1.8331 0.95 2390 147 0.1935 0.2327 REMARK 3 12 1.8331 - 1.7807 0.98 2458 150 0.1876 0.2171 REMARK 3 13 1.7807 - 1.7339 0.97 2463 149 0.2031 0.2087 REMARK 3 14 1.7339 - 1.6916 0.94 2360 144 0.2252 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2710 REMARK 3 ANGLE : 0.884 3649 REMARK 3 CHIRALITY : 0.045 345 REMARK 3 PLANARITY : 0.005 455 REMARK 3 DIHEDRAL : 11.513 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 794 THROUGH 809 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4008 1.0255 -10.9074 REMARK 3 T TENSOR REMARK 3 T11: 0.4266 T22: 0.7226 REMARK 3 T33: 0.5952 T12: 0.1193 REMARK 3 T13: -0.0379 T23: -0.2718 REMARK 3 L TENSOR REMARK 3 L11: 6.6932 L22: 1.4977 REMARK 3 L33: 0.5678 L12: -2.5081 REMARK 3 L13: -1.6078 L23: 0.9214 REMARK 3 S TENSOR REMARK 3 S11: 0.3113 S12: 1.3683 S13: -0.5966 REMARK 3 S21: 0.2594 S22: 0.5743 S23: -0.9006 REMARK 3 S31: 0.2450 S32: 0.6463 S33: 0.3614 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 810 THROUGH 847 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7140 9.7165 -3.1509 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.2438 REMARK 3 T33: 0.1997 T12: 0.0034 REMARK 3 T13: -0.0098 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 3.6200 L22: 3.8932 REMARK 3 L33: 4.4361 L12: 0.7829 REMARK 3 L13: 2.2358 L23: 1.4033 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.2218 S13: 0.0741 REMARK 3 S21: 0.2765 S22: -0.0316 S23: -0.3841 REMARK 3 S31: 0.0666 S32: 0.5373 S33: 0.0861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 848 THROUGH 871 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0634 9.0836 -0.6704 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.1354 REMARK 3 T33: 0.1256 T12: -0.0056 REMARK 3 T13: -0.0040 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.7726 L22: 5.6368 REMARK 3 L33: 3.7001 L12: 0.4831 REMARK 3 L13: 0.5026 L23: -0.7329 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0649 S13: 0.0619 REMARK 3 S21: 0.2923 S22: -0.0588 S23: -0.0505 REMARK 3 S31: 0.0449 S32: -0.0207 S33: 0.0186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 872 THROUGH 887 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3893 6.9654 -10.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.1449 REMARK 3 T33: 0.1275 T12: 0.0280 REMARK 3 T13: -0.0085 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 6.2995 L22: 7.5981 REMARK 3 L33: 6.7752 L12: 2.9262 REMARK 3 L13: 1.3190 L23: 3.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.2205 S13: -0.2371 REMARK 3 S21: -0.2549 S22: -0.0695 S23: -0.1117 REMARK 3 S31: 0.1833 S32: 0.0105 S33: -0.0210 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 888 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9995 6.5203 -5.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.2589 REMARK 3 T33: 0.1854 T12: -0.0231 REMARK 3 T13: 0.0048 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.7704 L22: 2.4092 REMARK 3 L33: 2.4962 L12: -1.1048 REMARK 3 L13: 1.4890 L23: -2.4368 REMARK 3 S TENSOR REMARK 3 S11: 0.1226 S12: -0.3531 S13: -0.2810 REMARK 3 S21: 0.1212 S22: 0.0920 S23: 0.3198 REMARK 3 S31: 0.0273 S32: -0.2730 S33: -0.2233 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 922 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3973 11.0043 -14.8739 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1954 REMARK 3 T33: 0.1691 T12: 0.0051 REMARK 3 T13: -0.0039 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.6477 L22: 4.4865 REMARK 3 L33: 5.3424 L12: 2.6302 REMARK 3 L13: 1.4825 L23: 3.7362 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.2952 S13: -0.1145 REMARK 3 S21: -0.3985 S22: 0.0964 S23: -0.0062 REMARK 3 S31: 0.0512 S32: -0.1499 S33: -0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 923 THROUGH 941 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2403 6.8703 -11.3202 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.4344 REMARK 3 T33: 0.3960 T12: -0.0564 REMARK 3 T13: -0.0109 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 8.7053 L22: 3.3231 REMARK 3 L33: 7.7364 L12: -3.0137 REMARK 3 L13: -2.5237 L23: 3.4962 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.1492 S13: 0.1207 REMARK 3 S21: -0.1492 S22: 0.0508 S23: 0.8036 REMARK 3 S31: 0.2019 S32: -0.5434 S33: -0.0048 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 794 THROUGH 803 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5974 20.6290 -29.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.5649 REMARK 3 T33: 0.6446 T12: 0.0058 REMARK 3 T13: -0.0357 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 8.7675 L22: 3.0388 REMARK 3 L33: 3.5711 L12: 0.4989 REMARK 3 L13: 5.0047 L23: 1.7422 REMARK 3 S TENSOR REMARK 3 S11: 0.2139 S12: 0.2974 S13: -1.4995 REMARK 3 S21: -0.1797 S22: -0.5815 S23: 1.1454 REMARK 3 S31: 0.2377 S32: -1.3855 S33: 0.4450 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 804 THROUGH 809 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6426 22.3191 -37.4961 REMARK 3 T TENSOR REMARK 3 T11: 0.6629 T22: 0.5250 REMARK 3 T33: 0.3125 T12: 0.1528 REMARK 3 T13: -0.1093 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.1922 L22: 3.2085 REMARK 3 L33: 5.9118 L12: -0.8799 REMARK 3 L13: 1.0620 L23: 4.0523 REMARK 3 S TENSOR REMARK 3 S11: 0.7416 S12: 1.3714 S13: -0.4491 REMARK 3 S21: -1.6674 S22: -0.7982 S23: 0.1577 REMARK 3 S31: 0.8447 S32: 0.3600 S33: 0.0406 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 810 THROUGH 827 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5296 32.8806 -22.7735 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.3104 REMARK 3 T33: 0.3754 T12: 0.1081 REMARK 3 T13: -0.0572 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 4.7202 L22: 2.8894 REMARK 3 L33: 8.1502 L12: -0.2271 REMARK 3 L13: 1.9893 L23: 2.7343 REMARK 3 S TENSOR REMARK 3 S11: -0.1843 S12: -0.0148 S13: 0.5053 REMARK 3 S21: -0.1699 S22: -0.0519 S23: 0.2615 REMARK 3 S31: -0.8550 S32: -0.6217 S33: 0.2389 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 828 THROUGH 847 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1201 25.4969 -21.8085 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1950 REMARK 3 T33: 0.2115 T12: 0.0200 REMARK 3 T13: -0.0726 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 6.3686 L22: 3.5036 REMARK 3 L33: 3.4203 L12: -2.8948 REMARK 3 L13: -3.4473 L23: 1.4771 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.1372 S13: 0.2526 REMARK 3 S21: 0.0257 S22: 0.0910 S23: -0.0226 REMARK 3 S31: 0.0592 S32: -0.0833 S33: -0.0056 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 848 THROUGH 887 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9356 27.4116 -23.0485 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.2463 REMARK 3 T33: 0.2625 T12: -0.0294 REMARK 3 T13: -0.0227 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 2.7410 L22: 3.0683 REMARK 3 L33: 5.6169 L12: -0.3213 REMARK 3 L13: 0.4378 L23: 0.0701 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.3191 S13: 0.4619 REMARK 3 S21: -0.1184 S22: 0.0110 S23: -0.0726 REMARK 3 S31: -0.3253 S32: 0.2432 S33: 0.0217 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 888 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0614 27.8969 -24.4426 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.5365 REMARK 3 T33: 0.3515 T12: -0.0788 REMARK 3 T13: -0.0066 T23: 0.2195 REMARK 3 L TENSOR REMARK 3 L11: 0.3696 L22: 2.0918 REMARK 3 L33: 1.5906 L12: -0.0663 REMARK 3 L13: -0.6348 L23: -0.9023 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.7032 S13: 0.4765 REMARK 3 S21: -0.1004 S22: -0.2015 S23: -0.2484 REMARK 3 S31: -0.4395 S32: 0.2106 S33: -0.1659 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 907 THROUGH 922 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8354 17.6329 -20.9875 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.3291 REMARK 3 T33: 0.2156 T12: 0.0401 REMARK 3 T13: 0.0200 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 4.9766 L22: 5.9209 REMARK 3 L33: 5.2993 L12: 0.9121 REMARK 3 L13: -1.1183 L23: 2.6519 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: 0.7231 S13: -0.1213 REMARK 3 S21: -0.0793 S22: -0.0903 S23: -0.4887 REMARK 3 S31: 0.4260 S32: 0.2636 S33: 0.0284 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 923 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7539 22.7842 -30.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.5531 T22: 0.9122 REMARK 3 T33: 0.5157 T12: 0.1292 REMARK 3 T13: 0.1969 T23: 0.2142 REMARK 3 L TENSOR REMARK 3 L11: 7.1946 L22: 8.2324 REMARK 3 L33: 2.3667 L12: 6.3106 REMARK 3 L13: 4.1258 L23: 3.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: 1.3723 S13: 0.5953 REMARK 3 S21: -0.3835 S22: -0.3399 S23: -0.1203 REMARK 3 S31: 0.5309 S32: 0.7896 S33: 0.3985 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 932 THROUGH 940 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9475 22.8223 -18.5757 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.7997 REMARK 3 T33: 0.5037 T12: -0.1216 REMARK 3 T13: 0.0329 T23: 0.2233 REMARK 3 L TENSOR REMARK 3 L11: 1.5458 L22: 1.2835 REMARK 3 L33: 0.6768 L12: -0.1710 REMARK 3 L13: -0.8673 L23: -0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.1961 S13: -0.0397 REMARK 3 S21: -0.0268 S22: -0.1611 S23: -0.4912 REMARK 3 S31: 0.0115 S32: 0.2737 S33: -0.1387 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 941 THROUGH 944 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7960 10.2914 -16.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.4026 T22: 0.8373 REMARK 3 T33: 1.3807 T12: -0.1397 REMARK 3 T13: -0.0085 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.2286 L22: 0.2871 REMARK 3 L33: 0.9532 L12: -0.7861 REMARK 3 L13: 0.2029 L23: -0.3494 REMARK 3 S TENSOR REMARK 3 S11: 0.1454 S12: 0.0179 S13: 0.3241 REMARK 3 S21: -0.2040 S22: 0.3164 S23: -0.4826 REMARK 3 S31: -0.4210 S32: 1.2726 S33: -0.3477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575 REMARK 200 STARTING MODEL: 5C0V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CACODYLATE TRIHYDRATE PH REMARK 280 6.5, 30% W/V POLYETHYLENE GLYCOL 4,000 (#25 INDEX-116), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.98100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 785 REMARK 465 HIS A 786 REMARK 465 SER A 787 REMARK 465 GLY A 788 REMARK 465 GLY A 789 REMARK 465 GLY A 790 REMARK 465 GLY A 791 REMARK 465 GLY A 792 REMARK 465 GLY A 793 REMARK 465 ASN A 806 REMARK 465 ARG A 942 REMARK 465 ARG A 943 REMARK 465 LEU A 944 REMARK 465 GLU A 945 REMARK 465 ASP A 946 REMARK 465 GLY B 785 REMARK 465 HIS B 786 REMARK 465 SER B 787 REMARK 465 GLY B 788 REMARK 465 GLY B 789 REMARK 465 GLY B 790 REMARK 465 GLY B 791 REMARK 465 GLY B 792 REMARK 465 GLY B 793 REMARK 465 LYS B 926 REMARK 465 ASN B 927 REMARK 465 ARG B 942 REMARK 465 GLU B 945 REMARK 465 ASP B 946 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 804 CG CD CE NZ REMARK 470 GLU A 805 CG CD OE1 OE2 REMARK 470 GLN A 810 CG CD OE1 NE2 REMARK 470 HIS A 811 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 825 CG CD CE NZ REMARK 470 LYS A 921 CG CD CE NZ REMARK 470 LYS A 940 CG CD CE NZ REMARK 470 LYS B 887 CG CD CE NZ REMARK 470 LYS B 888 CG CD CE NZ REMARK 470 LYS B 924 CG CD CE NZ REMARK 470 LYS B 940 CG CD CE NZ REMARK 470 PHE B 941 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 943 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1201 O HOH A 1231 2545 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 91P B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V7C RELATED DB: PDB DBREF 5V87 A 796 946 UNP Q6PKG0 LARP1_HUMAN 873 1023 DBREF 5V87 B 796 946 UNP Q6PKG0 LARP1_HUMAN 873 1023 SEQADV 5V87 GLY A 785 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 HIS A 786 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 SER A 787 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 788 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 789 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 790 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 791 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 792 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY A 793 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 HIS A 794 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 MET A 795 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 785 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 HIS B 786 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 SER B 787 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 788 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 789 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 790 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 791 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 792 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 GLY B 793 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 HIS B 794 UNP Q6PKG0 EXPRESSION TAG SEQADV 5V87 MET B 795 UNP Q6PKG0 EXPRESSION TAG SEQRES 1 A 162 GLY HIS SER GLY GLY GLY GLY GLY GLY HIS MET GLN HIS SEQRES 2 A 162 PRO SER HIS GLU LEU LEU LYS GLU ASN GLY PHE THR GLN SEQRES 3 A 162 HIS VAL TYR HIS LYS TYR ARG ARG ARG CYS LEU ASN GLU SEQRES 4 A 162 ARG LYS ARG LEU GLY ILE GLY GLN SER GLN GLU MET ASN SEQRES 5 A 162 THR LEU PHE ARG PHE TRP SER PHE PHE LEU ARG ASP HIS SEQRES 6 A 162 PHE ASN LYS LYS MET TYR GLU GLU PHE LYS GLN LEU ALA SEQRES 7 A 162 LEU GLU ASP ALA LYS GLU GLY TYR ARG TYR GLY LEU GLU SEQRES 8 A 162 CYS LEU PHE ARG TYR TYR SER TYR GLY LEU GLU LYS LYS SEQRES 9 A 162 PHE ARG LEU ASP ILE PHE LYS ASP PHE GLN GLU GLU THR SEQRES 10 A 162 VAL LYS ASP TYR GLU ALA GLY GLN LEU TYR GLY LEU GLU SEQRES 11 A 162 LYS PHE TRP ALA PHE LEU LYS TYR SER LYS ALA LYS ASN SEQRES 12 A 162 LEU ASP ILE ASP PRO LYS LEU GLN GLU TYR LEU GLY LYS SEQRES 13 A 162 PHE ARG ARG LEU GLU ASP SEQRES 1 B 162 GLY HIS SER GLY GLY GLY GLY GLY GLY HIS MET GLN HIS SEQRES 2 B 162 PRO SER HIS GLU LEU LEU LYS GLU ASN GLY PHE THR GLN SEQRES 3 B 162 HIS VAL TYR HIS LYS TYR ARG ARG ARG CYS LEU ASN GLU SEQRES 4 B 162 ARG LYS ARG LEU GLY ILE GLY GLN SER GLN GLU MET ASN SEQRES 5 B 162 THR LEU PHE ARG PHE TRP SER PHE PHE LEU ARG ASP HIS SEQRES 6 B 162 PHE ASN LYS LYS MET TYR GLU GLU PHE LYS GLN LEU ALA SEQRES 7 B 162 LEU GLU ASP ALA LYS GLU GLY TYR ARG TYR GLY LEU GLU SEQRES 8 B 162 CYS LEU PHE ARG TYR TYR SER TYR GLY LEU GLU LYS LYS SEQRES 9 B 162 PHE ARG LEU ASP ILE PHE LYS ASP PHE GLN GLU GLU THR SEQRES 10 B 162 VAL LYS ASP TYR GLU ALA GLY GLN LEU TYR GLY LEU GLU SEQRES 11 B 162 LYS PHE TRP ALA PHE LEU LYS TYR SER LYS ALA LYS ASN SEQRES 12 B 162 LEU ASP ILE ASP PRO LYS LEU GLN GLU TYR LEU GLY LYS SEQRES 13 B 162 PHE ARG ARG LEU GLU ASP HET MGT A1001 49 HET 91P B1001 76 HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE HETNAM 91P [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6- HETNAM 2 91P OXIDANYLIDENE-1~{H}-PURIN-9-IUM-9-YL)-3,4- HETNAM 3 91P BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 4 91P [[(2~{R},3~{S},4~{R},5~{R})-5-(4-AZANYL-2- HETNAM 5 91P OXIDANYLIDENE-PYRIMIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN- HETNAM 6 91P 2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HYDROGEN PHOSPHATE HETSYN 91P DINUCLEOTIDE TRIPHOSPHATE CAP ANALOG M7GPPPC FORMUL 3 MGT C11 H20 N5 O14 P3 FORMUL 4 91P C20 H30 N8 O18 P3 1+ FORMUL 5 HOH *224(H2 O) HELIX 1 AA1 HIS A 797 LYS A 804 1 8 HELIX 2 AA2 THR A 809 GLY A 828 1 20 HELIX 3 AA3 SER A 832 HIS A 849 1 18 HELIX 4 AA4 ASN A 851 GLY A 869 1 19 HELIX 5 AA5 ARG A 871 LYS A 888 1 18 HELIX 6 AA6 ARG A 890 ALA A 907 1 18 HELIX 7 AA7 LEU A 910 SER A 923 1 14 HELIX 8 AA8 ASP A 931 PHE A 941 1 11 HELIX 9 AA9 HIS B 797 LYS B 804 1 8 HELIX 10 AB1 THR B 809 GLY B 828 1 20 HELIX 11 AB2 SER B 832 HIS B 849 1 18 HELIX 12 AB3 ASN B 851 GLU B 868 1 18 HELIX 13 AB4 ARG B 871 LYS B 888 1 18 HELIX 14 AB5 ARG B 890 ALA B 907 1 18 HELIX 15 AB6 LEU B 910 SER B 923 1 14 HELIX 16 AB7 ASP B 931 GLY B 939 1 9 SITE 1 AC1 11 SER A 882 TYR A 883 GLU A 886 GLU A 914 SITE 2 AC1 11 LYS A 915 ALA A 918 TYR A 922 HOH A1103 SITE 3 AC1 11 HOH A1105 HOH A1126 91P B1001 SITE 1 AC2 18 ARG A 879 TYR A 883 TYR A 911 GLU A 914 SITE 2 AC2 18 LYS A 915 MGT A1001 ARG B 847 ARG B 879 SITE 3 AC2 18 SER B 882 TYR B 883 GLU B 886 GLU B 914 SITE 4 AC2 18 LYS B 915 ALA B 918 TYR B 922 HOH B1106 SITE 5 AC2 18 HOH B1128 HOH B1144 CRYST1 47.959 59.962 60.321 90.00 100.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020851 0.000000 0.003922 0.00000 SCALE2 0.000000 0.016677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016869 0.00000