HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAR-17 5V8O TITLE DISCOVERY OF A HIGH AFFINITY INHIBITOR OF CGAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 5 1; COMPND 6 EC: 2.7.7.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CGAS, STING, CGAMP, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.HALL REVDAT 3 06-MAR-24 5V8O 1 REMARK REVDAT 2 04-OCT-17 5V8O 1 JRNL REVDAT 1 27-SEP-17 5V8O 0 JRNL AUTH J.HALL,A.BRAULT,F.VINCENT,S.WENG,H.WANG,D.DUMLAO, JRNL AUTH 2 A.AULABAUGH,D.AIVAZIAN,D.CASTRO,M.CHEN,J.CULP,K.DOWER, JRNL AUTH 3 J.GARDNER,S.HAWRYLIK,D.GOLENBOCK,D.HEPWORTH,M.HORN,L.JONES, JRNL AUTH 4 P.JONES,E.LATZ,J.LI,L.L.LIN,W.LIN,D.LIN,F.LOVERING, JRNL AUTH 5 N.NILJANSKUL,R.NISTLER,B.PIERCE,O.PLOTNIKOVA,D.SCHMITT, JRNL AUTH 6 S.SHANKER,J.SMITH,W.SNYDER,T.SUBASHI,J.TRUJILLO,E.TYMINSKI, JRNL AUTH 7 G.WANG,J.WONG,B.LEFKER,L.DAKIN,K.LEACH JRNL TITL DISCOVERY OF PF-06928215 AS A HIGH AFFINITY INHIBITOR OF JRNL TITL 2 CGAS ENABLED BY A NOVEL FLUORESCENCE POLARIZATION ASSAY. JRNL REF PLOS ONE V. 12 84843 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28934246 JRNL DOI 10.1371/JOURNAL.PONE.0184843 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 15601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 731 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2869 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2360 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2720 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 118.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49060 REMARK 3 B22 (A**2) : -8.68710 REMARK 3 B33 (A**2) : 7.19650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05090 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.453 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10572 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 19008 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2272 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 123 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1658 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 10572 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 734 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10885 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 46.3155 -1.7615 -20.6918 REMARK 3 T TENSOR REMARK 3 T11: -0.1823 T22: -0.0572 REMARK 3 T33: -0.1680 T12: 0.0863 REMARK 3 T13: 0.0529 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.2219 L22: 2.6122 REMARK 3 L33: 2.1330 L12: 0.6335 REMARK 3 L13: -0.1830 L23: 0.4097 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.0078 S13: 0.0058 REMARK 3 S21: 0.0391 S22: -0.1237 S23: 0.3964 REMARK 3 S31: 0.0593 S32: -0.7209 S33: 0.0397 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 47.0631 -11.1571 -62.8567 REMARK 3 T TENSOR REMARK 3 T11: -0.2545 T22: 0.0229 REMARK 3 T33: -0.0811 T12: -0.0416 REMARK 3 T13: -0.0159 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 2.1806 L22: 2.6834 REMARK 3 L33: 3.0990 L12: -0.4888 REMARK 3 L13: -0.0742 L23: 1.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.1466 S13: 0.1096 REMARK 3 S21: -0.1672 S22: -0.2183 S23: 0.6901 REMARK 3 S31: -0.2565 S32: -1.0484 S33: 0.1641 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15629 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 52.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CONCENTRATED TO 6 MG/ML, REMARK 280 AND THEN MIXED AT A 2:1 RATIO WITH PEG 3350 (18-20% V/V), 0.2 M REMARK 280 AMMONIUM CITRATE (PH 7) IN A SITTING DROP WELL AT 277 K. REMARK 280 CRYOPROTECTANT WAS MADE USING MOTHER LIQUOR AT A FINAL REMARK 280 CONCENTRATION OF 23% PEG 3350., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 108.36450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 108.36450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 214 REMARK 465 TYR A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 PRO A 306 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 TYR B 214 REMARK 465 TYR B 215 REMARK 465 GLU B 216 REMARK 465 HIS B 217 REMARK 465 VAL B 218 REMARK 465 ALA B 364 REMARK 465 LYS B 365 REMARK 465 GLU B 366 REMARK 465 GLY B 367 REMARK 465 ASN B 368 REMARK 465 GLY B 369 REMARK 465 PHE B 370 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 MET A 185 CG SD CE REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 THR A 211 OG1 CG2 REMARK 470 SER A 213 OG REMARK 470 HIS A 217 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 218 CG1 CG2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ILE A 220 CG1 CG2 CD1 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ILE A 284 CG1 CG2 CD1 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 ASP A 431 CG OD1 OD2 REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 PHE A 522 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 MET B 185 CG SD CE REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 HIS B 192 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 195 CG CD1 CD2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 197 CG CD1 CD2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 THR B 211 OG1 CG2 REMARK 470 SER B 213 OG REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 ILE B 220 CG1 CG2 CD1 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 ASN B 244 CG OD1 ND2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ARG B 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 ILE B 284 CG1 CG2 CD1 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 THR B 294 OG1 CG2 REMARK 470 ASP B 295 CG OD1 OD2 REMARK 470 MET B 298 CG SD CE REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 SER B 305 OG REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 ASP B 319 CG OD1 OD2 REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 LYS B 362 CG CD CE NZ REMARK 470 HIS B 363 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 418 CG CD OE1 OE2 REMARK 470 GLU B 422 CG CD OE1 OE2 REMARK 470 ASP B 426 CG OD1 OD2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 ASP B 431 CG OD1 OD2 REMARK 470 LYS B 432 CG CD CE NZ REMARK 470 ARG B 499 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 506 CG CD CE NZ REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 209 CB - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASN B 210 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 203 38.83 -96.28 REMARK 500 THR A 211 -81.30 -111.72 REMARK 500 ALA A 222 77.11 -161.00 REMARK 500 PRO A 235 -70.10 -70.53 REMARK 500 SER A 243 44.40 39.26 REMARK 500 GLU A 267 65.64 -109.06 REMARK 500 ARG A 300 161.28 -48.32 REMARK 500 LYS A 315 -47.91 -132.54 REMARK 500 SER A 345 155.05 93.11 REMARK 500 PRO A 356 -177.84 -69.57 REMARK 500 GLU A 372 43.16 -81.16 REMARK 500 GLU A 373 11.13 -144.14 REMARK 500 GLU A 521 53.07 26.62 REMARK 500 PHE B 203 38.71 -96.17 REMARK 500 ALA B 222 79.53 -161.49 REMARK 500 SER B 243 44.22 39.28 REMARK 500 GLU B 267 65.64 -109.01 REMARK 500 ARG B 302 -54.69 -128.67 REMARK 500 LYS B 315 -47.78 -132.77 REMARK 500 TRP B 343 -66.14 -109.79 REMARK 500 SER B 345 154.96 93.34 REMARK 500 PRO B 356 -177.73 -69.93 REMARK 500 GLU B 372 44.63 -80.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 119.3 REMARK 620 3 CYS A 397 SG 104.6 120.7 REMARK 620 4 CYS A 404 SG 96.7 108.0 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 118.5 REMARK 620 3 CYS B 397 SG 106.6 120.2 REMARK 620 4 CYS B 404 SG 96.2 107.0 104.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZM A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZM B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZM B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V8H RELATED DB: PDB REMARK 900 RELATED ID: 5V8J RELATED DB: PDB REMARK 900 RELATED ID: 5V8N RELATED DB: PDB DBREF 5V8O A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 5V8O B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQRES 1 A 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS SEQRES 2 A 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL SEQRES 3 A 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS SEQRES 4 A 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY SEQRES 5 A 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU SEQRES 6 A 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN SEQRES 7 A 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL SEQRES 8 A 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN SEQRES 9 A 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU SEQRES 10 A 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP SEQRES 11 A 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY SEQRES 12 A 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE SEQRES 13 A 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER SEQRES 14 A 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN SEQRES 15 A 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS SEQRES 16 A 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN SEQRES 17 A 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS SEQRES 18 A 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS SEQRES 19 A 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS SEQRES 20 A 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU SEQRES 21 A 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE SEQRES 22 A 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS SEQRES 23 A 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP SEQRES 24 A 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU SEQRES 25 A 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE SEQRES 26 A 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS SEQRES 27 A 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS SEQRES 2 B 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL SEQRES 3 B 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS SEQRES 4 B 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY SEQRES 5 B 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU SEQRES 6 B 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN SEQRES 7 B 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL SEQRES 8 B 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN SEQRES 9 B 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU SEQRES 10 B 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP SEQRES 11 B 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY SEQRES 12 B 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE SEQRES 13 B 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER SEQRES 14 B 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN SEQRES 15 B 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS SEQRES 16 B 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN SEQRES 17 B 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS SEQRES 18 B 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS SEQRES 19 B 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS SEQRES 20 B 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU SEQRES 21 B 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE SEQRES 22 B 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS SEQRES 23 B 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP SEQRES 24 B 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU SEQRES 25 B 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE SEQRES 26 B 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS SEQRES 27 B 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU SEQRES 28 B 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET 8ZM A 602 23 HET ZN B 601 1 HET 8ZM B 602 16 HET 8ZM B 603 16 HETNAM ZN ZINC ION HETNAM 8ZM 5-PHENYLTETRAZOLO[1,5-A]PYRIMIDIN-7-OL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 8ZM 3(C10 H7 N5 O) FORMUL 8 HOH *25(H2 O) HELIX 1 AA1 ALA A 162 LEU A 174 1 13 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 LEU A 262 LEU A 266 5 5 HELIX 4 AA4 SER A 272 ILE A 291 1 20 HELIX 5 AA5 PRO A 331 GLN A 335 5 5 HELIX 6 AA6 SER A 345 LEU A 354 1 10 HELIX 7 AA7 PHE A 379 ASN A 389 1 11 HELIX 8 AA8 ASN A 399 LYS A 403 5 5 HELIX 9 AA9 CYS A 405 PHE A 424 1 20 HELIX 10 AB1 LYS A 425 PHE A 433 5 9 HELIX 11 AB2 SER A 434 ASN A 449 1 16 HELIX 12 AB3 GLN A 451 LYS A 458 5 8 HELIX 13 AB4 ASP A 459 GLU A 478 1 20 HELIX 14 AB5 ASP A 497 ASN A 514 1 18 HELIX 15 AB6 GLU A 515 ASP A 520 5 6 HELIX 16 AB7 ALA B 162 LEU B 174 1 13 HELIX 17 AB8 SER B 175 LYS B 198 1 24 HELIX 18 AB9 LEU B 262 LEU B 266 5 5 HELIX 19 AC1 SER B 272 ILE B 291 1 20 HELIX 20 AC2 PRO B 331 GLN B 335 5 5 HELIX 21 AC3 SER B 345 LEU B 354 1 10 HELIX 22 AC4 PHE B 379 ASN B 389 1 11 HELIX 23 AC5 ASN B 399 LYS B 403 5 5 HELIX 24 AC6 CYS B 405 PHE B 424 1 20 HELIX 25 AC7 LYS B 425 PHE B 433 5 9 HELIX 26 AC8 SER B 434 ASN B 449 1 16 HELIX 27 AC9 GLN B 451 LYS B 458 5 8 HELIX 28 AD1 ASP B 459 GLU B 478 1 20 HELIX 29 AD2 ASP B 497 ASN B 514 1 18 SHEET 1 AA1 7 VAL A 206 LEU A 208 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O ASP A 319 N VAL A 228 SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O LEU A 359 N LEU A 324 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 AA2 5 VAL A 206 LEU A 208 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O ASP A 319 N VAL A 228 SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N VAL A 308 O ILE A 320 SHEET 5 AA2 5 VAL A 296 LYS A 299 -1 N LYS A 299 O THR A 309 SHEET 1 AA3 7 VAL B 206 LEU B 208 0 SHEET 2 AA3 7 GLU B 225 GLU B 233 -1 O LYS B 231 N GLY B 207 SHEET 3 AA3 7 ILE B 316 SER B 326 1 O ASP B 319 N VAL B 228 SHEET 4 AA3 7 PHE B 357 PRO B 361 -1 O LEU B 359 N LEU B 324 SHEET 5 AA3 7 TRP B 375 SER B 378 -1 O ARG B 376 N VAL B 360 SHEET 6 AA3 7 TYR B 248 PHE B 253 -1 N TYR B 249 O TRP B 375 SHEET 7 AA3 7 ILE B 237 GLU B 241 -1 N GLN B 238 O LYS B 252 SHEET 1 AA4 5 VAL B 206 LEU B 208 0 SHEET 2 AA4 5 GLU B 225 GLU B 233 -1 O LYS B 231 N GLY B 207 SHEET 3 AA4 5 ILE B 316 SER B 326 1 O ASP B 319 N VAL B 228 SHEET 4 AA4 5 VAL B 308 ILE B 312 -1 N VAL B 308 O ILE B 320 SHEET 5 AA4 5 VAL B 296 LYS B 299 -1 N LYS B 299 O THR B 309 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.15 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.40 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.23 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.34 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.11 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.44 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.19 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.37 CISPEP 1 PRO A 257 LYS A 258 0 -3.77 CISPEP 2 PRO B 257 LYS B 258 0 -2.74 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 SITE 1 AC2 7 ARG A 376 LEU A 377 TYR A 436 ASN A 482 SITE 2 AC2 7 PHE A 488 LEU A 490 HOH A 709 SITE 1 AC3 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC4 7 ALA B 247 ARG B 376 LEU B 377 TYR B 436 SITE 2 AC4 7 ASN B 482 PHE B 488 LEU B 490 SITE 1 AC5 5 LEU A 311 ARG B 423 LYS B 506 GLN B 507 SITE 2 AC5 5 TYR B 510 CRYST1 216.729 48.060 89.488 90.00 110.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004614 0.000000 0.001739 0.00000 SCALE2 0.000000 0.020807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011942 0.00000