HEADER ISOMERASE 22-MAR-17 5V8T TITLE CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE TITLE 2 FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF354 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3,PEPTIDYL-PROLYL CIS-TRANS COMPND 3 ISOMERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 13-97; UNP RESIDUES 2-113; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C), BURKHOLDERIA PSEUDOMALLEI; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292, 28450; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SMT3, YDR510W, D9719.15, FBP_2, DP46_4351, DP49_3058, SOURCE 8 ERS012314_03208, SY87_03945; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS BURKHOLDERIA, PEPTIDYL, PROLINE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.D.LORIMER,D.M.DRANOW,F.SEUFERT,J.ABENDROTH,U.HOLZGRABE REVDAT 3 04-OCT-23 5V8T 1 LINK REVDAT 2 15-JAN-20 5V8T 1 REMARK REVDAT 1 14-MAR-18 5V8T 0 JRNL AUTH D.D.LORIMER,D.M.DRANOW,F.SEUFERT,J.ABENDROTH,U.HOLZGRABE JRNL TITL CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS JRNL TITL 2 ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH JRNL TITL 3 SF354 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9284 - 5.0595 1.00 1625 128 0.1723 0.1983 REMARK 3 2 5.0595 - 4.0164 1.00 1524 140 0.1417 0.1834 REMARK 3 3 4.0164 - 3.5089 1.00 1507 169 0.1615 0.1866 REMARK 3 4 3.5089 - 3.1881 1.00 1498 134 0.1742 0.2096 REMARK 3 5 3.1881 - 2.9597 1.00 1493 153 0.1931 0.2551 REMARK 3 6 2.9597 - 2.7852 1.00 1501 140 0.2001 0.2476 REMARK 3 7 2.7852 - 2.6457 1.00 1498 140 0.2125 0.2360 REMARK 3 8 2.6457 - 2.5306 1.00 1521 104 0.2045 0.2428 REMARK 3 9 2.5306 - 2.4331 1.00 1494 137 0.2023 0.2297 REMARK 3 10 2.4331 - 2.3492 1.00 1492 147 0.2106 0.2228 REMARK 3 11 2.3492 - 2.2757 1.00 1497 133 0.2095 0.2334 REMARK 3 12 2.2757 - 2.2107 1.00 1458 143 0.2152 0.2358 REMARK 3 13 2.2107 - 2.1525 1.00 1464 159 0.2093 0.2871 REMARK 3 14 2.1525 - 2.1000 0.99 1498 135 0.2174 0.2881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2985 REMARK 3 ANGLE : 0.603 4032 REMARK 3 CHIRALITY : 0.046 440 REMARK 3 PLANARITY : 0.003 526 REMARK 3 DIHEDRAL : 19.161 1751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -77 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A):-121.0258 -13.0319 125.1036 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.1871 REMARK 3 T33: 0.1451 T12: 0.0166 REMARK 3 T13: 0.0359 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.0380 L22: 3.6815 REMARK 3 L33: 1.8931 L12: -0.3620 REMARK 3 L13: -0.5486 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.1113 S13: 0.0980 REMARK 3 S21: -0.3097 S22: -0.0307 S23: -0.3478 REMARK 3 S31: 0.0345 S32: 0.0912 S33: -0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A):-123.5168 -29.5868 145.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0709 REMARK 3 T33: 0.1035 T12: -0.0038 REMARK 3 T13: 0.0153 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.3971 L22: 1.3392 REMARK 3 L33: 0.8772 L12: -0.0096 REMARK 3 L13: 0.0634 L23: -0.0415 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.0121 S13: -0.0513 REMARK 3 S21: -0.0018 S22: 0.0221 S23: -0.0450 REMARK 3 S31: 0.0158 S32: 0.0085 S33: 0.0054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -77 THROUGH -5 ) REMARK 3 ORIGIN FOR THE GROUP (A):-122.9053 -39.0476 190.8004 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.2275 REMARK 3 T33: 0.1709 T12: 0.0049 REMARK 3 T13: -0.0112 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 4.8568 L22: 3.9171 REMARK 3 L33: 5.6806 L12: 0.7830 REMARK 3 L13: -0.1503 L23: 0.4054 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.2185 S13: 0.1843 REMARK 3 S21: 0.5739 S22: -0.3040 S23: -0.2191 REMARK 3 S31: -0.2539 S32: -0.2411 S33: 0.1079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A):-123.6998 -19.4539 170.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.0938 REMARK 3 T33: 0.1036 T12: 0.0027 REMARK 3 T13: -0.0028 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.3890 L22: 1.8883 REMARK 3 L33: 2.0870 L12: 0.1570 REMARK 3 L13: -0.3150 L23: 0.0700 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.1503 S13: -0.0666 REMARK 3 S21: 0.0408 S22: 0.0196 S23: -0.0189 REMARK 3 S31: 0.0385 S32: -0.0119 S33: -0.0710 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -76 THROUGH -65 OR REMARK 3 (RESID -64 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID -63 REMARK 3 THROUGH -58 OR (RESID -57 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID -56 THROUGH -41 OR (RESID -40 REMARK 3 THROUGH -37 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID - REMARK 3 36 THROUGH -35 OR (RESID -34 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID -33 THROUGH -24 OR (RESID -23 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID -22 THROUGH -17 REMARK 3 OR (RESID -16 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID - REMARK 3 15 OR (RESID -14 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID -13 THROUGH -11 OR (RESID -10 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID -9 THROUGH -6 OR REMARK 3 (RESID -5 THROUGH -2 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID -1 THROUGH 0 OR (RESID 1 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB )) OR RESID 2 THROUGH 6 OR (RESID 7 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 8 THROUGH 40 OR REMARK 3 (RESID 41 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 42 REMARK 3 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 THROUGH 113)) REMARK 3 SELECTION : (CHAIN B AND (RESID -76 THROUGH -40 OR REMARK 3 (RESID -39 THROUGH -37 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID -36 THROUGH 113)) REMARK 3 ATOM PAIRS NUMBER : 1650 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.915 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.099 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.77 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: 3UF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00130.A.D21 (CID4597, SMT TAG REMARK 280 ON, BATCH 776103) AT 10.37MG/ML (IN 25MM TRIS, PH8.0, 200MM NACL, REMARK 280 1% GLYCEROL, 1MM TCEP BUFFER) WAS INCUBATED WITH 2MM SF354 REMARK 280 (BSI5672). CRYSTALS WERE PRODUCED BY SITTING DROP VAPOR REMARK 280 DIFFUSION WITH AN EQUAL VOLUME COMBINATION OF THE PROTEIN/LIGAND REMARK 280 COMPLEX AND A SOLUTION CONTAINING 24.55% (W/V) PEG-3350, 50 MM REMARK 280 AMMONIUM FORMATE (JCSG_A8 OPT SCREEN D7) AND CRYOPROTECTED WITH REMARK 280 15% ETHYLENE GLYCOL. CRYSTAL TRACKING ID 274545D7, UXE3-7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 HIS A -91 REMARK 465 HIS A -90 REMARK 465 HIS A -89 REMARK 465 HIS A -88 REMARK 465 SER A -87 REMARK 465 GLY A -86 REMARK 465 GLU A -85 REMARK 465 VAL A -84 REMARK 465 LYS A -83 REMARK 465 PRO A -82 REMARK 465 GLU A -81 REMARK 465 VAL A -80 REMARK 465 LYS A -79 REMARK 465 PRO A -78 REMARK 465 GLY B -94 REMARK 465 HIS B -93 REMARK 465 HIS B -92 REMARK 465 HIS B -91 REMARK 465 HIS B -90 REMARK 465 HIS B -89 REMARK 465 HIS B -88 REMARK 465 SER B -87 REMARK 465 GLY B -86 REMARK 465 GLU B -85 REMARK 465 VAL B -84 REMARK 465 LYS B -83 REMARK 465 PRO B -82 REMARK 465 GLU B -81 REMARK 465 VAL B -80 REMARK 465 LYS B -79 REMARK 465 PRO B -78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -77 CG CD OE1 OE2 REMARK 470 GLU A -39 CG CD OE1 OE2 REMARK 470 MET A -38 CG SD CE REMARK 470 ASP A -30 CG OD1 OD2 REMARK 470 GLU A -8 CG CD OE1 OE2 REMARK 470 GLU B -77 CG CD OE1 OE2 REMARK 470 GLU B -64 CG CD OE1 OE2 REMARK 470 LYS B -57 CG CD CE NZ REMARK 470 LYS B -40 CG CD CE NZ REMARK 470 ASP B -37 CG OD1 OD2 REMARK 470 ARG B -34 CG CD NE CZ NH1 NH2 REMARK 470 ASP B -30 CG OD1 OD2 REMARK 470 ASP B -23 CG OD1 OD2 REMARK 470 ASP B -16 CG OD1 OD2 REMARK 470 GLU B -14 CG CD OE1 OE2 REMARK 470 ILE B -10 CG1 CG2 CD1 REMARK 470 GLU B -8 CG CD OE1 OE2 REMARK 470 ARG B -5 CG CD NE CZ NH1 NH2 REMARK 470 GLU B -4 CG CD OE1 OE2 REMARK 470 GLN B -3 CG CD OE1 NE2 REMARK 470 ILE B -2 CG1 CG2 CD1 REMARK 470 SER B 1 OG REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -36 77.21 54.27 REMARK 500 VAL A 97 -39.13 -137.53 REMARK 500 VAL B 97 -40.41 -136.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 51 OD2 47.5 REMARK 620 3 PRO A 52 O 96.9 94.8 REMARK 620 4 HOH A 334 O 74.2 121.6 89.7 REMARK 620 5 ASP B 51 OD1 152.0 160.5 84.3 77.9 REMARK 620 6 PRO B 52 O 85.9 83.3 174.2 96.0 95.7 REMARK 620 7 HOH B 336 O 114.1 66.6 87.7 171.6 93.9 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZV B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 DBREF 5V8T A -85 -1 UNP Q12306 SMT3_YEAST 13 97 DBREF1 5V8T A 2 113 UNP A0A069BB90_BURPE DBREF2 5V8T A A0A069BB90 2 113 DBREF 5V8T B -85 -1 UNP Q12306 SMT3_YEAST 13 97 DBREF1 5V8T B 2 113 UNP A0A069BB90_BURPE DBREF2 5V8T B A0A069BB90 2 113 SEQADV 5V8T GLY A -94 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -93 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -92 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -91 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -90 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -89 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS A -88 UNP Q12306 EXPRESSION TAG SEQADV 5V8T SER A -87 UNP Q12306 EXPRESSION TAG SEQADV 5V8T GLY A -86 UNP Q12306 EXPRESSION TAG SEQADV 5V8T GLY A 0 UNP Q12306 LINKER SEQADV 5V8T SER A 1 UNP Q12306 LINKER SEQADV 5V8T GLY B -94 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -93 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -92 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -91 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -90 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -89 UNP Q12306 EXPRESSION TAG SEQADV 5V8T HIS B -88 UNP Q12306 EXPRESSION TAG SEQADV 5V8T SER B -87 UNP Q12306 EXPRESSION TAG SEQADV 5V8T GLY B -86 UNP Q12306 EXPRESSION TAG SEQADV 5V8T GLY B 0 UNP Q12306 LINKER SEQADV 5V8T SER B 1 UNP Q12306 LINKER SEQRES 1 A 208 GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS PRO SEQRES 2 A 208 GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SER SEQRES 3 A 208 ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS THR SEQRES 4 A 208 THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS ARG SEQRES 5 A 208 GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR ASP SEQRES 6 A 208 GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP LEU SEQRES 7 A 208 ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG GLU SEQRES 8 A 208 GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER GLY SEQRES 9 A 208 LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA GLU SEQRES 10 A 208 ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR GLY SEQRES 11 A 208 TRP LEU THR ASP GLY GLN LYS PHE ASP SER SER LYS ASP SEQRES 12 A 208 ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY MET SEQRES 13 A 208 VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET LYS SEQRES 14 A 208 VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN LEU SEQRES 15 A 208 GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO PRO SEQRES 16 A 208 ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP VAL SEQRES 1 B 208 GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS PRO SEQRES 2 B 208 GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SER SEQRES 3 B 208 ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS THR SEQRES 4 B 208 THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS ARG SEQRES 5 B 208 GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR ASP SEQRES 6 B 208 GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP LEU SEQRES 7 B 208 ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG GLU SEQRES 8 B 208 GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER GLY SEQRES 9 B 208 LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA GLU SEQRES 10 B 208 ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR GLY SEQRES 11 B 208 TRP LEU THR ASP GLY GLN LYS PHE ASP SER SER LYS ASP SEQRES 12 B 208 ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY MET SEQRES 13 B 208 VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET LYS SEQRES 14 B 208 VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN LEU SEQRES 15 B 208 GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO PRO SEQRES 16 B 208 ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP VAL HET 8ZV A 201 40 HET FMT A 202 3 HET 8ZV B 201 40 HET MG B 202 1 HETNAM 8ZV 2-{[3,5-BIS(2-METHOXYETHOXY)BENZENE-1- HETNAM 2 8ZV CARBONYL]AMINO}ETHYL (2S)-1-(BENZYLSULFONYL) HETNAM 3 8ZV PIPERIDINE-2-CARBOXYLATE HETNAM FMT FORMIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 8ZV 2(C28 H38 N2 O9 S) FORMUL 4 FMT C H2 O2 FORMUL 6 MG MG 2+ FORMUL 7 HOH *267(H2 O) HELIX 1 AA1 LEU A -53 GLY A -41 1 13 HELIX 2 AA2 LYS A 47 ASN A 50 5 4 HELIX 3 AA3 ILE A 63 GLN A 71 1 9 HELIX 4 AA4 PRO A 84 GLY A 88 5 5 HELIX 5 AA5 LEU B -53 GLN B -42 1 12 HELIX 6 AA6 LYS B 47 ASN B 50 5 4 HELIX 7 AA7 ILE B 63 VAL B 70 1 8 HELIX 8 AA8 PRO B 84 GLY B 88 5 5 SHEET 1 AA1 5 GLU A -64 LYS A -58 0 SHEET 2 AA1 5 HIS A -75 SER A -69 -1 N LEU A -72 O PHE A -61 SHEET 3 AA1 5 ASP A -11 ARG A -5 1 O ILE A -9 N LYS A -71 SHEET 4 AA1 5 LEU A -35 TYR A -31 -1 N LEU A -32 O GLU A -8 SHEET 5 AA1 5 ILE A -28 ARG A -27 -1 O ILE A -28 N TYR A -31 SHEET 1 AA2 6 VAL A 4 THR A 5 0 SHEET 2 AA2 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 AA2 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 AA2 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 AA2 6 THR A 28 LEU A 37 -1 N TRP A 36 O VAL A 105 SHEET 6 AA2 6 LYS A 42 SER A 45 -1 O ASP A 44 N GLY A 35 SHEET 1 AA3 6 VAL A 4 THR A 5 0 SHEET 2 AA3 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 AA3 6 VAL A 78 ILE A 83 -1 O THR A 82 N LYS A 11 SHEET 4 AA3 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 AA3 6 THR A 28 LEU A 37 -1 N TRP A 36 O VAL A 105 SHEET 6 AA3 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SHEET 1 AA4 5 GLU B -64 LYS B -58 0 SHEET 2 AA4 5 HIS B -75 SER B -69 -1 N LEU B -72 O PHE B -61 SHEET 3 AA4 5 ASP B -11 ARG B -5 1 O ALA B -7 N SER B -69 SHEET 4 AA4 5 LEU B -35 TYR B -31 -1 N LEU B -32 O GLU B -8 SHEET 5 AA4 5 ILE B -28 ARG B -27 -1 O ILE B -28 N TYR B -31 SHEET 1 AA5 6 VAL B 4 THR B 5 0 SHEET 2 AA5 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 AA5 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 AA5 6 LEU B 104 ASP B 112 -1 O PHE B 106 N LEU B 81 SHEET 5 AA5 6 THR B 28 TRP B 36 -1 N HIS B 32 O GLU B 109 SHEET 6 AA5 6 LYS B 42 SER B 45 -1 O ASP B 44 N GLY B 35 SHEET 1 AA6 6 VAL B 4 THR B 5 0 SHEET 2 AA6 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 AA6 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 AA6 6 LEU B 104 ASP B 112 -1 O PHE B 106 N LEU B 81 SHEET 5 AA6 6 THR B 28 TRP B 36 -1 N HIS B 32 O GLU B 109 SHEET 6 AA6 6 PHE B 53 VAL B 56 -1 O PHE B 53 N VAL B 31 LINK OD1 ASP A 51 MG MG B 202 1555 1555 2.24 LINK OD2 ASP A 51 MG MG B 202 1555 1555 2.96 LINK O PRO A 52 MG MG B 202 1555 1555 2.29 LINK O HOH A 334 MG MG B 202 1555 1555 2.19 LINK OD1 ASP B 51 MG MG B 202 1555 1555 2.13 LINK O PRO B 52 MG MG B 202 1555 1555 2.25 LINK MG MG B 202 O HOH B 336 1555 1555 2.21 SITE 1 AC1 18 TYR A 33 PHE A 43 ASP A 44 ARG A 49 SITE 2 AC1 18 PHE A 53 VAL A 62 ILE A 63 TRP A 66 SITE 3 AC1 18 TYR A 89 ALA A 94 GLY A 95 VAL A 97 SITE 4 AC1 18 PHE A 106 HOH A 426 ALA B 54 PHE B 55 SITE 5 AC1 18 MET B 61 8ZV B 201 SITE 1 AC2 4 PRO A 85 GLN A 86 HOH A 335 HOH A 421 SITE 1 AC3 15 MET A 61 8ZV A 201 TYR B 33 PHE B 43 SITE 2 AC3 15 ASP B 44 PHE B 53 VAL B 62 ILE B 63 SITE 3 AC3 15 TRP B 66 TYR B 89 GLY B 95 VAL B 97 SITE 4 AC3 15 ILE B 98 PHE B 106 HOH B 370 SITE 1 AC4 6 ASP A 51 PRO A 52 HOH A 334 ASP B 51 SITE 2 AC4 6 PRO B 52 HOH B 336 CRYST1 60.640 32.500 99.350 90.00 96.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016491 0.000000 0.001947 0.00000 SCALE2 0.000000 0.030769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010135 0.00000