HEADER HYDROLASE/DNA 23-MAR-17 5V9X TITLE STRUCTURE OF MYCOBACTERIUM SMEGMATIS HELICASE LHR BOUND TO SSDNA AND TITLE 2 AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.13; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SSDNA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: LHR, ERS451418_01790; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 10 ORGANISM_TAXID: 32644 KEYWDS HELICASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ORDONEZ,A.JACEWICZ,R.FERRAO,S.SHUMAN REVDAT 3 06-MAR-24 5V9X 1 LINK REVDAT 2 24-JAN-18 5V9X 1 JRNL REVDAT 1 06-DEC-17 5V9X 0 JRNL AUTH A.EJAZ,H.ORDONEZ,A.JACEWICZ,R.FERRAO,S.SHUMAN JRNL TITL STRUCTURE OF MYCOBACTERIAL 3'-TO-5' RNA:DNA HELICASE LHR JRNL TITL 2 BOUND TO A SSDNA TRACKING STRAND HIGHLIGHTS DISTINCTIVE JRNL TITL 3 FEATURES OF A NOVEL FAMILY OF BACTERIAL HELICASES. JRNL REF NUCLEIC ACIDS RES. V. 46 442 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29165676 JRNL DOI 10.1093/NAR/GKX1163 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7609 - 6.7345 0.99 1717 147 0.1858 0.1986 REMARK 3 2 6.7345 - 5.3480 0.99 1685 146 0.2000 0.2677 REMARK 3 3 5.3480 - 4.6728 1.00 1672 145 0.1718 0.2099 REMARK 3 4 4.6728 - 4.2459 0.99 1655 144 0.1558 0.2165 REMARK 3 5 4.2459 - 3.9417 0.99 1642 142 0.1724 0.2047 REMARK 3 6 3.9417 - 3.7094 1.00 1708 149 0.1837 0.2279 REMARK 3 7 3.7094 - 3.5237 1.00 1648 142 0.1924 0.2710 REMARK 3 8 3.5237 - 3.3704 0.99 1647 143 0.2165 0.2809 REMARK 3 9 3.3704 - 3.2407 0.99 1657 143 0.2277 0.2601 REMARK 3 10 3.2407 - 3.1289 0.99 1658 144 0.2356 0.3314 REMARK 3 11 3.1289 - 3.0311 1.00 1646 142 0.2307 0.2961 REMARK 3 12 3.0311 - 2.9444 0.99 1672 145 0.2510 0.2824 REMARK 3 13 2.9444 - 2.8669 0.99 1633 142 0.2602 0.3553 REMARK 3 14 2.8669 - 2.7970 0.86 1431 124 0.2856 0.3273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6374 REMARK 3 ANGLE : 0.609 8728 REMARK 3 CHIRALITY : 0.044 1012 REMARK 3 PLANARITY : 0.004 1094 REMARK 3 DIHEDRAL : 16.608 2379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9521 -18.6520 14.8211 REMARK 3 T TENSOR REMARK 3 T11: 0.3966 T22: 0.3702 REMARK 3 T33: 0.2932 T12: -0.0201 REMARK 3 T13: 0.0492 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.2591 L22: 1.0475 REMARK 3 L33: 1.3172 L12: -0.2806 REMARK 3 L13: 0.2721 L23: -0.1726 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0963 S13: -0.0058 REMARK 3 S21: 0.0134 S22: -0.0681 S23: 0.0516 REMARK 3 S31: -0.0120 S32: -0.0603 S33: 0.0663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 655 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0805 -39.2654 17.3899 REMARK 3 T TENSOR REMARK 3 T11: 0.6633 T22: 0.5686 REMARK 3 T33: 0.5137 T12: 0.0688 REMARK 3 T13: 0.0126 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 0.6673 L22: 1.1066 REMARK 3 L33: 0.6323 L12: -0.6060 REMARK 3 L13: 0.2026 L23: 0.3603 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: -0.0410 S13: -0.0752 REMARK 3 S21: -0.0154 S22: 0.0050 S23: -0.2389 REMARK 3 S31: 0.4011 S32: 0.0950 S33: 0.0218 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 656 THROUGH 852 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3648 -30.8046 27.9642 REMARK 3 T TENSOR REMARK 3 T11: 0.4849 T22: 0.6289 REMARK 3 T33: 0.3938 T12: 0.0088 REMARK 3 T13: -0.0099 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 1.1856 L22: 4.1145 REMARK 3 L33: 1.3152 L12: -0.3785 REMARK 3 L13: 0.4431 L23: -0.3744 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.2160 S13: 0.0041 REMARK 3 S21: 0.0438 S22: -0.1012 S23: -0.4191 REMARK 3 S31: 0.0206 S32: 0.3074 S33: 0.0906 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2606 -17.3183 9.1016 REMARK 3 T TENSOR REMARK 3 T11: 0.4822 T22: 0.5499 REMARK 3 T33: 0.5532 T12: -0.1426 REMARK 3 T13: -0.0123 T23: 0.0981 REMARK 3 L TENSOR REMARK 3 L11: 4.7860 L22: 4.4212 REMARK 3 L33: 4.6875 L12: -2.9721 REMARK 3 L13: -0.8994 L23: 3.1897 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.1062 S13: 0.2726 REMARK 3 S21: 0.3063 S22: -0.0449 S23: -1.0532 REMARK 3 S31: -0.0023 S32: 0.2428 S33: 0.0918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.797 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21 - 22 % (W/V) PEG3350, 0.2 M NAF, REMARK 280 0.1 M BIS-TRIS PROPANE (PH 7.0 - 7.2), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.73100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.06450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.73100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.06450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 70 REMARK 465 ARG A 71 REMARK 465 GLU A 72 REMARK 465 PRO A 73 REMARK 465 SER A 74 REMARK 465 LEU A 301 REMARK 465 PRO A 302 REMARK 465 ALA A 303 REMARK 465 GLY A 304 REMARK 465 PRO A 305 REMARK 465 ASN A 306 REMARK 465 PRO A 307 REMARK 465 GLU A 308 REMARK 465 VAL A 309 REMARK 465 GLY A 310 REMARK 465 GLY A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 313 REMARK 465 PRO A 314 REMARK 465 ALA A 315 REMARK 465 HIS A 316 REMARK 465 LEU A 317 REMARK 465 MET A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 GLN A 322 REMARK 465 ALA A 323 REMARK 465 ASN A 324 REMARK 465 GLY A 325 REMARK 465 ALA A 326 REMARK 465 TYR A 490 REMARK 465 PRO A 491 REMARK 465 SER A 492 REMARK 465 THR A 493 REMARK 465 GLU A 494 REMARK 465 PHE A 495 REMARK 465 LYS A 544 REMARK 465 PRO A 545 REMARK 465 SER A 546 REMARK 465 ARG A 547 REMARK 465 VAL A 548 REMARK 465 GLY A 549 REMARK 465 ARG A 560 REMARK 465 PRO A 561 REMARK 465 GLY A 562 REMARK 465 ASP A 563 REMARK 465 VAL A 564 REMARK 465 ILE A 565 REMARK 465 SER A 566 REMARK 465 LEU A 567 REMARK 465 GLY A 568 REMARK 465 ALA A 569 REMARK 465 THR A 570 REMARK 465 SER A 571 REMARK 465 TRP A 572 REMARK 465 ARG A 573 REMARK 465 ILE A 574 REMARK 465 THR A 575 REMARK 465 GLU A 576 REMARK 465 ILE A 577 REMARK 465 THR A 578 REMARK 465 HIS A 579 REMARK 465 ASP A 580 REMARK 465 ARG A 581 REMARK 465 VAL A 582 REMARK 465 LEU A 583 REMARK 465 VAL A 584 REMARK 465 ILE A 585 REMARK 465 PRO A 586 REMARK 465 ALA A 587 REMARK 465 GLY A 725 REMARK 465 ASP A 726 REMARK 465 THR A 727 REMARK 465 PRO A 728 REMARK 465 TYR A 853 REMARK 465 VAL A 854 REMARK 465 GLY A 855 REMARK 465 ALA A 856 REMARK 465 DG B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 ARG A 593 CG CD NE CZ NH1 NH2 REMARK 470 DG B 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DG B 1 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG B 1 C2 N2 N3 C4 REMARK 470 DT B 15 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT B 15 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT B 15 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 527 NH1 ARG A 765 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 141.63 -174.12 REMARK 500 ARG A 209 118.77 -161.76 REMARK 500 THR A 361 -158.67 -90.09 REMARK 500 SER A 362 0.52 -67.64 REMARK 500 GLU A 380 155.86 68.16 REMARK 500 VAL A 536 -107.85 53.41 REMARK 500 GLU A 541 31.82 -148.85 REMARK 500 ASP A 600 139.80 -174.50 REMARK 500 SER A 601 -127.72 59.20 REMARK 500 PHE A 851 134.31 -39.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 906 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 901 O2G REMARK 620 2 ANP A 901 O1B 74.3 REMARK 620 3 HOH A1001 O 56.8 52.8 REMARK 620 4 HOH A1003 O 76.6 105.7 53.9 REMARK 620 5 HOH A1004 O 115.3 69.6 58.6 64.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ANP A 901 and GOL A REMARK 800 905 DBREF1 5V9X A 1 856 UNP A0A0D6HFY2_MYCSM DBREF2 5V9X A A0A0D6HFY2 1 856 DBREF 5V9X B 1 16 PDB 5V9X 5V9X 1 16 SEQADV 5V9X MET A -20 UNP A0A0D6HFY INITIATING METHIONINE SEQADV 5V9X GLY A -19 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -18 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -17 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -16 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -15 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -14 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -13 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -12 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -11 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -10 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -9 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X SER A -8 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X SER A -7 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X GLY A -6 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A -5 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X ILE A -4 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X GLU A -3 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X GLY A -2 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X ARG A -1 UNP A0A0D6HFY EXPRESSION TAG SEQADV 5V9X HIS A 0 UNP A0A0D6HFY EXPRESSION TAG SEQRES 1 A 877 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 877 SER GLY HIS ILE GLU GLY ARG HIS MET THR THR ASN GLY SEQRES 3 A 877 ALA ASP PRO LEU GLY ARG PHE SER ALA LEU THR ARG GLU SEQRES 4 A 877 TRP PHE THR THR ALA PHE ALA ALA PRO THR PRO ALA GLN SEQRES 5 A 877 ALA ASP ALA TRP SER ALA ILE SER GLU GLY ASN ASN THR SEQRES 6 A 877 LEU VAL ILE ALA PRO THR GLY SER GLY LYS THR LEU ALA SEQRES 7 A 877 ALA PHE LEU TRP ALA ILE ASP ARG LEU ALA ASP PRO ALA SEQRES 8 A 877 ARG GLU PRO SER GLN GLY THR GLN VAL LEU TYR VAL SER SEQRES 9 A 877 PRO LEU LYS ALA LEU ALA VAL ASP VAL GLU ARG ASN LEU SEQRES 10 A 877 ARG THR PRO LEU THR GLY ILE THR ARG VAL ALA GLU ARG SEQRES 11 A 877 HIS GLY LEU PRO ALA PRO SER ILE THR VAL GLY VAL ARG SEQRES 12 A 877 SER GLY ASP THR PRO PRO ASN GLN ARG ARG ALA MET ILE SEQRES 13 A 877 ALA ASN PRO PRO ASP VAL LEU ILE THR THR PRO GLU SER SEQRES 14 A 877 LEU PHE LEU MET LEU THR SER ALA ALA ARG GLU THR LEU SEQRES 15 A 877 THR SER VAL ARG THR VAL ILE VAL ASP GLU VAL HIS ALA SEQRES 16 A 877 VAL ALA ALA THR LYS ARG GLY ALA HIS LEU ALA LEU SER SEQRES 17 A 877 LEU GLU ARG LEU ASP GLN LEU LEU ASP THR PRO ALA GLN SEQRES 18 A 877 ARG ILE GLY LEU SER ALA THR VAL ARG PRO PRO GLU GLU SEQRES 19 A 877 VAL ALA ARG PHE LEU SER GLY GLN ALA PRO THR THR ILE SEQRES 20 A 877 VAL CYS PRO PRO ALA ALA LYS THR PHE ASP LEU SER VAL SEQRES 21 A 877 GLN VAL PRO VAL PRO ASP MET ALA ASN LEU ASP ASN ASN SEQRES 22 A 877 SER ILE TRP PRO ASP VAL GLU GLU ARG ILE VAL ASP LEU SEQRES 23 A 877 VAL GLU ALA HIS ASN SER SER ILE VAL PHE ALA ASN SER SEQRES 24 A 877 ARG ARG LEU ALA GLU ARG LEU THR SER ARG LEU ASN GLU SEQRES 25 A 877 ILE HIS ALA GLU ARG SER GLY ILE GLU LEU PRO ALA GLY SEQRES 26 A 877 PRO ASN PRO GLU VAL GLY GLY GLY ALA PRO ALA HIS LEU SEQRES 27 A 877 MET GLY SER GLY GLN ALA ASN GLY ALA PRO PRO LEU LEU SEQRES 28 A 877 ALA ARG ALA HIS HIS GLY SER VAL SER LYS GLU GLN ARG SEQRES 29 A 877 ALA GLN VAL GLU ASP ASP LEU LYS SER GLY ARG LEU ARG SEQRES 30 A 877 ALA VAL VAL ALA THR SER SER LEU GLU LEU GLY ILE ASP SEQRES 31 A 877 MET GLY ALA VAL ASP LEU VAL ILE GLN VAL GLU ALA PRO SEQRES 32 A 877 PRO SER VAL ALA SER GLY LEU GLN ARG VAL GLY ARG ALA SEQRES 33 A 877 GLY HIS GLN VAL GLY GLU ILE SER GLN GLY VAL LEU PHE SEQRES 34 A 877 PRO LYS HIS ARG THR ASP LEU ILE GLY CYS ALA VAL THR SEQRES 35 A 877 VAL GLN ARG MET GLN THR GLY ASP ILE GLU THR LEU ARG SEQRES 36 A 877 VAL PRO ALA ASN PRO LEU ASP VAL LEU ALA GLN HIS THR SEQRES 37 A 877 VAL ALA VAL ALA ALA LEU GLU PRO VAL ASP ALA ASP ALA SEQRES 38 A 877 TRP PHE ASP ALA VAL ARG ARG SER ALA PRO PHE ALA THR SEQRES 39 A 877 LEU PRO ARG SER ALA PHE GLU ALA THR LEU ASP LEU LEU SEQRES 40 A 877 SER GLY LYS TYR PRO SER THR GLU PHE ALA GLU LEU ARG SEQRES 41 A 877 PRO ARG LEU VAL TYR ASP ARG ASP THR GLY THR LEU THR SEQRES 42 A 877 ALA ARG PRO GLY ALA GLN ARG LEU ALA VAL THR SER GLY SEQRES 43 A 877 GLY ALA ILE PRO ASP ARG GLY MET PHE THR VAL TYR LEU SEQRES 44 A 877 ALA SER GLU THR GLU LYS PRO SER ARG VAL GLY GLU LEU SEQRES 45 A 877 ASP GLU GLU MET VAL TYR GLU SER ARG PRO GLY ASP VAL SEQRES 46 A 877 ILE SER LEU GLY ALA THR SER TRP ARG ILE THR GLU ILE SEQRES 47 A 877 THR HIS ASP ARG VAL LEU VAL ILE PRO ALA PRO GLY GLN SEQRES 48 A 877 PRO ALA ARG LEU PRO PHE TRP ARG GLY ASP SER VAL GLY SEQRES 49 A 877 ARG PRO ALA GLU LEU GLY ALA ALA VAL GLY ALA PHE THR SEQRES 50 A 877 GLY GLU LEU ALA SER LEU ASP ARG LYS ALA PHE ASP LYS SEQRES 51 A 877 ARG CYS GLN LYS MET GLY PHE ALA GLY TYR ALA THR ASP SEQRES 52 A 877 ASN LEU HIS GLN LEU LEU ARG GLU GLN ARG GLU ALA THR SEQRES 53 A 877 GLY VAL VAL PRO SER ASP THR THR PHE VAL VAL GLU ARG SEQRES 54 A 877 PHE ARG ASP GLU LEU GLY ASP TRP ARG VAL ILE LEU HIS SEQRES 55 A 877 SER PRO TYR GLY LEU ARG VAL HIS GLY PRO LEU ALA LEU SEQRES 56 A 877 ALA VAL GLY ARG ARG LEU ARG GLU ARG TYR GLY ILE ASP SEQRES 57 A 877 GLU LYS PRO THR ALA SER ASP ASP GLY ILE ILE VAL ARG SEQRES 58 A 877 LEU PRO ASP SER GLY ASP THR PRO PRO GLY ALA ASP LEU SEQRES 59 A 877 PHE VAL PHE ASP ALA ASP GLU ILE GLU PRO ILE VAL THR SEQRES 60 A 877 ALA GLU VAL GLY GLY SER ALA LEU PHE ALA SER ARG PHE SEQRES 61 A 877 ARG GLU CYS ALA ALA ARG ALA LEU LEU LEU PRO ARG ARG SEQRES 62 A 877 HIS PRO GLY LYS ARG SER PRO LEU TRP HIS GLN ARG GLN SEQRES 63 A 877 ARG ALA ALA GLN LEU LEU ASP ILE ALA ARG LYS TYR PRO SEQRES 64 A 877 ASP PHE PRO ILE VAL LEU GLU ALA VAL ARG GLU CYS LEU SEQRES 65 A 877 GLN ASP VAL TYR ASP VAL PRO ALA LEU ILE GLU LEU MET SEQRES 66 A 877 HIS LYS ILE ALA GLN ARG ARG LEU ARG ILE VAL GLU VAL SEQRES 67 A 877 GLU THR ALA THR PRO SER PRO PHE ALA ALA SER LEU LEU SEQRES 68 A 877 PHE GLY TYR VAL GLY ALA SEQRES 1 B 16 DG DA DC DC DT DG DC DT DG DC DG DG DA SEQRES 2 B 16 DT DT DG HET ANP A 901 31 HET GOL A 902 6 HET GOL A 903 6 HET GOL A 904 6 HET GOL A 905 6 HET MG A 906 1 HET PEG B 101 7 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 MG MG 2+ FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *18(H2 O) HELIX 1 AA1 ASP A 7 PHE A 12 5 6 HELIX 2 AA2 SER A 13 PHE A 24 1 12 HELIX 3 AA3 THR A 28 GLU A 40 1 13 HELIX 4 AA4 GLY A 53 ASP A 68 1 16 HELIX 5 AA5 LEU A 85 LEU A 96 1 12 HELIX 6 AA6 LEU A 96 HIS A 110 1 15 HELIX 7 AA7 PRO A 127 ASN A 137 1 11 HELIX 8 AA8 THR A 145 THR A 154 1 10 HELIX 9 AA9 SER A 155 THR A 162 5 8 HELIX 10 AB1 VAL A 172 ALA A 177 1 6 HELIX 11 AB2 THR A 178 GLN A 193 1 16 HELIX 12 AB3 PRO A 210 GLY A 220 1 11 HELIX 13 AB4 ILE A 254 ALA A 268 1 15 HELIX 14 AB5 SER A 278 GLY A 298 1 21 HELIX 15 AB6 SER A 339 SER A 352 1 14 HELIX 16 AB7 SER A 362 GLU A 365 5 4 HELIX 17 AB8 SER A 384 GLY A 393 1 10 HELIX 18 AB9 HIS A 411 GLY A 428 1 18 HELIX 19 AC1 PRO A 439 ALA A 451 1 13 HELIX 20 AC2 ALA A 458 SER A 468 1 11 HELIX 21 AC3 PRO A 475 GLY A 488 1 14 HELIX 22 AC4 GLY A 516 THR A 523 1 8 HELIX 23 AC5 ASP A 552 GLU A 558 1 7 HELIX 24 AC6 PRO A 605 ALA A 620 1 16 HELIX 25 AC7 ASP A 623 LYS A 633 1 11 HELIX 26 AC8 TYR A 639 GLY A 656 1 18 HELIX 27 AC9 GLY A 685 TYR A 704 1 20 HELIX 28 AD1 GLY A 730 PHE A 734 5 5 HELIX 29 AD2 ASP A 737 ASP A 739 5 3 HELIX 30 AD3 GLU A 740 VAL A 749 1 10 HELIX 31 AD4 SER A 752 ALA A 766 1 15 HELIX 32 AD5 PRO A 779 ARG A 795 1 17 HELIX 33 AD6 PHE A 800 ASP A 813 1 14 HELIX 34 AD7 ASP A 816 GLN A 829 1 14 HELIX 35 AD8 SER A 843 LEU A 850 1 8 SHEET 1 AA1 7 VAL A 119 ARG A 122 0 SHEET 2 AA1 7 VAL A 141 THR A 144 1 O ILE A 143 N ARG A 122 SHEET 3 AA1 7 VAL A 79 VAL A 82 1 N VAL A 79 O LEU A 142 SHEET 4 AA1 7 THR A 166 ASP A 170 1 O ILE A 168 N LEU A 80 SHEET 5 AA1 7 GLN A 200 SER A 205 1 O ILE A 202 N VAL A 169 SHEET 6 AA1 7 ASN A 43 ILE A 47 1 N VAL A 46 O GLY A 203 SHEET 7 AA1 7 THR A 224 VAL A 227 1 O THR A 225 N ASN A 43 SHEET 1 AA2 7 ALA A 331 HIS A 334 0 SHEET 2 AA2 7 ALA A 357 ALA A 360 1 O VAL A 359 N ARG A 332 SHEET 3 AA2 7 SER A 271 PHE A 275 1 N VAL A 274 O VAL A 358 SHEET 4 AA2 7 VAL A 373 VAL A 379 1 O ILE A 377 N PHE A 275 SHEET 5 AA2 7 SER A 403 PHE A 408 1 O VAL A 406 N GLN A 378 SHEET 6 AA2 7 PHE A 235 VAL A 241 1 N SER A 238 O LEU A 407 SHEET 7 AA2 7 PHE A 636 GLY A 638 1 O ALA A 637 N VAL A 239 SHEET 1 AA3 3 VAL A 456 ASP A 457 0 SHEET 2 AA3 3 THR A 510 ALA A 513 -1 O LEU A 511 N VAL A 456 SHEET 3 AA3 3 LEU A 502 ASP A 505 -1 N ASP A 505 O THR A 510 SHEET 1 AA4 5 THR A 711 SER A 713 0 SHEET 2 AA4 5 GLY A 716 LEU A 721 -1 O ILE A 718 N THR A 711 SHEET 3 AA4 5 TRP A 676 HIS A 681 -1 N LEU A 680 O ILE A 717 SHEET 4 AA4 5 THR A 663 ARG A 670 -1 N GLU A 667 O ILE A 679 SHEET 5 AA4 5 ARG A 833 GLU A 838 1 O VAL A 835 N VAL A 666 LINK O2' ANP A 901 C3 GOL A 905 1555 1555 1.39 LINK O2G ANP A 901 MG MG A 906 1555 1555 2.02 LINK O1B ANP A 901 MG MG A 906 1555 1555 2.43 LINK MG MG A 906 O HOH A1001 1555 1555 2.67 LINK MG MG A 906 O HOH A1003 1555 1555 2.13 LINK MG MG A 906 O HOH A1004 1555 1555 2.44 CISPEP 1 ARG A 209 PRO A 210 0 -0.80 SITE 1 AC1 5 VAL A 90 ARG A 94 ARG A 109 ALA A 344 SITE 2 AC1 5 ASP A 348 SITE 1 AC2 4 ASP A 125 ARG A 343 ALA A 344 GLU A 347 SITE 1 AC3 2 ALA A 23 SER A 352 SITE 1 AC4 6 ASP A 170 GLU A 171 ANP A 901 HOH A1001 SITE 2 AC4 6 HOH A1003 HOH A1004 SITE 1 AC5 3 THR A 178 ALA A 527 DT B 8 SITE 1 AC6 20 PHE A 24 ALA A 26 GLN A 31 PRO A 49 SITE 2 AC6 20 THR A 50 GLY A 53 LYS A 54 THR A 55 SITE 3 AC6 20 LEU A 56 ASN A 95 GLU A 171 GLY A 367 SITE 4 AC6 20 ASP A 369 ARG A 394 HIS A 397 VAL A 399 SITE 5 AC6 20 MG A 906 HOH A1001 HOH A1003 HOH A1004 CRYST1 149.462 88.129 83.675 90.00 109.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006691 0.000000 0.002317 0.00000 SCALE2 0.000000 0.011347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012647 0.00000