HEADER IMMUNE SYSTEM 26-MAR-17 5VAG TITLE CRYSTAL STRUCTURE OF H7-SPECIFIC ANTIBODY M826 IN COMPLEX WITH THE HA1 TITLE 2 DOMAIN OF HEMAGGLUTININ FROM H7N9 INFLUENZA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF ANTIBODY M826; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEAVY CHAIN OF ANTIBODY M826; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 1332244; SOURCE 4 STRAIN: A/SHANGHAI/02/2013(H7N9); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMAGGLUTININ, H7N9, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,T.YING,X.JI REVDAT 2 04-OCT-23 5VAG 1 REMARK REVDAT 1 20-DEC-17 5VAG 0 JRNL AUTH F.YU,H.SONG,Y.WU,S.Y.CHANG,L.WANG,W.LI,B.HONG,S.XIA,C.WANG, JRNL AUTH 2 S.KHURANA,Y.FENG,Y.WANG,Z.SUN,B.HE,D.HOU,J.MANISCHEWITZ, JRNL AUTH 3 L.R.KING,Y.SONG,J.Y.MIN,H.GOLDING,X.JI,L.LU,S.JIANG, JRNL AUTH 4 D.S.DIMITROV,T.YING JRNL TITL A POTENT GERMLINE-LIKE HUMAN MONOCLONAL ANTIBODY TARGETS A JRNL TITL 2 PH-SENSITIVE EPITOPE ON H7N9 INFLUENZA HEMAGGLUTININ. JRNL REF CELL HOST MICROBE V. 22 471 2017 JRNL REFN ESSN 1934-6069 JRNL PMID 28966056 JRNL DOI 10.1016/J.CHOM.2017.08.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 54391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.840 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7279 - 3.6339 1.00 8286 155 0.1597 0.1938 REMARK 3 2 3.6339 - 2.8847 1.00 7970 149 0.1943 0.2251 REMARK 3 3 2.8847 - 2.5201 1.00 7867 148 0.2145 0.2867 REMARK 3 4 2.5201 - 2.2897 1.00 7852 147 0.2137 0.2383 REMARK 3 5 2.2897 - 2.1256 1.00 7798 146 0.2246 0.2710 REMARK 3 6 2.1256 - 2.0003 0.97 7584 141 0.2697 0.2764 REMARK 3 7 2.0003 - 1.9002 0.78 6035 113 0.3199 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5169 REMARK 3 ANGLE : 1.074 7032 REMARK 3 CHIRALITY : 0.064 781 REMARK 3 PLANARITY : 0.006 908 REMARK 3 DIHEDRAL : 12.847 3138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LN6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 20% (V/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.05700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.66700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.02850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.66700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.08550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.66700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.66700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.02850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.66700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.66700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.08550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.05700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 452 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 19 REMARK 465 LYS A 20 REMARK 465 ILE A 21 REMARK 465 CYS A 22 REMARK 465 LEU A 23 REMARK 465 GLY A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 ALA A 27 REMARK 465 VAL A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 35 REMARK 465 THR A 36 REMARK 465 LEU A 37 REMARK 465 THR A 38 REMARK 465 GLU A 39 REMARK 465 ARG A 40 REMARK 465 GLY A 41 REMARK 465 VAL A 42 REMARK 465 GLU A 43 REMARK 465 VAL A 44 REMARK 465 VAL A 45 REMARK 465 ASN A 46 REMARK 465 ALA A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 THR A 54 REMARK 465 ASN A 55 REMARK 465 ILE A 56 REMARK 465 PRO A 57 REMARK 465 ARG A 58 REMARK 465 ILE A 59 REMARK 465 CYS A 60 REMARK 465 SER A 61 REMARK 465 LYS A 62 REMARK 465 GLY A 63 REMARK 465 LYS A 64 REMARK 465 MET A 274 REMARK 465 GLY A 275 REMARK 465 ILE A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 GLY A 279 REMARK 465 VAL A 280 REMARK 465 GLN A 281 REMARK 465 VAL A 282 REMARK 465 ASP A 283 REMARK 465 ALA A 284 REMARK 465 ASN A 285 REMARK 465 CYS A 286 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 ASP A 289 REMARK 465 CYS A 290 REMARK 465 TYR A 291 REMARK 465 HIS A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 GLY A 295 REMARK 465 THR A 296 REMARK 465 ILE A 297 REMARK 465 ILE A 298 REMARK 465 SER A 299 REMARK 465 ASN A 300 REMARK 465 LEU A 301 REMARK 465 PRO A 302 REMARK 465 PHE A 303 REMARK 465 GLN A 304 REMARK 465 ASN A 305 REMARK 465 ILE A 306 REMARK 465 ASP A 307 REMARK 465 SER A 308 REMARK 465 ARG A 309 REMARK 465 ALA A 310 REMARK 465 VAL A 311 REMARK 465 GLY A 312 REMARK 465 LYS A 313 REMARK 465 CYS A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 TYR A 317 REMARK 465 VAL A 318 REMARK 465 LYS A 319 REMARK 465 GLN A 320 REMARK 465 ARG A 321 REMARK 465 SER A 322 REMARK 465 LEU A 323 REMARK 465 LEU A 324 REMARK 465 LEU A 325 REMARK 465 ALA A 326 REMARK 465 THR A 327 REMARK 465 GLY A 328 REMARK 465 MET A 329 REMARK 465 LYS A 330 REMARK 465 ASN A 331 REMARK 465 VAL A 332 REMARK 465 PRO A 333 REMARK 465 GLU A 334 REMARK 465 ILE A 335 REMARK 465 PRO A 336 REMARK 465 LYS A 337 REMARK 465 GLY A 338 REMARK 465 ARG A 339 REMARK 465 GLY A 340 REMARK 465 CYS B 214 REMARK 465 GLN C 1 REMARK 465 SER C 223 REMARK 465 CYS C 224 REMARK 465 ASP C 225 REMARK 465 LYS C 226 REMARK 465 THR C 227 REMARK 465 SER C 228 REMARK 465 GLY C 229 REMARK 465 GLN C 230 REMARK 465 ALA C 231 REMARK 465 GLY C 232 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 465 HIS C 236 REMARK 465 HIS C 237 REMARK 465 HIS C 238 REMARK 465 GLY C 239 REMARK 465 ASP C 240 REMARK 465 TYR C 241 REMARK 465 LYS C 242 REMARK 465 ASP C 243 REMARK 465 ASP C 244 REMARK 465 ASP C 245 REMARK 465 ASP C 246 REMARK 465 LYS C 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 264 O HOH A 501 2.17 REMARK 500 O HOH A 555 O HOH A 593 2.17 REMARK 500 O HOH C 548 O HOH C 552 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 CA - C - O ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 148 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG B 211 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 GLY B 212 N - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 167 -0.25 67.79 REMARK 500 VAL A 232 87.85 -156.57 REMARK 500 ASN A 249 -1.83 78.01 REMARK 500 SER B 30 -128.92 53.57 REMARK 500 ALA B 51 -37.18 73.28 REMARK 500 ALA B 84 -172.64 -176.77 REMARK 500 ASP B 151 48.46 39.82 REMARK 500 ARG B 211 -6.13 -55.88 REMARK 500 THR C 28 66.96 73.83 REMARK 500 TRP C 103 -1.66 80.17 REMARK 500 ALA C 105 53.90 -158.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 303 DBREF 5VAG A 19 340 UNP R4NN21 R4NN21_9INFA 19 340 DBREF 5VAG B 0 214 PDB 5VAG 5VAG 0 214 DBREF 5VAG C 1 247 PDB 5VAG 5VAG 1 247 SEQRES 1 A 322 ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY SEQRES 2 A 322 THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL SEQRES 3 A 322 VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO SEQRES 4 A 322 ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY SEQRES 5 A 322 GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN SEQRES 6 A 322 CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE SEQRES 7 A 322 GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS SEQRES 8 A 322 PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SEQRES 9 A 322 SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SEQRES 10 A 322 SER GLY ILE ARG THR ASN GLY ALA THR SER ALA CYS ARG SEQRES 11 A 322 ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU SEQRES 12 A 322 LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR SEQRES 13 A 322 LYS SER TYR LYS ASN THR ARG LYS SER PRO ALA LEU ILE SEQRES 14 A 322 VAL TRP GLY ILE HIS HIS SER VAL SER THR ALA GLU GLN SEQRES 15 A 322 THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL SEQRES 16 A 322 GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO SEQRES 17 A 322 GLY ALA ARG PRO GLN VAL ASN GLY LEU SER GLY ARG ILE SEQRES 18 A 322 ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL SEQRES 19 A 322 THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG SEQRES 20 A 322 ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER SEQRES 21 A 322 GLY VAL GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS TYR SEQRES 22 A 322 HIS SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN SEQRES 23 A 322 ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR SEQRES 24 A 322 VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS SEQRES 25 A 322 ASN VAL PRO GLU ILE PRO LYS GLY ARG GLY SEQRES 1 B 215 GLY ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER SEQRES 2 B 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 B 215 SER GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN GLN SEQRES 4 B 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SEQRES 5 B 215 SER SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 B 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 B 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 B 215 SER TYR SER THR PRO ARG THR PHE GLY GLN GLY THR LYS SEQRES 9 B 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 247 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 C 247 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 C 247 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 C 247 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 C 247 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 C 247 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 C 247 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 C 247 ALA VAL TYR TYR CYS ALA ARG ASP PRO SER PHE TRP ALA SEQRES 9 C 247 ALA GLU TYR PHE GLN HIS TRP GLY GLN GLY THR LEU VAL SEQRES 10 C 247 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 C 247 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 C 247 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 C 247 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 C 247 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 C 247 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 C 247 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 C 247 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 C 247 LYS SER CYS ASP LYS THR SER GLY GLN ALA GLY HIS HIS SEQRES 19 C 247 HIS HIS HIS HIS GLY ASP TYR LYS ASP ASP ASP ASP LYS HET EDO A 401 10 HET EDO A 402 10 HET EDO B 301 10 HET EDO B 302 10 HET EDO B 303 10 HET EDO B 304 10 HET EDO B 305 10 HET EDO C 301 10 HET EDO C 302 10 HET EDO C 303 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 10(C2 H6 O2) FORMUL 14 HOH *410(H2 O) HELIX 1 AA1 LEU A 75 GLY A 80 1 6 HELIX 2 AA2 PRO A 81 LEU A 88 5 8 HELIX 3 AA3 ASN A 112 GLU A 122 1 11 HELIX 4 AA4 SER A 196 GLY A 205 1 10 HELIX 5 AA5 GLN B 79 PHE B 83 5 5 HELIX 6 AA6 SER B 121 SER B 127 1 7 HELIX 7 AA7 LYS B 183 LYS B 188 1 6 HELIX 8 AA8 THR C 28 TYR C 32 5 5 HELIX 9 AA9 GLN C 62 GLN C 65 5 4 HELIX 10 AB1 ARG C 87 THR C 91 5 5 HELIX 11 AB2 SER C 135 LYS C 137 5 3 HELIX 12 AB3 SER C 164 ALA C 166 5 3 HELIX 13 AB4 SER C 195 THR C 199 5 5 HELIX 14 AB5 LYS C 209 ASN C 212 5 4 SHEET 1 AA1 2 THR A 66 ASP A 68 0 SHEET 2 AA1 2 LEU A 94 ILE A 96 1 O ILE A 96 N VAL A 67 SHEET 1 AA2 2 ILE A 126 ALA A 130 0 SHEET 2 AA2 2 ARG A 265 LEU A 269 -1 O ALA A 266 N GLU A 129 SHEET 1 AA3 2 ILE A 138 ARG A 139 0 SHEET 2 AA3 2 LEU A 162 SER A 163 -1 O LEU A 162 N ARG A 139 SHEET 1 AA4 2 THR A 144 ARG A 148 0 SHEET 2 AA4 2 SER A 152 SER A 153 -1 O SER A 153 N THR A 144 SHEET 1 AA5 4 MET A 158 TRP A 160 0 SHEET 2 AA5 4 PHE A 260 PRO A 263 -1 O ALA A 262 N LYS A 159 SHEET 3 AA5 4 ALA A 185 HIS A 193 -1 N GLY A 190 O ILE A 261 SHEET 4 AA5 4 ARG A 238 LEU A 246 -1 O ARG A 238 N HIS A 193 SHEET 1 AA6 4 MET A 173 LYS A 178 0 SHEET 2 AA6 4 THR A 251 PHE A 256 -1 O PHE A 254 N LYS A 175 SHEET 3 AA6 4 VAL A 211 SER A 215 -1 N THR A 212 O SER A 255 SHEET 4 AA6 4 TYR A 218 PHE A 222 -1 O PHE A 222 N VAL A 211 SHEET 1 AA7 4 LEU B 4 SER B 7 0 SHEET 2 AA7 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 AA7 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 GLY B 66 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 SER B 10 ALA B 13 0 SHEET 2 AA8 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA8 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N ASN B 34 O GLN B 89 SHEET 5 AA8 6 LYS B 45 TYR B 49 -1 O LYS B 45 N GLN B 37 SHEET 6 AA8 6 SER B 53 LEU B 54 -1 O SER B 53 N TYR B 49 SHEET 1 AA9 4 SER B 10 ALA B 13 0 SHEET 2 AA9 4 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA9 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O TYR B 173 N PHE B 139 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O ALA B 193 N LYS B 149 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O LYS B 207 N CYS B 194 SHEET 1 AB3 4 LEU C 4 GLN C 6 0 SHEET 2 AB3 4 VAL C 18 ALA C 24 -1 O LYS C 23 N VAL C 5 SHEET 3 AB3 4 THR C 78 LEU C 83 -1 O MET C 81 N VAL C 20 SHEET 4 AB3 4 VAL C 68 ASP C 73 -1 N THR C 71 O TYR C 80 SHEET 1 AB4 6 GLU C 10 LYS C 12 0 SHEET 2 AB4 6 THR C 115 VAL C 119 1 O THR C 118 N LYS C 12 SHEET 3 AB4 6 ALA C 92 ASP C 99 -1 N ALA C 92 O VAL C 117 SHEET 4 AB4 6 ALA C 33 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AB4 6 LEU C 45 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AB4 6 ALA C 58 TYR C 60 -1 O ASN C 59 N GLY C 50 SHEET 1 AB5 4 GLU C 10 LYS C 12 0 SHEET 2 AB5 4 THR C 115 VAL C 119 1 O THR C 118 N LYS C 12 SHEET 3 AB5 4 ALA C 92 ASP C 99 -1 N ALA C 92 O VAL C 117 SHEET 4 AB5 4 HIS C 110 TRP C 111 -1 O HIS C 110 N ARG C 98 SHEET 1 AB6 4 SER C 128 LEU C 132 0 SHEET 2 AB6 4 THR C 143 TYR C 153 -1 O LEU C 149 N PHE C 130 SHEET 3 AB6 4 TYR C 184 PRO C 193 -1 O TYR C 184 N TYR C 153 SHEET 4 AB6 4 VAL C 171 THR C 173 -1 N HIS C 172 O VAL C 189 SHEET 1 AB7 4 THR C 139 SER C 140 0 SHEET 2 AB7 4 THR C 143 TYR C 153 -1 O THR C 143 N SER C 140 SHEET 3 AB7 4 TYR C 184 PRO C 193 -1 O TYR C 184 N TYR C 153 SHEET 4 AB7 4 VAL C 177 LEU C 178 -1 N VAL C 177 O SER C 185 SHEET 1 AB8 3 THR C 159 TRP C 162 0 SHEET 2 AB8 3 ILE C 203 HIS C 208 -1 O ASN C 205 N SER C 161 SHEET 3 AB8 3 THR C 213 LYS C 218 -1 O VAL C 215 N VAL C 206 SSBOND 1 CYS A 72 CYS A 84 1555 1555 2.07 SSBOND 2 CYS A 105 CYS A 147 1555 1555 2.06 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.12 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.03 SSBOND 5 CYS C 22 CYS C 96 1555 1555 2.05 SSBOND 6 CYS C 148 CYS C 204 1555 1555 2.03 CISPEP 1 VAL A 232 ASN A 233 0 -4.06 CISPEP 2 SER B 7 PRO B 8 0 -7.28 CISPEP 3 THR B 94 PRO B 95 0 -2.31 CISPEP 4 TYR B 140 PRO B 141 0 0.96 CISPEP 5 ARG B 211 GLY B 212 0 7.10 CISPEP 6 PHE C 154 PRO C 155 0 -4.97 CISPEP 7 GLU C 156 PRO C 157 0 1.40 SITE 1 AC1 5 GLY A 142 ALA A 143 LEU A 162 LEU A 203 SITE 2 AC1 5 HOH A 569 SITE 1 AC2 6 ASP A 85 GLN A 86 PHE A 87 LEU A 88 SITE 2 AC2 6 ALA A 156 HOH A 518 SITE 1 AC3 3 GLN A 219 SER B 53 LEU B 54 SITE 1 AC4 6 GLN B 37 LYS B 45 PHE B 62 GLU B 81 SITE 2 AC4 6 ASP B 82 HOH B 482 SITE 1 AC5 6 PRO B 8 LEU B 11 VAL B 19 THR B 20 SITE 2 AC5 6 HOH B 437 HOH B 486 SITE 1 AC6 4 GLN B 38 GLY B 41 LYS B 42 HOH B 508 SITE 1 AC7 1 GLN B 155 SITE 1 AC8 9 THR B 178 HOH B 421 LEU C 149 VAL C 177 SITE 2 AC8 9 SER C 185 LEU C 186 SER C 187 HOH C 423 SITE 3 AC8 9 HOH C 469 SITE 1 AC9 6 ARG A 98 LEU C 197 THR C 201 LYS C 218 SITE 2 AC9 6 GLU C 220 HOH C 403 SITE 1 AD1 6 GLU C 156 PRO C 157 VAL C 158 ALA C 176 SITE 2 AD1 6 LEU C 186 HOH C 405 CRYST1 101.334 101.334 136.114 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007347 0.00000